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Physiological and RNA sequencing data of white lupin plants grown under Fe and P deficiency.

Zanin L, Venuti S, Marroni F, Franco A, Morgante M, Pinton R, Tomasi N.

Data Brief. 2019 May 28;25:104069. doi: 10.1016/j.dib.2019.104069. eCollection 2019 Aug.


Physiological and transcriptomic data highlight common features between iron and phosphorus acquisition mechanisms in white lupin roots.

Venuti S, Zanin L, Marroni F, Franco A, Morgante M, Pinton R, Tomasi N.

Plant Sci. 2019 Aug;285:110-121. doi: 10.1016/j.plantsci.2019.04.026. Epub 2019 May 3.


Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties.

Magris G, Di Gaspero G, Marroni F, Zenoni S, Tornielli GB, Celii M, De Paoli E, Pezzotti M, Conte F, Paci P, Morgante M.

Plant J. 2019 Apr 29. doi: 10.1111/tpj.14370. [Epub ahead of print]


Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm.

Vendramin V, Ormanbekova D, Scalabrin S, Scaglione D, Maccaferri M, Martelli P, Salvi S, Jurman I, Casadio R, Cattonaro F, Tuberosa R, Massi A, Morgante M.

BMC Genomics. 2019 Apr 10;20(1):278. doi: 10.1186/s12864-019-5645-x.


Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize.

Scaglione D, Pinosio S, Marroni F, Centa ED, Fornasiero A, Magris G, Scalabrin S, Cattonaro F, Taylor G, Morgante M.

Ann Bot. 2019 Mar 30. pii: mcz054. doi: 10.1093/aob/mcz054. [Epub ahead of print]


WITHDRAWN: Detection of digital and interdigital dermatitis in Holstein Frisian dairy cows by means of infrared thermography.

Piccione G, Arfuso F, Fiore E, Giudice E, Morgante M, Giambelluca S, Gianesella M.

J Vet Sci. 2018 Oct 8. [Epub ahead of print]


Ultrasonographic measurement of liver, portal vein, hepatic vein and perivisceral adipose tissue in high-yielding dairy cows with fatty liver during the transition period.

Fiore E, Perillo L, Morgante M, Giudice E, Contiero B, Curone G, Manuali E, Pavone S, Piccione G, Gianesella M.

J Dairy Res. 2018 Nov;85(4):431-438. doi: 10.1017/S0022029918000754. Epub 2018 Oct 8.


Metabolic and hormonal adaptation in Bubalus bubalis around calving and early lactation.

Fiore E, Arfuso F, Gianesella M, Vecchio D, Morgante M, Mazzotta E, Badon T, Rossi P, Bedin S, Piccione G.

PLoS One. 2018 Apr 4;13(4):e0193803. doi: 10.1371/journal.pone.0193803. eCollection 2018.


A versatile method for gene dosage quantification: multiplex PCR and single base extension for copy number and gene-conversion identification of SMN genes.

Radovic S, Dubsky De Wittenau G, Mandl N, Betto E, Curcio F, Morgante M, Lonigro IR.

J Biol Regul Homeost Agents. 2018 Jan-Feb;32(1):115-121.


Grapevine field experiments reveal the contribution of genotype, the influence of environment and the effect of their interaction (G×E) on the berry transcriptome.

Dal Santo S, Zenoni S, Sandri M, De Lorenzis G, Magris G, De Paoli E, Di Gaspero G, Del Fabbro C, Morgante M, Brancadoro L, Grossi D, Fasoli M, Zuccolotto P, Tornielli GB, Pezzotti M.

Plant J. 2018 Mar;93(6):1143-1159. doi: 10.1111/tpj.13834. Epub 2018 Mar 5.


A PLAG1 mutation contributed to stature recovery in modern cattle.

Utsunomiya YT, Milanesi M, Utsunomiya ATH, Torrecilha RBP, Kim ES, Costa MS, Aguiar TS, Schroeder S, do Carmo AS, Carvalheiro R, Neves HHR, Padula RCM, Sussai TS, Zavarez LB, Cipriano RS, Caminhas MMT, Hambrecht G, Colli L, Eufemi E, Ajmone-Marsan P, Cesana D, Sannazaro M, Buora M, Morgante M, Liu G, Bickhart D, Van Tassell CP, Sölkner J, Sonstegard TS, Garcia JF.

Sci Rep. 2017 Dec 7;7(1):17140. doi: 10.1038/s41598-017-17127-1.


Regeneration of the entire human epidermis using transgenic stem cells.

Hirsch T, Rothoeft T, Teig N, Bauer JW, Pellegrini G, De Rosa L, Scaglione D, Reichelt J, Klausegger A, Kneisz D, Romano O, Secone Seconetti A, Contin R, Enzo E, Jurman I, Carulli S, Jacobsen F, Luecke T, Lehnhardt M, Fischer M, Kueckelhaus M, Quaglino D, Morgante M, Bicciato S, Bondanza S, De Luca M.

Nature. 2017 Nov 16;551(7680):327-332. doi: 10.1038/nature24487. Epub 2017 Nov 8.


Short communication: Association between udder health status and blood serum proteins in dairy cows.

Bobbo T, Ruegg PL, Fiore E, Gianesella M, Morgante M, Pasotto D, Gallo L, Bittante G, Cecchinato A.

J Dairy Sci. 2017 Dec;100(12):9775-9780. doi: 10.3168/jds.2017-13111. Epub 2017 Oct 12.


A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3).

Canaguier A, Grimplet J, Di Gaspero G, Scalabrin S, Duchêne E, Choisne N, Mohellibi N, Guichard C, Rombauts S, Le Clainche I, Bérard A, Chauveau A, Bounon R, Rustenholz C, Morgante M, Le Paslier MC, Brunel D, Adam-Blondon AF.

Genom Data. 2017 Sep 18;14:56-62. doi: 10.1016/j.gdata.2017.09.002. eCollection 2017 Dec. No abstract available.


Changes in some blood parameters, milk composition and yield of buffaloes (Bubalus bubalis) during the transition period.

Fiore E, Giambelluca S, Morgante M, Contiero B, Mazzotta E, Vecchio D, Vazzana I, Rossi P, Arfuso F, Piccione G, Gianesella M.

Anim Sci J. 2017 Dec;88(12):2025-2032. doi: 10.1111/asj.12872. Epub 2017 Aug 4.


De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock.

Evangelistella C, Valentini A, Ludovisi R, Firrincieli A, Fabbrini F, Scalabrin S, Cattonaro F, Morgante M, Mugnozza GS, Keurentjes JJB, Harfouche A.

Biotechnol Biofuels. 2017 May 30;10:138. doi: 10.1186/s13068-017-0828-7. eCollection 2017.


Variation in blood serum proteins and association with somatic cell count in dairy cattle from multi-breed herds.

Bobbo T, Fiore E, Gianesella M, Morgante M, Gallo L, Ruegg PL, Bittante G, Cecchinato A.

Animal. 2017 Dec;11(12):2309-2319. doi: 10.1017/S1751731117001227. Epub 2017 May 31.


Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.

Wildhagen H, Paul S, Allwright M, Smith HK, Malinowska M, Schnabel SK, Paulo MJ, Cattonaro F, Vendramin V, Scalabrin S, Janz D, Douthe C, Brendel O, Buré C, Cohen D, Hummel I, Le Thiec D, van Eeuwijk F, Keurentjes JJB, Flexas J, Morgante M, Robson P, Bogeat-Triboulot MB, Taylor G, Polle A.

Tree Physiol. 2018 Mar 1;38(3):320-339. doi: 10.1093/treephys/tpx054.


Associations between pathogen-specific cases of subclinical mastitis and milk yield, quality, protein composition, and cheese-making traits in dairy cows.

Bobbo T, Ruegg PL, Stocco G, Fiore E, Gianesella M, Morgante M, Pasotto D, Bittante G, Cecchinato A.

J Dairy Sci. 2017 Jun;100(6):4868-4883. doi: 10.3168/jds.2016-12353. Epub 2017 Mar 30.


Alexithymia and personality traits of patients with inflammatory bowel disease.

La Barbera D, Bonanno B, Rumeo MV, Alabastro V, Frenda M, Massihnia E, Morgante MC, Sideli L, Craxì A, Cappello M, Tumminello M, Miccichè S, Nastri L.

Sci Rep. 2017 Feb 2;7:41786. doi: 10.1038/srep41786.


Evaluation of venous blood gas levels, blood chemistry and haemocytometric parameters in milk fed veal calves at different periods of livestock cycle.

Giambelluca S, Fiore E, Sadocco A, Gianesella M, Vazzana I, Orefice T, Morgante M.

Pol J Vet Sci. 2016 Dec 1;19(4):745-752. doi: 10.1515/pjvs-2016-0094.


Reduction of heterozygosity (ROH) as a method to detect mosaic structural variation.

Marroni F, Scaglione D, Pinosio S, Policriti A, Miculan M, Di Gaspero G, Morgante M.

Plant Biotechnol J. 2017 Jul;15(7):791-793. doi: 10.1111/pbi.12691. Epub 2017 Mar 16. No abstract available.


Growth Plate Lesions of Fattening Bulls.

Levi M, Dittmer KE, Gentile A, Beltrame A, Bolcato M, Morgante M, Fiore E, Benazzi C.

Vet Pathol. 2017 May;54(3):437-444. doi: 10.1177/0300985816684915. Epub 2016 Dec 22.


Effect of combined acetylmethionine, cyanocobalamin and α-lipoic acid on hepatic metabolism in high-yielding dairy cow.

Fiore E, Perillo L, Piccione G, Gianesella M, Bedin S, Armato L, Giudice E, Morgante M.

J Dairy Res. 2016 Nov;83(4):438-441.


Texture analysis of B-mode ultrasound images to stage hepatic lipidosis in the dairy cow: A methodological study.

Banzato T, Fiore E, Morgante M, Manuali E, Zotti A.

Res Vet Sci. 2016 Oct;108:71-5. doi: 10.1016/j.rvsc.2016.08.007. Epub 2016 Aug 25.


Biomass traits and candidate genes for bioenergy revealed through association genetics in coppiced European Populus nigra (L.).

Allwright MR, Payne A, Emiliani G, Milner S, Viger M, Rouse F, Keurentjes JJ, Bérard A, Wildhagen H, Faivre-Rampant P, Polle A, Morgante M, Taylor G.

Biotechnol Biofuels. 2016 Sep 8;9(1):195. doi: 10.1186/s13068-016-0603-1. eCollection 2016.


Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation.

Pinosio S, Giacomello S, Faivre-Rampant P, Taylor G, Jorge V, Le Paslier MC, Zaina G, Bastien C, Cattonaro F, Marroni F, Morgante M.

Mol Biol Evol. 2016 Oct;33(10):2706-19. doi: 10.1093/molbev/msw161. Epub 2016 Aug 7.


A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence.

Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N.

Plant Physiol. 2016 Jun;171(2):1113-27. doi: 10.1104/pp.16.00124. Epub 2016 Apr 14.


Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies.

Chen J, Källman T, Ma XF, Zaina G, Morgante M, Lascoux M.

G3 (Bethesda). 2016 Jul 7;6(7):1979-89. doi: 10.1534/g3.116.028753.


New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array.

Faivre-Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier MC, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M.

Mol Ecol Resour. 2016 Jul;16(4):1023-36. doi: 10.1111/1755-0998.12513. Epub 2016 Mar 24.


Evaluation of the udder health status in subclinical mastitis affected dairy cows through bacteriological culture, somatic cell count and thermographic imaging.

Bortolami A, Fiore E, Gianesella M, Corrò M, Catania S, Morgante M.

Pol J Vet Sci. 2015;18(4):799-805. doi: 10.1515/pjvs-2015-0104.


Methaphylactic effect of tulathromycin treatment on rumen fluid parameters in feedlot beef cattle.

Fiore E, Armato L, Morgante M, Muraro M, Boso M, Gianesella M.

Can J Vet Res. 2016 Jan;80(1):60-5.


Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays.

Dell'Acqua M, Gatti DM, Pea G, Cattonaro F, Coppens F, Magris G, Hlaing AL, Aung HH, Nelissen H, Baute J, Frascaroli E, Churchill GA, Inzé D, Morgante M, Pè ME.

Genome Biol. 2015 Sep 11;16:167. doi: 10.1186/s13059-015-0716-z.


Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome.

Sanseverino W, Hénaff E, Vives C, Pinosio S, Burgos-Paz W, Morgante M, Ramos-Onsins SE, Garcia-Mas J, Casacuberta JM.

Mol Biol Evol. 2015 Oct;32(10):2760-74. doi: 10.1093/molbev/msv152. Epub 2015 Jul 14.


The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution.

Zuccolo A, Scofield DG, De Paoli E, Morgante M.

Gene. 2015 Aug 15;568(1):89-99. doi: 10.1016/j.gene.2015.05.028. Epub 2015 May 14.


LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.

Barghini E, Natali L, Giordani T, Cossu RM, Scalabrin S, Cattonaro F, Šimková H, Vrána J, Doležel J, Morgante M, Cavallini A.

DNA Res. 2015 Feb;22(1):91-100. doi: 10.1093/dnares/dsu042. Epub 2014 Nov 26.


A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding.

Maccaferri M, Ricci A, Salvi S, Milner SG, Noli E, Martelli PL, Casadio R, Akhunov E, Scalabrin S, Vendramin V, Ammar K, Blanco A, Desiderio F, Distelfeld A, Dubcovsky J, Fahima T, Faris J, Korol A, Massi A, Mastrangelo AM, Morgante M, Pozniak C, N'Diaye A, Xu S, Tuberosa R.

Plant Biotechnol J. 2015 Jun;13(5):648-63. doi: 10.1111/pbi.12288. Epub 2014 Nov 26.


A Picea abies linkage map based on SNP markers identifies QTLs for four aspects of resistance to Heterobasidion parviporum infection.

Lind M, Källman T, Chen J, Ma XF, Bousquet J, Morgante M, Zaina G, Karlsson B, Elfstrand M, Lascoux M, Stenlid J.

PLoS One. 2014 Jul 18;9(7):e101049. doi: 10.1371/journal.pone.0101049. eCollection 2014.


Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.

Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D.

Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906. Epub 2014 Jun 8.


The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome.

Barghini E, Natali L, Cossu RM, Giordani T, Pindo M, Cattonaro F, Scalabrin S, Velasco R, Morgante M, Cavallini A.

Genome Biol Evol. 2014 Apr;6(4):776-91. doi: 10.1093/gbe/evu058.


Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array.

Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, Mastrangelo AM, Whan A, Stephen S, Barker G, Wieseke R, Plieske J; International Wheat Genome Sequencing Consortium, Lillemo M, Mather D, Appels R, Dolferus R, Brown-Guedira G, Korol A, Akhunova AR, Feuillet C, Salse J, Morgante M, Pozniak C, Luo MC, Dvorak J, Morell M, Dubcovsky J, Ganal M, Tuberosa R, Lawley C, Mikoulitch I, Cavanagh C, Edwards KJ, Hayden M, Akhunov E.

Plant Biotechnol J. 2014 Aug;12(6):787-96. doi: 10.1111/pbi.12183. Epub 2014 Mar 20.


Enhancing postgraduate learning and teaching: postgraduate summer school in dairy science.

Celi P, Gabai G, Morgante M, Gallo L.

Vet Med Int. 2014;2014:409549. doi: 10.1155/2014/409549. Epub 2014 Jan 16.


Structural variation and genome complexity: is dispensable really dispensable?

Marroni F, Pinosio S, Morgante M.

Curr Opin Plant Biol. 2014 Apr;18:31-6. doi: 10.1016/j.pbi.2014.01.003. Epub 2014 Feb 16. Review.


An extensive evaluation of read trimming effects on Illumina NGS data analysis.

Del Fabbro C, Scalabrin S, Morgante M, Giorgi FM.

PLoS One. 2013 Dec 23;8(12):e85024. doi: 10.1371/journal.pone.0085024. eCollection 2013.


The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads.

Natali L, Cossu RM, Barghini E, Giordani T, Buti M, Mascagni F, Morgante M, Gill N, Kane NC, Rieseberg L, Cavallini A.

BMC Genomics. 2013 Oct 6;14:686. doi: 10.1186/1471-2164-14-686.


Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach.

Falchi R, Vendramin E, Zanon L, Scalabrin S, Cipriani G, Verde I, Vizzotto G, Morgante M.

Plant J. 2013 Oct;76(2):175-87. doi: 10.1111/tpj.12283. Epub 2013 Aug 8.


Influence of temperature and humidity on rumen pH and fatty acids in dairy cows.

Gianesella M, Piccione G, Cannizzo C, Casella S, Morgante M.

J Environ Biol. 2012 Nov;33(6):1093-6.


The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.


Effect of induced ruminal acidosis on blood variables in heifers.

Marchesini G, De Nardi R, Gianesella M, Stefani AL, Morgante M, Barberio A, Andrighetto I, Segato S.

BMC Vet Res. 2013 May 6;9:98. doi: 10.1186/1746-6148-9-98.


Historical introgression of the downy mildew resistance gene Rpv12 from the Asian species Vitis amurensis into grapevine varieties.

Venuti S, Copetti D, Foria S, Falginella L, Hoffmann S, Bellin D, Cindrić P, Kozma P, Scalabrin S, Morgante M, Testolin R, Di Gaspero G.

PLoS One. 2013 Apr 12;8(4):e61228. doi: 10.1371/journal.pone.0061228. Print 2013.

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