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Crystal structure of fac-bis-[bis-(pyridin-2-yl)methan-amine]-iron(II) 1,1,3,3-tetra-cyano-2-(di-cyano-methyl-idene)propane-1,3-diide, [Fe(dipa)2](tcpd).

Setifi Z, Corfield PWR, Setifi F, Morgenstern B, Hegetschweiler K, Kaddouri Y.

Acta Crystallogr E Crystallogr Commun. 2018 Aug 14;74(Pt 9):1227-1230. doi: 10.1107/S2056989018011143. eCollection 2018 Sep 1.


Neoadjuvant Therapy of Cervical Carcinoma with the Angiogenesis Inhibitor Bevacizumab: a Single-Centre Analysis.

Junker P, Puppe J, Thangarajah F, Domröse C, Cepic A, Morgenstern B, Ratiu D, Hellmich M, Mallmann P, Wirtz M.

Geburtshilfe Frauenheilkd. 2018 Aug;78(8):768-774. doi: 10.1055/a-0641-5588. Epub 2018 Aug 20.


Construction of human artificial ovary from cryopreserved ovarian tissue: Appearance of apoptosis and necrosis after enzymatic isolation of follicles.

Schmidt VM, Isachenko E, Rappl G, Rahimi G, Hanstein B, Morgenstern B, Mallmann P, Isachenko V.

Cryobiology. 2018 Aug 24. pii: S0011-2240(18)30179-2. doi: 10.1016/j.cryobiol.2018.08.011. [Epub ahead of print]


Accurate multiple alignment of distantly related genome sequences using Filtered Spaced Word Matches as anchor points.

Leimeister CA, Dencker T, Morgenstern B.

Bioinformatics. 2018 Jul 10. doi: 10.1093/bioinformatics/bty592. [Epub ahead of print]


Comparison of the enzymatic efficiency of Liberase TM and tumor dissociation enzyme: effect on the viability of cells digested from fresh and cryopreserved human ovarian cortex.

Schmidt VM, Isachenko V, Rappl G, Rahimi G, Hanstein B, Morgenstern B, Mallmann P, Isachenko E.

Reprod Biol Endocrinol. 2018 Jun 2;16(1):57. doi: 10.1186/s12958-018-0374-6.


Phylogeny reconstruction based on the length distribution of k-mismatch common substrings.

Morgenstern B, Schöbel S, Leimeister CA.

Algorithms Mol Biol. 2017 Dec 11;12:27. doi: 10.1186/s13015-017-0118-8. eCollection 2017.


Hafnium-Based Contrast Agents for X-ray Computed Tomography.

Berger M, Bauser M, Frenzel T, Hilger CS, Jost G, Lauria S, Morgenstern B, Neis C, Pietsch H, Sülzle D, Hegetschweiler K.

Inorg Chem. 2017 May 15;56(10):5757-5761. doi: 10.1021/acs.inorgchem.7b00359. Epub 2017 Apr 21.


Crystal structure of meso-di-μ-chlorido-bis-[bis-(2,2'-bi-pyridine)-cadmium] bis-(1,1,3,3-tetra-cyano-2-ethoxy-propenide) 0.81-hydrate.

Setifi F, Morgenstern B, Hegetschweiler K, Setifi Z, Touzani R, Glidewell C.

Acta Crystallogr E Crystallogr Commun. 2017 Jan 1;73(Pt 1):48-52. doi: 10.1107/S205698901601971X. eCollection 2017 Jan 1.


Fast and accurate phylogeny reconstruction using filtered spaced-word matches.

Leimeister CA, Sohrabi-Jahromi S, Morgenstern B.

Bioinformatics. 2017 Apr 1;33(7):971-979. doi: 10.1093/bioinformatics/btw776.


rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison.

Hahn L, Leimeister CA, Ounit R, Lonardi S, Morgenstern B.

PLoS Comput Biol. 2016 Oct 19;12(10):e1005107. doi: 10.1371/journal.pcbi.1005107. eCollection 2016 Oct.


The Challenges of Diagnosing and Following Wilson Disease in the Presence of Proteinuria.

Khan S, Schilsky M, Silber G, Morgenstern B, Miloh T.

Pediatr Gastroenterol Hepatol Nutr. 2016 Jun;19(2):139-42. doi: 10.5223/pghn.2016.19.2.139. Epub 2016 Jun 28.


Neurocognitive, Social-Behavioral, and Adaptive Functioning in Preschool Children with Mild to Moderate Kidney Disease.

Hooper SR, Gerson AC, Johnson RJ, Mendley SR, Shinnar S, Lande MB, Matheson MB, Gipson DS, Morgenstern B, Warady BA, Furth SL.

J Dev Behav Pediatr. 2016 Apr;37(3):231-8. doi: 10.1097/DBP.0000000000000267.


Hydrogen-bonding patterns in bis[2,4,6-triazaniumylcyclohexane-1,3,5-tris(olate)-κ(3)O,O',O'']germanium(IV) tetrachloride hexahydrate.

Neis C, Morgenstern B, Hegetschweiler K.

Acta Crystallogr C Struct Chem. 2016 Jan;72(Pt 1):28-34. doi: 10.1107/S2053229615023165. Epub 2016 Jan 1.


The number of removed lymph nodes by inguinofemoral lymphadenectomy: impact on recurrence rates in patients with vulva carcinoma.

Diehl A, Volland R, Kirn V, Thangarajah F, Eichler C, Einzmann T, Wirtz M, Ratiu D, Morgenstern B, Fridrich C, Mallmann P, Puppe J.

Arch Gynecol Obstet. 2016 Jul;294(1):131-6. doi: 10.1007/s00404-015-3932-6. Epub 2015 Oct 26.


The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology.

Schmitt-Engel C, Schultheis D, Schwirz J, Ströhlein N, Troelenberg N, Majumdar U, Dao VA, Grossmann D, Richter T, Tech M, Dönitz J, Gerischer L, Theis M, Schild I, Trauner J, Koniszewski ND, Küster E, Kittelmann S, Hu Y, Lehmann S, Siemanowski J, Ulrich J, Panfilio KA, Schröder R, Morgenstern B, Stanke M, Buchhholz F, Frasch M, Roth S, Wimmer EA, Schoppmeier M, Klingler M, Bucher G.

Nat Commun. 2015 Jul 28;6:7822. doi: 10.1038/ncomms8822.


MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data.

Kaever A, Landesfeind M, Feussner K, Mosblech A, Heilmann I, Morgenstern B, Feussner I, Meinicke P.

Metabolomics. 2015;11(3):764-777. Epub 2014 Oct 10.


How much platinum passes the placental barrier? Analysis of platinum applications in 21 patients with cervical cancer during pregnancy.

Köhler C, Oppelt P, Favero G, Morgenstern B, Runnebaum I, Tsunoda A, Schmittel A, Schneider A, Mueller M, Marnitz S.

Am J Obstet Gynecol. 2015 Aug;213(2):206.e1-5. doi: 10.1016/j.ajog.2015.02.022. Epub 2015 Feb 27.


Estimating evolutionary distances between genomic sequences from spaced-word matches.

Morgenstern B, Zhu B, Horwege S, Leimeister CA.

Algorithms Mol Biol. 2015 Feb 11;10:5. doi: 10.1186/s13015-015-0032-x. eCollection 2015.


Synthesis, crystal structure and physico-chemical properties of 3,3'-[(4-hydroxyphenyl)methyl] bis-(4-hydroxy-2H-chromen-2-one).

Elenkova D, Morgenstern B, Manolov I, Milanova M.

Acta Chim Slov. 2014;61(4):718-28.


Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches.

Horwege S, Lindner S, Boden M, Hatje K, Kollmar M, Leimeister CA, Morgenstern B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W7-11. doi: 10.1093/nar/gku398. Epub 2014 May 14.


Kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison.

Leimeister CA, Morgenstern B.

Bioinformatics. 2014 Jul 15;30(14):2000-8. doi: 10.1093/bioinformatics/btu331. Epub 2014 May 13.


Fast alignment-free sequence comparison using spaced-word frequencies.

Leimeister CA, Boden M, Horwege S, Lindner S, Morgenstern B.

Bioinformatics. 2014 Jul 15;30(14):1991-9. doi: 10.1093/bioinformatics/btu177. Epub 2014 Apr 3.


Transplantation of cryopreserved human ovarian tissue: restoration of reproductive function after two cycles of radio- and chemo-therapeutic treatments.

Isachenko E, Isachenko V, Mallmann P, Orth I, Peters D, Schmidt T, Morgenstern B, Foth D, Hanstein B, Röthlisberger M, Rahimi G.

Clin Lab. 2014;60(2):245-52.


Meta-analysis of pathway enrichment: combining independent and dependent omics data sets.

Kaever A, Landesfeind M, Feussner K, Morgenstern B, Feussner I, Meinicke P.

PLoS One. 2014 Feb 28;9(2):e89297. doi: 10.1371/journal.pone.0089297. eCollection 2014.


In vitro perfusion of whole bovine ovaries by freezing medium: effect of perfusion rate and elapsed time after extraction.

Isachenko V, Isachenko E, Peters D, Mallmann P, Morgenstern B, Kellerwessel E, Otarbaev M, Baikoshkarova S, Shalakhmetova T, Rahimi G.

Clin Lab. 2013;59(9-10):1159-66.


Multiple sequence alignment with DIALIGN.

Morgenstern B.

Methods Mol Biol. 2014;1079:191-202. doi: 10.1007/978-1-62703-646-7_12.


Iothalamate versus estimated GFR in a Hispanic-dominant pediatric renal transplant population.

Papez KE, Barletta GM, Hsieh S, Joseph M, Morgenstern BZ.

Pediatr Nephrol. 2013 Dec;28(12):2369-76.


Formation and base hydrolysis of oxidimethaneamine bridges in CoIII-amine complexes.

Morgenstern B, Neis C, Zaschka A, Romba J, Weyhermüller T, Hegetschweiler K.

Inorg Chem. 2013 Oct 21;52(20):12080-97. doi: 10.1021/ic4019053. Epub 2013 Oct 2.


DIALIGN at GOBICS--multiple sequence alignment using various sources of external information.

Al Ait L, Yamak Z, Morgenstern B.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W3-7. doi: 10.1093/nar/gkt283. Epub 2013 Apr 24.


Viability of human ovarian tissue confirmed 5 years after freezing with spontaneous ice-formation by autografting and chorio-allantoic membrane culture.

Isachenko V, Orth I, Isachenko E, Mallmann P, Peters D, Schmidt T, Morgenstern B, Foth D, Hanstein B, Rahimi G.

Cryobiology. 2013 Jun;66(3):233-8. doi: 10.1016/j.cryobiol.2013.02.003. Epub 2013 Feb 20.


jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.

Schultz AK, Bulla I, Abdou-Chekaraou M, Gordien E, Morgenstern B, Zoaulim F, Dény P, Stanke M.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W193-8. doi: 10.1093/nar/gks414. Epub 2012 May 16.


MolabIS--an integrated information system for storing and managing molecular genetics data.

Truong CV, Groeneveld LF, Morgenstern B, Groeneveld E.

BMC Bioinformatics. 2011 Oct 31;12:425. doi: 10.1186/1471-2105-12-425.


Identification of novel plant peroxisomal targeting signals by a combination of machine learning methods and in vivo subcellular targeting analyses.

Lingner T, Kataya AR, Antonicelli GE, Benichou A, Nilssen K, Chen XY, Siemsen T, Morgenstern B, Meinicke P, Reumann S.

Plant Cell. 2011 Apr;23(4):1556-72. doi: 10.1105/tpc.111.084095. Epub 2011 Apr 12.


Detection of viral sequence fragments of HIV-1 subfamilies yet unknown.

Unterthiner T, Schultz AK, Bulla J, Morgenstern B, Stanke M, Bulla I.

BMC Bioinformatics. 2011 Apr 11;12:93. doi: 10.1186/1471-2105-12-93.


5'TRU: identification and analysis of translationally regulative 5'untranslated regions in amino acid starved yeast cells.

Rachfall N, Heinemeyer I, Morgenstern B, Valerius O, Braus GH.

Mol Cell Proteomics. 2011 Jun;10(6):M110.003350. doi: 10.1074/mcp.M110.003350. Epub 2011 Mar 28.


Facially coordinating triamine ligands with a cyclic backbone: some structure-stability correlations.

Neis C, Petry D, Demangeon A, Morgenstern B, Kuppert D, Huppert J, Stucky S, Hegetschweiler K.

Inorg Chem. 2010 Nov 1;49(21):10092-107. doi: 10.1021/ic101360d.


DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS.

Subramanian AR, Hiran S, Steinkamp R, Meinicke P, Corel E, Morgenstern B.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W19-22. doi: 10.1093/nar/gkq442. Epub 2010 May 23.


HIV classification using the coalescent theory.

Bulla I, Schultz AK, Schreiber F, Zhang M, Leitner T, Korber B, Morgenstern B, Stanke M.

Bioinformatics. 2010 Jun 1;26(11):1409-15. doi: 10.1093/bioinformatics/btq159. Epub 2010 Apr 16.


Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships.

Pick KS, Philippe H, Schreiber F, Erpenbeck D, Jackson DJ, Wrede P, Wiens M, Alié A, Morgenstern B, Manuel M, Wörheide G.

Mol Biol Evol. 2010 Sep;27(9):1983-7. doi: 10.1093/molbev/msq089. Epub 2010 Apr 8.


The role of recombination in the emergence of a complex and dynamic HIV epidemic.

Zhang M, Foley B, Schultz AK, Macke JP, Bulla I, Stanke M, Morgenstern B, Korber B, Leitner T.

Retrovirology. 2010 Mar 23;7:25. doi: 10.1186/1742-4690-7-25.


A min-cut algorithm for the consistency problem in multiple sequence alignment.

Corel E, Pitschi F, Morgenstern B.

Bioinformatics. 2010 Apr 15;26(8):1015-21. doi: 10.1093/bioinformatics/btq082. Epub 2010 Feb 25.


Chelation versus binucleation: metal complex formation with the hexadentate all-cis-N1,N2-bis(2,4,6-trihydroxy-3,5-diaminocyclohexyl)ethane-1,2-diamine.

Bartholomä M, Gisbrecht S, Stucky S, Neis C, Morgenstern B, Hegetschweiler K.

Chemistry. 2010 Mar 15;16(11):3326-40. doi: 10.1002/chem.200902552.


Relationships between drug company representatives and medical students: medical school policies and attitudes of student affairs deans and third-year medical students.

Sierles F, Brodkey A, Cleary L, McCurdy FA, Mintz M, Frank J, Lynn DJ, Chao J, Morgenstern B, Shore W, Woodard J.

Acad Psychiatry. 2009 Nov-Dec;33(6):478-83. doi: 10.1176/appi.ap.33.6.478.


OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.

Schreiber F, Pick K, Erpenbeck D, Wörheide G, Morgenstern B.

BMC Bioinformatics. 2009 Jul 16;10:219. doi: 10.1186/1471-2105-10-219.


OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences.

Schreiber F, Wörheide G, Morgenstern B.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W185-8. doi: 10.1093/nar/gkp434. Epub 2009 Jun 2.


jpHMM: improving the reliability of recombination prediction in HIV-1.

Schultz AK, Zhang M, Bulla I, Leitner T, Korber B, Morgenstern B, Stanke M.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W647-51. doi: 10.1093/nar/gkp371. Epub 2009 May 14. Erratum in: Nucleic Acids Res. 2010 Jan 1;38(3):1059.


Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems.

Schmeisser C, Liesegang H, Krysciak D, Bakkou N, Le Quéré A, Wollherr A, Heinemeyer I, Morgenstern B, Pommerening-Röser A, Flores M, Palacios R, Brenner S, Gottschalk G, Schmitz RA, Broughton WJ, Perret X, Strittmatter AW, Streit WR.

Appl Environ Microbiol. 2009 Jun;75(12):4035-45. doi: 10.1128/AEM.00515-09. Epub 2009 Apr 17.


Phylogenomics revives traditional views on deep animal relationships.

Philippe H, Derelle R, Lopez P, Pick K, Borchiellini C, Boury-Esnault N, Vacelet J, Renard E, Houliston E, Quéinnec E, Da Silva C, Wincker P, Le Guyader H, Leys S, Jackson DJ, Schreiber F, Erpenbeck D, Morgenstern B, Wörheide G, Manuel M.

Curr Biol. 2009 Apr 28;19(8):706-12. doi: 10.1016/j.cub.2009.02.052. Epub 2009 Apr 2.


Redetermination of bis[mu(3)-1,3,5-triamino-1,3,5-trideoxy-cis-inositolato(3-)]tribismuth(III) trichloride hexahydrate.

Hegetschweiler K, Stucky S, Morgenstern B, Neis C, Weyhermüller T.

Acta Crystallogr C. 2009 Jan;65(Pt 1):m1-3. doi: 10.1107/S0108270108039772. Epub 2008 Dec 6.


Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family.

Wagner H, Morgenstern B, Dress A.

Algorithms Mol Biol. 2008 Nov 6;3:15. doi: 10.1186/1748-7188-3-15.

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