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Items: 1 to 50 of 153

1.

Next-generation transcriptome assembly and analysis: Impact of ploidy.

Voshall A, Moriyama EN.

Methods. 2019 Jun 6. pii: S1046-2023(18)30380-3. doi: 10.1016/j.ymeth.2019.06.001. [Epub ahead of print]

PMID:
31176772
2.

[Three Cases of Intrathecal Chemotherapy with Ventricular Catheter for the Treatment of Leptomeningeal Metastasis from Breast Cancer].

Miyoshi K, Takahashi H, Uno M, Akai M, Moriyama E, Nakagawa T, Nomura T.

Gan To Kagaku Ryoho. 2018 Dec;45(12):1767-1769. Japanese.

PMID:
30587738
3.

Headache due to Spontaneous Spinal Cerebrospinal Fluid Leaks.

Fujiwara M, Moriyama E, Araki T.

Intern Med. 2019 Feb 1;58(3):461. doi: 10.2169/internalmedicine.1136-18. Epub 2018 Sep 12. No abstract available.

4.

Meta-Analysis of Fecal Microbiota and Metabolites in Experimental Colitic Mice during the Inflammatory and Healing Phases.

Osaka T, Moriyama E, Arai S, Date Y, Yagi J, Kikuchi J, Tsuneda S.

Nutrients. 2017 Dec 6;9(12). pii: E1329. doi: 10.3390/nu9121329.

5.

MOCASSIN-prot: a multi-objective clustering approach for protein similarity networks.

Keel BN, Deng B, Moriyama EN.

Bioinformatics. 2018 Apr 15;34(8):1270-1277. doi: 10.1093/bioinformatics/btx755.

PMID:
29186344
6.

miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation.

Voshall A, Kim EJ, Ma X, Yamasaki T, Moriyama EN, Cerutti H.

Sci Rep. 2017 Jul 14;7(1):5462. doi: 10.1038/s41598-017-05561-0.

7.

Metabolic targeting of HIF-dependent glycolysis reduces lactate, increases oxygen consumption and enhances response to high-dose single-fraction radiotherapy in hypoxic solid tumors.

Leung E, Cairns RA, Chaudary N, Vellanki RN, Kalliomaki T, Moriyama EH, Mujcic H, Wilson BC, Wouters BG, Hill R, Milosevic M.

BMC Cancer. 2017 Jun 15;17(1):418. doi: 10.1186/s12885-017-3402-6.

8.

Patterns of Gene Expression in Western Corn Rootworm (Diabrotica virgifera virgifera) Neonates, Challenged with Cry34Ab1, Cry35Ab1 and Cry34/35Ab1, Based on Next-Generation Sequencing.

Wang H, Eyun SI, Arora K, Tan SY, Gandra P, Moriyama E, Khajuria C, Jurzenski J, Li H, Donahue M, Narva K, Siegfried B.

Toxins (Basel). 2017 Mar 30;9(4). pii: E124. doi: 10.3390/toxins9040124.

9.

Advantages of an Improved Rhesus Macaque Genome for Evolutionary Analyses.

Gradnigo JS, Majumdar A, Norgren RB Jr, Moriyama EN.

PLoS One. 2016 Dec 2;11(12):e0167376. doi: 10.1371/journal.pone.0167376. eCollection 2016.

10.

Whole genomic sequence analysis of Bacillus infantis: defining the genetic blueprint of strain NRRL B-14911, an emerging cardiopathogenic microbe.

Massilamany C, Mohammed A, Loy JD, Purvis T, Krishnan B, Basavalingappa RH, Kelley CM, Guda C, Barletta RG, Moriyama EN, Smith TP, Reddy J.

BMC Genomics. 2016 Aug 22;17 Suppl 7:511. doi: 10.1186/s12864-016-2900-2.

11.

Genome Sequence of Streptomyces aureofaciens ATCC Strain 10762.

Gradnigo JS, Somerville GA, Huether MJ, Kemmy RJ, Johnson CM, Oliver MG, Moriyama EN.

Genome Announc. 2016 Jun 23;4(3). pii: e00615-16. doi: 10.1128/genomeA.00615-16.

12.

Molecular Evolution and Functional Divergence of Trace Amine-Associated Receptors.

Eyun SI, Moriyama H, Hoffmann FG, Moriyama EN.

PLoS One. 2016 Mar 10;11(3):e0151023. doi: 10.1371/journal.pone.0151023. eCollection 2016.

13.

Carbon dioxide receptor genes and their expression profile in Diabrotica virgifera virgifera.

Rodrigues TB, Moriyama EN, Wang H, Khajuria C, Siegfried BD.

BMC Res Notes. 2016 Jan 8;9:18. doi: 10.1186/s13104-015-1794-4.

14.

Transcriptional analysis of susceptible and resistant European corn borer strains and their response to Cry1F protoxin.

Nanoth Vellichirammal N, Wang H, Eyun SI, Moriyama EN, Coates BS, Miller NJ, Siegfried BD.

BMC Genomics. 2015 Jul 29;16:558. doi: 10.1186/s12864-015-1751-6.

15.

Complete Genome Sequence of an Evolved Thermotoga maritima Isolate.

Singh R, Gradnigo J, White D, Lipzen A, Martin J, Schackwitz W, Moriyama E, Blum P.

Genome Announc. 2015 May 28;3(3). pii: e00557-15. doi: 10.1128/genomeA.00557-15.

16.

Complete Genome Sequence of Sulfolobus solfataricus Strain 98/2 and Evolved Derivatives.

McCarthy S, Gradnigo J, Johnson T, Payne S, Lipzen A, Martin J, Schackwitz W, Moriyama E, Blum P.

Genome Announc. 2015 May 28;3(3). pii: e00549-15. doi: 10.1128/genomeA.00549-15.

17.

Strengthening of the intestinal epithelial tight junction by Bifidobacterium bifidum.

Hsieh CY, Osaka T, Moriyama E, Date Y, Kikuchi J, Tsuneda S.

Physiol Rep. 2015 Mar;3(3). pii: e12327. doi: 10.14814/phy2.12327.

18.

Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii.

Voshall A, Kim EJ, Ma X, Moriyama EN, Cerutti H.

Genetics. 2015 May;200(1):105-21. doi: 10.1534/genetics.115.174797. Epub 2015 Mar 13.

19.

De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences.

Maudhoo MD, Ren D, Gradnigo JS, Gibbs RM, Lubker AC, Moriyama EN, French JA, Norgren RB Jr.

Gigascience. 2014 Sep 19;3:14. doi: 10.1186/2047-217X-3-14. eCollection 2014.

20.

Gut microbial metabolism drives transformation of MSH2-deficient colon epithelial cells.

Belcheva A, Irrazabal T, Robertson SJ, Streutker C, Maughan H, Rubino S, Moriyama EH, Copeland JK, Surendra A, Kumar S, Green B, Geddes K, Pezo RC, Navarre WW, Milosevic M, Wilson BC, Girardin SE, Wolever TMS, Edelmann W, Guttman DS, Philpott DJ, Martin A.

Cell. 2014 Jul 17;158(2):288-299. doi: 10.1016/j.cell.2014.04.051. Erratum in: Cell. 2014 Oct 9;159(2):456.

21.

Molecular evolution of glycoside hydrolase genes in the Western corn rootworm (Diabrotica virgifera virgifera).

Eyun SI, Wang H, Pauchet Y, Ffrench-Constant RH, Benson AK, Valencia-Jiménez A, Moriyama EN, Siegfried BD.

PLoS One. 2014 Apr 9;9(4):e94052. doi: 10.1371/journal.pone.0094052. eCollection 2014. Erratum in: PLoS One. 2014;9(7):e102818.

22.

Optical glucose analogs of aminolevulinic acid for fluorescence-guided tumor resection and photodynamic therapy.

Moriyama EH, Cao W, Liu TW, Wang HL, Kim PD, Chen J, Zheng G, Wilson BC.

Mol Imaging Biol. 2014 Aug;16(4):495-503. doi: 10.1007/s11307-013-0687-y.

PMID:
24323192
23.

Comparative studies of differential gene calling using RNA-Seq data.

Zheng X, Moriyama EN.

BMC Bioinformatics. 2013;14 Suppl 13:S7. doi: 10.1186/1471-2105-14-S13-S7. Epub 2013 Oct 1.

24.

Complementarity to an miRNA seed region is sufficient to induce moderate repression of a target transcript in the unicellular green alga Chlamydomonas reinhardtii.

Yamasaki T, Voshall A, Kim EJ, Moriyama E, Cerutti H, Ohama T.

Plant J. 2013 Dec;76(6):1045-56. doi: 10.1111/tpj.12354.

25.

Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus.

Shah N, Gaupp R, Moriyama H, Eskridge KM, Moriyama EN, Somerville GA.

BMC Genomics. 2013 Jul 31;14:524. doi: 10.1186/1471-2164-14-524.

26.

Small interfering RNA-mediated translation repression alters ribosome sensitivity to inhibition by cycloheximide in Chlamydomonas reinhardtii.

Ma X, Kim EJ, Kook I, Ma F, Voshall A, Moriyama E, Cerutti H.

Plant Cell. 2013 Mar;25(3):985-98. doi: 10.1105/tpc.113.109256. Epub 2013 Mar 19.

27.

Towards defining nutrient conditions encountered by the rice blast fungus during host infection.

Wilson RA, Fernandez J, Quispe CF, Gradnigo J, Seng A, Moriyama E, Wright JD.

PLoS One. 2012;7(10):e47392. doi: 10.1371/journal.pone.0047392. Epub 2012 Oct 10.

28.

Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factor-mediated upregulation of caveolin-1.

Wang Y, Roche O, Xu C, Moriyama EH, Heir P, Chung J, Roos FC, Chen Y, Finak G, Milosevic M, Wilson BC, Teh BT, Park M, Irwin MS, Ohh M.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4892-7. doi: 10.1073/pnas.1112129109. Epub 2012 Mar 12.

29.

Evolution of a large, conserved, and syntenic gene family in insects.

Shah N, Dorer DR, Moriyama EN, Christensen AC.

G3 (Bethesda). 2012 Feb;2(2):313-9. doi: 10.1534/g3.111.001412. Epub 2012 Feb 1.

30.

Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.

Klopffleisch K, Phan N, Augustin K, Bayne RS, Booker KS, Botella JR, Carpita NC, Carr T, Chen JG, Cooke TR, Frick-Cheng A, Friedman EJ, Fulk B, Hahn MG, Jiang K, Jorda L, Kruppe L, Liu C, Lorek J, McCann MC, Molina A, Moriyama EN, Mukhtar MS, Mudgil Y, Pattathil S, Schwarz J, Seta S, Tan M, Temp U, Trusov Y, Urano D, Welter B, Yang J, Panstruga R, Uhrig JF, Jones AM.

Mol Syst Biol. 2011 Sep 27;7:532. doi: 10.1038/msb.2011.66.

31.

SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.

Anderson CL, Strope CL, Moriyama EN.

BMC Bioinformatics. 2011 May 21;12:184. doi: 10.1186/1471-2105-12-184.

32.

Molecular evolution of urea amidolyase and urea carboxylase in fungi.

Strope PK, Nickerson KW, Harris SD, Moriyama EN.

BMC Evol Biol. 2011 Mar 29;11:80. doi: 10.1186/1471-2148-11-80.

33.

Uroporphyrinogen decarboxylase is a radiosensitizing target for head and neck cancer.

Ito E, Yue S, Moriyama EH, Hui AB, Kim I, Shi W, Alajez NM, Bhogal N, Li G, Datti A, Schimmer AD, Wilson BC, Liu PP, Durocher D, Neel BG, O'Sullivan B, Cummings B, Bristow R, Wrana J, Liu FF.

Sci Transl Med. 2011 Jan 26;3(67):67ra7. doi: 10.1126/scitranslmed.3001922.

34.

Evolution of the Kdo2-lipid A biosynthesis in bacteria.

Opiyo SO, Pardy RL, Moriyama H, Moriyama EN.

BMC Evol Biol. 2010 Nov 24;10:362. doi: 10.1186/1471-2148-10-362.

35.

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors.

Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J, Zhang M, Oh PL, Nehrenberg D, Hua K, Kachman SD, Moriyama EN, Walter J, Peterson DA, Pomp D.

Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18933-8. doi: 10.1073/pnas.1007028107. Epub 2010 Oct 11.

36.

Oncolytic targeting of renal cell carcinoma via encephalomyocarditis virus.

Roos FC, Roberts AM, Hwang II, Moriyama EH, Evans AJ, Sybingco S, Watson IR, Carneiro LA, Gedye C, Girardin SE, Ailles LE, Jewett MA, Milosevic M, Wilson BC, Bell JC, Der SD, Ohh M.

EMBO Mol Med. 2010 Jul;2(7):275-88. doi: 10.1002/emmm.201000081.

37.

Continuous docetaxel chemotherapy improves therapeutic efficacy in murine models of ovarian cancer.

De Souza R, Zahedi P, Moriyama EH, Allen CJ, Wilson BC, Piquette-Miller M.

Mol Cancer Ther. 2010 Jun;9(6):1820-30. doi: 10.1158/1535-7163.MCT-10-0249. Epub 2010 Jun 8.

38.

Molecular evolutionary analysis of seminal receptacle sperm storage organ genes of Drosophila melanogaster.

Prokupek AM, Eyun SI, Ko L, Moriyama EN, Harshman LG.

J Evol Biol. 2010 Jul;23(7):1386-98. doi: 10.1111/j.1420-9101.2010.01998.x. Epub 2010 May 24.

39.

Mining Cytochrome b561 proteins from plant genomes.

Opiyo SO, Moriyama EN.

Int J Bioinform Res Appl. 2010;6(2):209-21.

40.

Drug and light dose responses to focal photodynamic therapy of single blood vessels in vivo.

Khurana M, Moriyama EH, Mariampillai A, Samkoe K, Cramb D, Wilson BC.

J Biomed Opt. 2009 Nov-Dec;14(6):064006. doi: 10.1117/1.3262521.

PMID:
20059244
41.

Oxygen-independent degradation of HIF-alpha via bioengineered VHL tumour suppressor complex.

Sufan RI, Moriyama EH, Mariampillai A, Roche O, Evans AJ, Alajez NM, Vitkin IA, Yang VX, Liu FF, Wilson BC, Ohh M.

EMBO Mol Med. 2009 Apr;1(1):66-78. doi: 10.1002/emmm.200900004.

42.

Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution.

Oh PL, Benson AK, Peterson DA, Patil PB, Moriyama EN, Roos S, Walter J.

ISME J. 2010 Mar;4(3):377-87. doi: 10.1038/ismej.2009.123. Epub 2009 Nov 19.

PMID:
19924154
43.

Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0.

Strope CL, Abel K, Scott SD, Moriyama EN.

Mol Biol Evol. 2009 Nov;26(11):2581-93. doi: 10.1093/molbev/msp174. Epub 2009 Aug 3.

44.

Spinal cerebrospinal fluid leakage after motor vehicle accident.

Moriyama E, Terada H, Ishikawa S.

Neurol Med Chir (Tokyo). 2009 Jul;49(7):306-9.

45.

7TMRmine: a Web server for hierarchical mining of 7TMR proteins.

Lu G, Wang Z, Jones AM, Moriyama EN.

BMC Genomics. 2009 Jun 19;10:275. doi: 10.1186/1471-2164-10-275.

46.

Mining the Arabidopsis and rice genomes for cyclophilin protein families.

Opiyo SO, Moriyama EN.

Int J Bioinform Res Appl. 2009;5(3):295-309.

47.

Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota.

Martínez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J.

Appl Environ Microbiol. 2009 Jun;75(12):4175-84. doi: 10.1128/AEM.00380-09. Epub 2009 May 1.

48.

Tracking cardiac engraftment and distribution of implanted bone marrow cells: Comparing intra-aortic, intravenous, and intramyocardial delivery.

Li SH, Lai TY, Sun Z, Han M, Moriyama E, Wilson B, Fazel S, Weisel RD, Yau T, Wu JC, Li RK.

J Thorac Cardiovasc Surg. 2009 May;137(5):1225-33.e1. doi: 10.1016/j.jtcvs.2008.11.001. Epub 2009 Mar 17.

49.

In vivo effects of low level laser therapy on inducible nitric oxide synthase.

Moriyama Y, Nguyen J, Akens M, Moriyama EH, Lilge L.

Lasers Surg Med. 2009 Mar;41(3):227-31. doi: 10.1002/lsm.20745.

PMID:
19291752
50.

Proof-of-principle demonstration of a Mueller matrix decomposition method for polarized light tissue characterization in vivo.

Wood MF, Ghosh N, Moriyama EH, Wilson BC, Vitkin IA.

J Biomed Opt. 2009 Jan-Feb;14(1):014029. doi: 10.1117/1.3065545.

PMID:
19256717

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