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Exploring protein myristoylation in Toxoplasma gondii.

Alonso AM, Turowski VR, Ruiz DM, Orelo BD, Moresco JJ, Yates JR 3rd, Corvi MM.

Exp Parasitol. 2019 Aug;203:8-18. doi: 10.1016/j.exppara.2019.05.007. Epub 2019 May 28.


A Non-Dicer RNase III and Four Other Novel Factors Required for RNAi-Mediated Transposon Suppression in the Human Pathogenic Yeast Cryptococcus neoformans.

Burke JE, Longhurst AD, Natarajan P, Rao B, Liu J, Sales-Lee J, Mortensen Y, Moresco JJ, Diedrich JK, Yates JR 3rd, Madhani HD.

G3 (Bethesda). 2019 Jul 9;9(7):2235-2244. doi: 10.1534/g3.119.400330.


A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics.

Santos MDM, Lima DB, Silva ARF, Kurt LU, Clasen MA, Pinto AFM, Moresco JJ, Yates JR 3rd, Aquino P, Barbosa VC, Fischer JSG, Carvalho PC.

J Proteomics. 2019 Jun 30;202:103371. doi: 10.1016/j.jprot.2019.04.021. Epub 2019 Apr 26.


Paip2 cooperates with Cbp80 at an active promoter and participates in RNA Polymerase II phosphorylation in Drosophila.

Kachaev ZM, Lebedeva LA, Shaposhnikov AV, Moresco JJ, Yates JR 3rd, Schedl P, Shidlovskii YV.

FEBS Lett. 2019 May;593(10):1102-1112. doi: 10.1002/1873-3468.13391. Epub 2019 Apr 29.


Perm1 regulates CaMKII activation and shapes skeletal muscle responses to endurance exercise training.

Cho Y, Tachibana S, Hazen BC, Moresco JJ, Yates JR 3rd, Kok B, Saez E, Ross RS, Russell AP, Kralli A.

Mol Metab. 2019 May;23:88-97. doi: 10.1016/j.molmet.2019.02.009. Epub 2019 Feb 27.


The circadian E3 ligase complex SCFFBXL3+CRY targets TLK2.

Correia SP, Chan AB, Vaughan M, Zolboot N, Perea V, Huber AL, Kriebs A, Moresco JJ, Yates JR 3rd, Lamia KA.

Sci Rep. 2019 Jan 17;9(1):198. doi: 10.1038/s41598-018-36618-3.


Mitogenic Signals Stimulate the CREB Coactivator CRTC3 through PP2A Recruitment.

Sonntag T, Ostojić J, Vaughan JM, Moresco JJ, Yoon YS, Yates JR 3rd, Montminy M.

iScience. 2019 Jan 25;11:134-145. doi: 10.1016/j.isci.2018.12.012. Epub 2018 Dec 19.


Proteomic analysis identifies highly expressed plasma membrane proteins for detection and therapeutic targeting of specific breast cancer subtypes.

Ziegler YS, Moresco JJ, Tu PG, Yates JR 3rd, Nardulli AM.

Clin Proteomics. 2018 Sep 19;15:30. doi: 10.1186/s12014-018-9206-0. eCollection 2018.


Proteins that control the geometry of microtubules at the ends of cilia.

Louka P, Vasudevan KK, Guha M, Joachimiak E, Wloga D, Tomasi RF, Baroud CN, Dupuis-Williams P, Galati DF, Pearson CG, Rice LM, Moresco JJ, Yates JR 3rd, Jiang YY, Lechtreck K, Dentler W, Gaertig J.

J Cell Biol. 2018 Dec 3;217(12):4298-4313. doi: 10.1083/jcb.201804141. Epub 2018 Sep 14.


Regulated nuclear accumulation of a histone methyltransferase times the onset of heterochromatin formation in C. elegans embryos.

Mutlu B, Chen HM, Moresco JJ, Orelo BD, Yang B, Gaspar JM, Keppler-Ross S, Yates JR 3rd, Hall DH, Maine EM, Mango SE.

Sci Adv. 2018 Aug 22;4(8):eaat6224. doi: 10.1126/sciadv.aat6224. eCollection 2018 Aug.


CBD-1 organizes two independent complexes required for eggshell vitelline layer formation and egg activation in C. elegans.

González DP, Lamb HV, Partida D, Wilson ZT, Harrison MC, Prieto JA, Moresco JJ, Diedrich JK, Yates JR 3rd, Olson SK.

Dev Biol. 2018 Oct 15;442(2):288-300. doi: 10.1016/j.ydbio.2018.08.005. Epub 2018 Aug 16.


Publisher Correction: ANKRD16 prevents neuron loss caused by an editing-defective tRNA synthetase.

Vo MN, Terrey M, Lee JW, Roy B, Moresco JJ, Sun L, Fu H, Liu Q, Weber TG, Yates JR 3rd, Fredrick K, Schimmel P, Ackerman SL.

Nature. 2018 Aug;560(7720):E35. doi: 10.1038/s41586-018-0271-3.


NRDE-2, the human homolog of fission yeast Nrl1, prevents DNA damage accumulation in human cells.

Richard P, Ogami K, Chen Y, Feng S, Moresco JJ, Yates JR 3rd, Manley JL.

RNA Biol. 2018;15(7):868-876. doi: 10.1080/15476286.2018.1467180. Epub 2018 Aug 2.


Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme.

Nishimura N, Tsuchiya W, Moresco JJ, Hayashi Y, Satoh K, Kaiwa N, Irisa T, Kinoshita T, Schroeder JI, Yates JR 3rd, Hirayama T, Yamazaki T.

Nat Commun. 2018 Jun 6;9(1):2132. doi: 10.1038/s41467-018-04437-9.


SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy.

Xu M, Moresco JJ, Chang M, Mukim A, Smith D, Diedrich JK, Yates JR 3rd, Jones KA.

PLoS Pathog. 2018 May 23;14(5):e1007071. doi: 10.1371/journal.ppat.1007071. eCollection 2018 May.


ANKRD16 prevents neuron loss caused by an editing-defective tRNA synthetase.

Vo MN, Terrey M, Lee JW, Roy B, Moresco JJ, Sun L, Fu H, Liu Q, Weber TG, Yates JR 3rd, Fredrick K, Schimmel P, Ackerman SL.

Nature. 2018 May;557(7706):510-515. doi: 10.1038/s41586-018-0137-8. Epub 2018 May 16. Erratum in: Nature. 2018 Aug;560(7720):E35.


Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution.

Burke JE, Longhurst AD, Merkurjev D, Sales-Lee J, Rao B, Moresco JJ, Yates JR 3rd, Li JJ, Madhani HD.

Cell. 2018 May 3;173(4):1014-1030.e17. doi: 10.1016/j.cell.2018.03.020.


Ist1 regulates ESCRT-III assembly and function during multivesicular endosome biogenesis in Caenorhabditis elegans embryos.

Frankel EB, Shankar R, Moresco JJ, Yates JR 3rd, Volkmann N, Audhya A.

Nat Commun. 2017 Nov 13;8(1):1439. doi: 10.1038/s41467-017-01636-8.


A post-transcriptional program coordinated by CSDE1 prevents intrinsic neural differentiation of human embryonic stem cells.

Ju Lee H, Bartsch D, Xiao C, Guerrero S, Ahuja G, Schindler C, Moresco JJ, Yates JR 3rd, Gebauer F, Bazzi H, Dieterich C, Kurian L, Vilchez D.

Nat Commun. 2017 Nov 13;8(1):1456. doi: 10.1038/s41467-017-01744-5.


Proteomic Analysis of Peripheral Blood Mononuclear Cells after a High-Fat, High-Carbohydrate Meal with Orange Juice.

Chaves DFS, Carvalho PC, Brasili E, Rogero MM, Hassimotto NA, Diedrich JK, Moresco JJ, Yates JR 3rd, Lajolo FM.

J Proteome Res. 2017 Nov 3;16(11):4086-4092. doi: 10.1021/acs.jproteome.7b00476.


TFG facilitates outer coat disassembly on COPII transport carriers to promote tethering and fusion with ER-Golgi intermediate compartments.

Hanna MG 4th, Block S, Frankel EB, Hou F, Johnson A, Yuan L, Knight G, Moresco JJ, Yates JR 3rd, Ashton R, Schekman R, Tong Y, Audhya A.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7707-E7716. doi: 10.1073/pnas.1709120114. Epub 2017 Aug 29. Erratum in: Proc Natl Acad Sci U S A. 2017 Sep 25;:.


Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress.

Jin M, Fuller GG, Han T, Yao Y, Alessi AF, Freeberg MA, Roach NP, Moresco JJ, Karnovsky A, Baba M, Yates JR 3rd, Gitler AD, Inoki K, Klionsky DJ, Kim JK.

Cell Rep. 2017 Jul 25;20(4):895-908. doi: 10.1016/j.celrep.2017.06.082.


An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.

Ogami K, Richard P, Chen Y, Hoque M, Li W, Moresco JJ, Yates JR 3rd, Tian B, Manley JL.

Genes Dev. 2017 Jun 15;31(12):1257-1271. doi: 10.1101/gad.302604.117. Epub 2017 Jul 21.


The GAGA factor regulatory network: Identification of GAGA factor associated proteins.

Lomaev D, Mikhailova A, Erokhin M, Shaposhnikov AV, Moresco JJ, Blokhina T, Wolle D, Aoki T, Ryabykh V, Yates JR 3rd, Shidlovskii YV, Georgiev P, Schedl P, Chetverina D.

PLoS One. 2017 Mar 15;12(3):e0173602. doi: 10.1371/journal.pone.0173602. eCollection 2017.


Analysis of a cAMP regulated coactivator family reveals an alternative phosphorylation motif for AMPK family members.

Sonntag T, Moresco JJ, Vaughan JM, Matsumura S, Yates JR 3rd, Montminy M.

PLoS One. 2017 Feb 24;12(2):e0173013. doi: 10.1371/journal.pone.0173013. eCollection 2017.


A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading.

Shan CM, Wang J, Xu K, Chen H, Yue JX, Andrews S, Moresco JJ, Yates JR, Nagy PL, Tong L, Jia S.

Elife. 2016 Sep 20;5. pii: e17903. doi: 10.7554/eLife.17903.


Integration of Breast Cancer Secretomes with Clinical Data Elucidates Potential Serum Markers for Disease Detection, Diagnosis, and Prognosis.

Ziegler YS, Moresco JJ, Yates JR 3rd, Nardulli AM.

PLoS One. 2016 Jun 29;11(6):e0158296. doi: 10.1371/journal.pone.0158296. eCollection 2016.


Intracellular Action of a Secreted Peptide Required for Fungal Virulence.

Homer CM, Summers DK, Goranov AI, Clarke SC, Wiesner DL, Diedrich JK, Moresco JJ, Toffaletti D, Upadhya R, Caradonna I, Petnic S, Pessino V, Cuomo CA, Lodge JK, Perfect J, Yates JR 3rd, Nielsen K, Craik CS, Madhani HD.

Cell Host Microbe. 2016 Jun 8;19(6):849-64. doi: 10.1016/j.chom.2016.05.001. Epub 2016 May 19.


Ck2-Dependent Phosphorylation Is Required to Maintain Pax7 Protein Levels in Proliferating Muscle Progenitors.

González N, Moresco JJ, Cabezas F, de la Vega E, Bustos F, Yates JR 3rd, Olguín HC.

PLoS One. 2016 May 4;11(5):e0154919. doi: 10.1371/journal.pone.0154919. eCollection 2016.


Correction: Mps1Mph1 Kinase Phosphorylates Mad3 to Inhibit Cdc20Slp1-APC/C and Maintain Spindle Checkpoint Arrests.

Zich J, May K, Paraskevopoulos K, Sen O, Syred HM, van der Sar S, Patel H, Moresco JJ, Sarkeshik A, Yates JR 3rd, Rappsilber J, Hardwick KG.

PLoS Genet. 2016 Apr 21;12(4):e1006009. doi: 10.1371/journal.pgen.1006009. eCollection 2016 Apr. No abstract available.


The proper connection between shelterin components is required for telomeric heterochromatin assembly.

Wang J, Cohen AL, Letian A, Tadeo X, Moresco JJ, Liu J, Yates JR 3rd, Qiao F, Jia S.

Genes Dev. 2016 Apr 1;30(7):827-39. doi: 10.1101/gad.266718.115. Epub 2016 Mar 17.


Mps1Mph1 Kinase Phosphorylates Mad3 to Inhibit Cdc20Slp1-APC/C and Maintain Spindle Checkpoint Arrests.

Zich J, May K, Paraskevopoulos K, Sen O, Syred HM, van der Sar S, Patel H, Moresco JJ, Sarkeshik A, Yates JR 3rd, Rappsilber J, Hardwick KG.

PLoS Genet. 2016 Feb 16;12(2):e1005834. doi: 10.1371/journal.pgen.1005834. eCollection 2016 Feb. Erratum in: PLoS Genet. 2016 Apr;12(4):e1006009.


Casein kinase II promotes target silencing by miRISC through direct phosphorylation of the DEAD-box RNA helicase CGH-1.

Alessi AF, Khivansara V, Han T, Freeberg MA, Moresco JJ, Tu PG, Montoye E, Yates JR 3rd, Karp X, Kim JK.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):E7213-22. doi: 10.1073/pnas.1509499112. Epub 2015 Dec 15. Erratum in: Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):E942.


Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.

Carvalho PC, Lima DB, Leprevost FV, Santos MD, Fischer JS, Aquino PF, Moresco JJ, Yates JR 3rd, Barbosa VC.

Nat Protoc. 2016 Jan;11(1):102-17. doi: 10.1038/nprot.2015.133. Epub 2015 Dec 10.


Ccdc11 is a novel centriolar satellite protein essential for ciliogenesis and establishment of left-right asymmetry.

Silva E, Betleja E, John E, Spear P, Moresco JJ, Zhang S, Yates JR 3rd, Mitchell BJ, Mahjoub MR.

Mol Biol Cell. 2016 Jan 1;27(1):48-63. doi: 10.1091/mbc.E15-07-0474. Epub 2015 Nov 4.


Primate-specific ORF0 contributes to retrotransposon-mediated diversity.

Denli AM, Narvaiza I, Kerman BE, Pena M, Benner C, Marchetto MC, Diedrich JK, Aslanian A, Ma J, Moresco JJ, Moore L, Hunter T, Saghatelian A, Gage FH.

Cell. 2015 Oct 22;163(3):583-93. doi: 10.1016/j.cell.2015.09.025. Epub 2015 Oct 22.


Noncanoncial signal recognition particle RNAs in a major eukaryotic phylum revealed by purification of SRP from the human pathogen Cryptococcus neoformans.

Dumesic PA, Rosenblad MA, Samuelsson T, Nguyen T, Moresco JJ, Yates JR 3rd, Madhani HD.

Nucleic Acids Res. 2015 Oct 15;43(18):9017-27. doi: 10.1093/nar/gkv819. Epub 2015 Aug 14.


DNA damage shifts circadian clock time via Hausp-dependent Cry1 stabilization.

Papp SJ, Huber AL, Jordan SD, Kriebs A, Nguyen M, Moresco JJ, Yates JR, Lamia KA.

Elife. 2015 Mar 10;4. doi: 10.7554/eLife.04883.


A ribonuclease coordinates siRNA amplification and mRNA cleavage during RNAi.

Tsai HY, Chen CC, Conte D Jr, Moresco JJ, Chaves DA, Mitani S, Yates JR 3rd, Tsai MD, Mello CC.

Cell. 2015 Jan 29;160(3):407-19. doi: 10.1016/j.cell.2015.01.010.


Product binding enforces the genomic specificity of a yeast polycomb repressive complex.

Dumesic PA, Homer CM, Moresco JJ, Pack LR, Shanle EK, Coyle SM, Strahl BD, Fujimori DG, Yates JR 3rd, Madhani HD.

Cell. 2015 Jan 15;160(1-2):204-18. doi: 10.1016/j.cell.2014.11.039. Epub 2014 Dec 18.


In vivo activation of a conserved microRNA program induces mammalian heart regeneration.

Aguirre A, Montserrat N, Zacchigna S, Nivet E, Hishida T, Krause MN, Kurian L, Ocampo A, Vazquez-Ferrer E, Rodriguez-Esteban C, Kumar S, Moresco JJ, Yates JR 3rd, Campistol JM, Sancho-Martinez I, Giacca M, Izpisua Belmonte JC.

Cell Stem Cell. 2014 Nov 6;15(5):589-604. doi: 10.1016/j.stem.2014.10.003. Epub 2014 Nov 6. Erratum in: Cell Stem Cell. 2014 Dec 4;15(6):805.


HSF-1-mediated cytoskeletal integrity determines thermotolerance and life span.

Baird NA, Douglas PM, Simic MS, Grant AR, Moresco JJ, Wolff SC, Yates JR 3rd, Manning G, Dillin A.

Science. 2014 Oct 17;346(6207):360-3. doi: 10.1126/science.1253168.


A gene-specific role for the Ssu72 RNAPII CTD phosphatase in HIV-1 Tat transactivation.

Chen Y, Zhang L, Estarás C, Choi SH, Moreno L Jr, Karn J, Moresco JJ, Yates JR 3rd, Jones KA.

Genes Dev. 2014 Oct 15;28(20):2261-75. doi: 10.1101/gad.250449.114.


CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3' processing.

Chan SL, Huppertz I, Yao C, Weng L, Moresco JJ, Yates JR 3rd, Ule J, Manley JL, Shi Y.

Genes Dev. 2014 Nov 1;28(21):2370-80. doi: 10.1101/gad.250993.114. Epub 2014 Oct 9.


Tls1 regulates splicing of shelterin components to control telomeric heterochromatin assembly and telomere length.

Wang J, Tadeo X, Hou H, Andrews S, Moresco JJ, Yates JR 3rd, Nagy PL, Jia S.

Nucleic Acids Res. 2014 Oct;42(18):11419-32. doi: 10.1093/nar/gku842. Epub 2014 Sep 22.


Off-Line Multidimensional Liquid Chromatography and Auto Sampling Result in Sample Loss in LC/LC-MS/MS.

Magdeldin S, Moresco JJ, Yamamoto T, Yates JR 3rd.

J Proteome Res. 2014 Aug 1;13(8):3826-36. doi: 10.1021/pr500530e. Epub 2014 Jul 21.


Plasma membrane proteomics of human breast cancer cell lines identifies potential targets for breast cancer diagnosis and treatment.

Ziegler YS, Moresco JJ, Tu PG, Yates JR 3rd, Nardulli AM.

PLoS One. 2014 Jul 16;9(7):e102341. doi: 10.1371/journal.pone.0102341. eCollection 2014.


Mass spectrometry-based shotgun proteomic analysis of C. elegans protein complexes.

Fonslow BR, Moresco JJ, Tu PG, Aalto AP, Pasquinelli AE, Dillin AG, Yates JR 3rd.

WormBook. 2014 Jun 24:1-18. doi: 10.1895/wormbook.1.171.1. Review.


A single vertebrate DNA virus protein disarms invertebrate immunity to RNA virus infection.

Gammon DB, Duraffour S, Rozelle DK, Hehnly H, Sharma R, Sparks ME, West CC, Chen Y, Moresco JJ, Andrei G, Connor JH, Conte D Jr, Gundersen-Rindal DE, Marshall WL, Yates JR, Silverman N, Mello CC.

Elife. 2014 Jun 25;3. doi: 10.7554/eLife.02910.


The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast.

Kallgren SP, Andrews S, Tadeo X, Hou H, Moresco JJ, Tu PG, Yates JR 3rd, Nagy PL, Jia S.

PLoS Genet. 2014 May 29;10(5):e1004334. doi: 10.1371/journal.pgen.1004334. eCollection 2014.

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