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Items: 1 to 50 of 53

1.

Marine Archaeon Methanosarcina acetivorans Enhances Polyphosphate Metabolism Under Persistent Cadmium Stress.

Jasso-Chávez R, Lira-Silva E, González-Sánchez K, Larios-Serrato V, Mendoza-Monzoy DL, Pérez-Villatoro F, Morett E, Vega-Segura A, Torres-Márquez ME, Zepeda-Rodríguez A, Moreno-Sánchez R.

Front Microbiol. 2019 Oct 24;10:2432. doi: 10.3389/fmicb.2019.02432. eCollection 2019.

2.

Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing.

Romero-Hidalgo S, Ochoa-Leyva A, Garcíarrubio A, Acuña-Alonzo V, Antúnez-Argüelles E, Balcazar-Quintero M, Barquera-Lozano R, Carnevale A, Cornejo-Granados F, Fernández-López JC, García-Herrera R, García-Ortíz H, Granados-Silvestre Á, Granados J, Guerrero-Romero F, Hernández-Lemus E, León-Mimila P, Macín-Pérez G, Martínez-Hernández A, Menjivar M, Morett E, Orozco L, Ortíz-López G, Pérez-Villatoro F, Rivera-Morales J, Riveros-McKay F, Villalobos-Comparán M, Villamil-Ramírez H, Villarreal-Molina T, Canizales-Quinteros S, Soberón X.

Nat Commun. 2017 Oct 18;8(1):1005. doi: 10.1038/s41467-017-01194-z.

3.

Acetate biostimulation as an effective treatment for cleaning up alkaline soil highly contaminated with Cr(VI).

Lara P, Morett E, Juárez K.

Environ Sci Pollut Res Int. 2017 Nov;24(33):25513-25521. doi: 10.1007/s11356-016-7191-2. Epub 2016 Aug 15.

PMID:
27525740
4.

Global transcriptional start site mapping in Geobacter sulfurreducens during growth with two different electron acceptors.

González G, Labastida A, Jímenez-Jacinto V, Vega-Alvarado L, Olvera M, Morett E, Juárez K.

FEMS Microbiol Lett. 2016 Sep;363(17). pii: fnw175. doi: 10.1093/femsle/fnw175. Epub 2016 Aug 3.

PMID:
27488344
5.

The unphosphorylated form of the PilR two-component system regulates pilA gene expression in Geobacter sulfurreducens.

Hernández-Eligio A, Andrade Á, Soto L, Morett E, Juárez K.

Environ Sci Pollut Res Int. 2017 Nov;24(33):25693-25701. doi: 10.1007/s11356-016-6192-5. Epub 2016 Feb 18.

PMID:
26888530
6.

Structural properties of prokaryotic promoter regions correlate with functional features.

Meysman P, Collado-Vides J, Morett E, Viola R, Engelen K, Laukens K.

PLoS One. 2014 Feb 7;9(2):e88717. doi: 10.1371/journal.pone.0088717. eCollection 2014.

7.

Exopolyphosphatase of Pseudomonas aeruginosa is essential for the production of virulence factors, and its expression is controlled by NtrC and PhoB acting at two interspaced promoters.

Gallarato LA, Sánchez DG, Olvera L, Primo ED, Garrido MN, Beassoni PR, Morett E, Lisa AT.

Microbiology. 2014 Feb;160(Pt 2):406-17. doi: 10.1099/mic.0.074773-0. Epub 2013 Nov 25.

PMID:
24275100
8.

Transcription factors in Escherichia coli prefer the holo conformation.

Balderas-Martínez YI, Savageau M, Salgado H, Pérez-Rueda E, Morett E, Collado-Vides J.

PLoS One. 2013 Jun 12;8(6):e65723. doi: 10.1371/journal.pone.0065723. Print 2013. Erratum in: PLoS One. 2013;8(8). doi:10.1371/annotation/96d7b9a4-aa2e-4593-ae8a-7c14d134e29c.

9.

Evidence classification of high-throughput protocols and confidence integration in RegulonDB.

Weiss V, Medina-Rivera A, Huerta AM, Santos-Zavaleta A, Salgado H, Morett E, Collado-Vides J.

Database (Oxford). 2013 Jan 17;2013:bas059. doi: 10.1093/database/bas059. Print 2013.

10.

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J.

Nucleic Acids Res. 2013 Jan;41(Database issue):D203-13. doi: 10.1093/nar/gks1201. Epub 2012 Nov 29.

11.

Genetic changes during a laboratory adaptive evolution process that allowed fast growth in glucose to an Escherichia coli strain lacking the major glucose transport system.

Aguilar C, Escalante A, Flores N, de Anda R, Riveros-McKay F, Gosset G, Morett E, Bolívar F.

BMC Genomics. 2012 Aug 10;13:385. doi: 10.1186/1471-2164-13-385.

12.

Evolution of a new function in an esterase: simple amino acid substitutions enable the activity present in the larger paralog, BioH.

Flores H, Lin S, Contreras-Ferrat G, Cronan JE, Morett E.

Protein Eng Des Sel. 2012 Aug;25(8):387-95. doi: 10.1093/protein/gzs035. Epub 2012 Jun 12.

PMID:
22691705
13.

Transcriptional regulation of the assT-dsbL-dsbI gene cluster in Salmonella enterica serovar Typhi IMSS-1 depends on LeuO, H-NS, and specific growth conditions.

Gallego-Hernández AL, Hernández-Lucas I, De la Cruz MA, Olvera L, Morett E, Medina-Aparicio L, Ramírez-Trujillo JA, Vázquez A, Fernández-Mora M, Calva E.

J Bacteriol. 2012 May;194(9):2254-64. doi: 10.1128/JB.06164-11. Epub 2012 Feb 17.

14.

Evolutionary walk between (β/α)(8) barrels: catalytic migration from triosephosphate isomerase to thiamin phosphate synthase.

Saab-Rincón G, Olvera L, Olvera M, Rudiño-Piñera E, Benites E, Soberón X, Morett E.

J Mol Biol. 2012 Feb 17;416(2):255-70. doi: 10.1016/j.jmb.2011.12.042. Epub 2011 Dec 28.

PMID:
22226942
15.

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).

Gama-Castro S, Salgado H, Peralta-Gil M, Santos-Zavaleta A, Muñiz-Rascado L, Solano-Lira H, Jimenez-Jacinto V, Weiss V, García-Sotelo JS, López-Fuentes A, Porrón-Sotelo L, Alquicira-Hernández S, Medina-Rivera A, Martínez-Flores I, Alquicira-Hernández K, Martínez-Adame R, Bonavides-Martínez C, Miranda-Ríos J, Huerta AM, Mendoza-Vargas A, Collado-Torres L, Taboada B, Vega-Alvarado L, Olvera M, Olvera L, Grande R, Morett E, Collado-Vides J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D98-105. doi: 10.1093/nar/gkq1110. Epub 2010 Nov 4.

16.

Choline catabolism, σ⁵⁴ factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene.

Massimelli MJ, Sánchez DG, Buchieri MV, Olvera L, Beassoni PR, Schweizer HP, Morett E, Lisa AT.

Microbiol Res. 2011 Jul 20;166(5):380-90. doi: 10.1016/j.micres.2010.07.004. Epub 2010 Oct 12.

17.

Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.

Mendoza-Vargas A, Olvera L, Olvera M, Grande R, Vega-Alvarado L, Taboada B, Jimenez-Jacinto V, Salgado H, Juárez K, Contreras-Moreira B, Huerta AM, Collado-Vides J, Morett E.

PLoS One. 2009 Oct 19;4(10):e7526. doi: 10.1371/journal.pone.0007526.

18.

Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation.

Olvera L, Mendoza-Vargas A, Flores N, Olvera M, Sigala JC, Gosset G, Morett E, Bolívar F.

PLoS One. 2009 Oct 19;4(10):e7466. doi: 10.1371/journal.pone.0007466.

19.

Bioinformatics resources for the study of gene regulation in bacteria.

Collado-Vides J, Salgado H, Morett E, Gama-Castro S, Jiménez-Jacinto V, Martínez-Flores I, Medina-Rivera A, Muñiz-Rascado L, Peralta-Gil M, Santos-Zavaleta A.

J Bacteriol. 2009 Jan;191(1):23-31. doi: 10.1128/JB.01017-08. Epub 2008 Oct 31. Review. No abstract available.

20.

Inferring modules of functionally interacting proteins using the Bond Energy Algorithm.

Watanabe RL, Morett E, Vallejo EE.

BMC Bioinformatics. 2008 Jun 17;9:285. doi: 10.1186/1471-2105-9-285.

21.

Sensitive genome-wide screen for low secondary enzymatic activities: the YjbQ family shows thiamin phosphate synthase activity.

Morett E, Saab-Rincón G, Olvera L, Olvera M, Flores H, Grande R.

J Mol Biol. 2008 Feb 22;376(3):839-53. doi: 10.1016/j.jmb.2007.12.017. Epub 2007 Dec 15.

PMID:
18178222
22.

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H, Bonavides-Martínez C, Abreu-Goodger C, Rodríguez-Penagos C, Miranda-Ríos J, Morett E, Merino E, Huerta AM, Treviño-Quintanilla L, Collado-Vides J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D120-4. Epub 2007 Dec 23.

23.

Insights on the evolution of trehalose biosynthesis.

Avonce N, Mendoza-Vargas A, Morett E, Iturriaga G.

BMC Evol Biol. 2006 Dec 19;6:109.

24.

Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes.

Huerta AM, Francino MP, Morett E, Collado-Vides J.

PLoS Genet. 2006 Nov 10;2(11):e185. Epub 2006 Sep 12.

25.

A role for the conserved GAFTGA motif of AAA+ transcription activators in sensing promoter DNA conformation.

Dago AE, Wigneshweraraj SR, Buck M, Morett E.

J Biol Chem. 2007 Jan 12;282(2):1087-97. Epub 2006 Nov 6.

26.

Multiple regulators of the Flavohaemoglobin (hmp) gene of Salmonella enterica serovar Typhimurium include RamA, a transcriptional regulator conferring the multidrug resistance phenotype.

Hernández-Urzúa E, Zamorano-Sánchez DS, Ponce-Coria J, Morett E, Grogan S, Poole RK, Membrillo-Hernández J.

Arch Microbiol. 2007 Jan;187(1):67-77. Epub 2006 Oct 6.

PMID:
17024490
27.

The genome project of Taenia solium.

Aguilar-Díaz H, Bobes RJ, Carrero JC, Camacho-Carranza R, Cervantes C, Cevallos MA, Dávila G, Rodríguez-Dorantes M, Escobedo G, Fernández JL, Fragoso G, Gaytán P, Garciarubio A, González VM, González L, José MV, Jiménez L, Laclette JP, Landa A, Larralde C, Morales-Montor J, Morett E, Ostoa-Saloma P, Sciutto E, Santamaría RI, Soberón X, de la Torre P, Valdés V, Yánez J.

Parasitol Int. 2006;55 Suppl:S127-30. Epub 2005 Dec 6. Review.

PMID:
16337432
28.

Improving random mutagenesis by purification of the oligonucleotide variants.

Gaytán P, Yáñez J, Grande R, Morett E, Soberón X.

Comb Chem High Throughput Screen. 2005 Sep;8(6):537-44.

PMID:
16178813
29.

Shuffled: a software suite that assists the analysis of recombinant products resulting from DNA shuffling.

Morett E, Garciarrubio AG.

Biotechniques. 2004 Sep;37(3):354, 356, 358. No abstract available.

30.
31.

GeConT: gene context analysis.

Ciria R, Abreu-Goodger C, Morett E, Merino E.

Bioinformatics. 2004 Sep 22;20(14):2307-8. Epub 2004 Apr 8.

PMID:
15073003
32.

Systematic discovery of analogous enzymes in thiamin biosynthesis.

Morett E, Korbel JO, Rajan E, Saab-Rincon G, Olvera L, Olvera M, Schmidt S, Snel B, Bork P.

Nat Biotechnol. 2003 Jul;21(7):790-5. Epub 2003 Jun 8.

PMID:
12794638
33.

Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action.

Chaney M, Grande R, Wigneshweraraj SR, Cannon W, Casaz P, Gallegos MT, Schumacher J, Jones S, Elderkin S, Dago AE, Morett E, Buck M.

Genes Dev. 2001 Sep 1;15(17):2282-94.

34.

Reciprocal domain evolution within a transactivator in a restricted sequence space.

Juarez K, Flores H, Dávila S, Olvera L, González V, Morett E.

Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3314-8.

35.
36.

Compilation and analysis of sigma(54)-dependent promoter sequences.

Barrios H, Valderrama B, Morett E.

Nucleic Acids Res. 1999 Nov 15;27(22):4305-13.

37.

A novel transactivation domain in parkin.

Morett E, Bork P.

Trends Biochem Sci. 1999 Jun;24(6):229-31. No abstract available.

PMID:
10366851
41.

Did cyclodextrin glycosyltransferases evolve from alpha-amylases?

del-Rio G, Morett E, Soberon X.

FEBS Lett. 1997 Oct 20;416(2):221-4.

43.

Regulatory proteins and cis-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes.

Valderrama B, Dávalos A, Girard L, Morett E, Mora J.

J Bacteriol. 1996 Jun;178(11):3119-26.

44.
45.
46.
47.

The influence of the Klebsiella pneumoniae regulatory gene nifL upon the transcriptional activator protein NifA.

Morett E, Kreutzer R, Cannon W, Buck M.

Mol Microbiol. 1990 Aug;4(8):1253-8.

PMID:
2280685
48.

Activation of the Klebsiella pneumoniae nifU promoter: identification of multiple and overlapping upstream NifA binding sites.

Cannon WV, Kreutzer R, Kent HM, Morett E, Buck M.

Nucleic Acids Res. 1990 Apr 11;18(7):1693-701.

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