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Items: 46

1.

Engineering DNA recognition and allosteric response properties of TetR family proteins by using a module-swapping strategy.

Dimas RP, Jordan BR, Jiang XL, Martini C, Glavy JS, Patterson DP, Morcos F, Chan CTY.

Nucleic Acids Res. 2019 Aug 8. pii: gkz666. doi: 10.1093/nar/gkz666. [Epub ahead of print]

PMID:
31392336
2.

Engineering repressors with coevolutionary cues facilitates toggle switches with a master reset.

Dimas RP, Jiang XL, Alberto de la Paz J, Morcos F, Chan CTY.

Nucleic Acids Res. 2019 Jun 4;47(10):5449-5463. doi: 10.1093/nar/gkz280.

3.

The role of coevolutionary signatures in protein interaction dynamics, complex inference, molecular recognition, and mutational landscapes.

Morcos F, Onuchic JN.

Curr Opin Struct Biol. 2019 Jun;56:179-186. doi: 10.1016/j.sbi.2019.03.024. Epub 2019 Apr 28. Review.

PMID:
31029927
4.

DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Couplings.

Jarmolinska AI, Zhou Q, Sulkowska JI, Morcos F.

J Chem Inf Model. 2019 Feb 25;59(2):625-629. doi: 10.1021/acs.jcim.8b00690. Epub 2019 Jan 28.

PMID:
30632747
5.

Coevolutionary Signals and Structure-Based Models for the Prediction of Protein Native Conformations.

Dos Santos RN, Jiang X, Martínez L, Morcos F.

Methods Mol Biol. 2019;1851:83-103. doi: 10.1007/978-1-4939-8736-8_5.

PMID:
30298393
6.

Designing bacterial signaling interactions with coevolutionary landscapes.

Cheng RR, Haglund E, Tiee NS, Morcos F, Levine H, Adams JA, Jennings PA, Onuchic JN.

PLoS One. 2018 Aug 20;13(8):e0201734. doi: 10.1371/journal.pone.0201734. eCollection 2018.

7.

Global pairwise RNA interaction landscapes reveal core features of protein recognition.

Zhou Q, Kunder N, De la Paz JA, Lasley AE, Bhat VD, Morcos F, Campbell ZT.

Nat Commun. 2018 Jun 28;9(1):2511. doi: 10.1038/s41467-018-04729-0.

8.

Characterization of C-ring component assembly in flagellar motors from amino acid coevolution.

Dos Santos RN, Khan S, Morcos F.

R Soc Open Sci. 2018 May 9;5(5):171854. doi: 10.1098/rsos.171854. eCollection 2018 May.

9.

Genotypic and Phenotypic Factors Influencing Drug Response in Mexican Patients With Type 2 Diabetes Mellitus.

Sanchez-Ibarra HE, Reyes-Cortes LM, Jiang XL, Luna-Aguirre CM, Aguirre-Trevino D, Morales-Alvarado IA, Leon-Cachon RB, Lavalle-Gonzalez F, Morcos F, Barrera-Saldaña HA.

Front Pharmacol. 2018 Apr 6;9:320. doi: 10.3389/fphar.2018.00320. eCollection 2018.

10.

Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals.

Dos Santos RN, Ferrari AJR, de Jesus HCR, Gozzo FC, Morcos F, Martínez L.

Bioinformatics. 2018 Jul 1;34(13):2201-2208. doi: 10.1093/bioinformatics/bty074.

PMID:
29447388
11.

Revealing protein networks and gene-drug connectivity in cancer from direct information.

Jiang XL, Martinez-Ledesma E, Morcos F.

Sci Rep. 2017 Jun 16;7(1):3739. doi: 10.1038/s41598-017-04001-3.

12.

Interactions between mitoNEET and NAF-1 in cells.

Karmi O, Holt SH, Song L, Tamir S, Luo Y, Bai F, Adenwalla A, Darash-Yahana M, Sohn YS, Jennings PA, Azad RK, Onuchic JN, Morcos F, Nechushtai R, Mittler R.

PLoS One. 2017 Apr 20;12(4):e0175796. doi: 10.1371/journal.pone.0175796. eCollection 2017.

13.

Elucidating the druggable interface of protein-protein interactions using fragment docking and coevolutionary analysis.

Bai F, Morcos F, Cheng RR, Jiang H, Onuchic JN.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):E8051-E8058. Epub 2016 Nov 29.

14.

Connecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes.

Cheng RR, Nordesjö O, Hayes RL, Levine H, Flores SC, Onuchic JN, Morcos F.

Mol Biol Evol. 2016 Dec;33(12):3054-3064. Epub 2016 Sep 7.

15.

A Combined Computational and Genetic Approach Uncovers Network Interactions of the Cyanobacterial Circadian Clock.

Boyd JS, Cheng RR, Paddock ML, Sancar C, Morcos F, Golden SS.

J Bacteriol. 2016 Aug 25;198(18):2439-47. doi: 10.1128/JB.00235-16. Print 2016 Sep 15.

16.

The Gearbox of the Bacterial Flagellar Motor Switch.

Pandini A, Morcos F, Khan S.

Structure. 2016 Jul 6;24(7):1209-20. doi: 10.1016/j.str.2016.05.012. Epub 2016 Jun 23.

17.

Sequence co-evolutionary information is a natural partner to minimally-frustrated models of biomolecular dynamics.

Noel JK, Morcos F, Onuchic JN.

F1000Res. 2016 Jan 26;5. pii: F1000 Faculty Rev-106. doi: 10.12688/f1000research.7186.1. eCollection 2016. Review.

18.

Dimeric interactions and complex formation using direct coevolutionary couplings.

dos Santos RN, Morcos F, Jana B, Andricopulo AD, Onuchic JN.

Sci Rep. 2015 Sep 4;5:13652. doi: 10.1038/srep13652.

19.

The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer.

Bai F, Morcos F, Sohn YS, Darash-Yahana M, Rezende CO, Lipper CH, Paddock ML, Song L, Luo Y, Holt SH, Tamir S, Theodorakis EA, Jennings PA, Onuchic JN, Mittler R, Nechushtai R.

Proc Natl Acad Sci U S A. 2015 Mar 24;112(12):3698-703. doi: 10.1073/pnas.1502960112. Epub 2015 Mar 11.

20.

Structure-function analysis of NEET proteins uncovers their role as key regulators of iron and ROS homeostasis in health and disease.

Tamir S, Paddock ML, Darash-Yahana-Baram M, Holt SH, Sohn YS, Agranat L, Michaeli D, Stofleth JT, Lipper CH, Morcos F, Cabantchik IZ, Onuchic JN, Jennings PA, Mittler R, Nechushtai R.

Biochim Biophys Acta. 2015 Jun;1853(6):1294-315. doi: 10.1016/j.bbamcr.2014.10.014. Epub 2014 Oct 23. Review.

21.

Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection.

Morcos F, Schafer NP, Cheng RR, Onuchic JN, Wolynes PG.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12408-13. doi: 10.1073/pnas.1413575111. Epub 2014 Aug 11.

22.

Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1.

Tamir S, Rotem-Bamberger S, Katz C, Morcos F, Hailey KL, Zuris JA, Wang C, Conlan AR, Lipper CH, Paddock ML, Mittler R, Onuchic JN, Jennings PA, Friedler A, Nechushtai R.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5177-82. doi: 10.1073/pnas.1403770111. Epub 2014 Mar 25.

23.

From structure to function: the convergence of structure based models and co-evolutionary information.

Jana B, Morcos F, Onuchic JN.

Phys Chem Chem Phys. 2014 Apr 14;16(14):6496-507. doi: 10.1039/c3cp55275f. Epub 2014 Mar 7.

PMID:
24603809
24.

Direct coupling analysis for protein contact prediction.

Morcos F, Hwa T, Onuchic JN, Weigt M.

Methods Mol Biol. 2014;1137:55-70. doi: 10.1007/978-1-4939-0366-5_5.

PMID:
24573474
25.

Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information.

Cheng RR, Morcos F, Levine H, Onuchic JN.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):E563-71. doi: 10.1073/pnas.1323734111. Epub 2014 Jan 21.

26.

Designing pooling systems for noisy high-throughput protein-protein interaction experiments using boolean compressed sensing.

Mourad R, Dawy Z, Morcos F.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1478-90. doi: 10.1109/TCBB.2013.129.

PMID:
24407306
27.

Coevolutionary signals across protein lineages help capture multiple protein conformations.

Morcos F, Jana B, Hwa T, Onuchic JN.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20533-8. doi: 10.1073/pnas.1315625110. Epub 2013 Dec 2.

28.

Acute neurorehabilitation versus treatment as usual.

Thompson JN, Majumdar J, Sheldrick R, Morcos F.

Br J Neurosurg. 2013 Feb;27(1):24-9. doi: 10.3109/02688697.2012.714818. Epub 2012 Aug 31.

PMID:
22938594
29.

Genomics-aided structure prediction.

Sułkowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):10340-5. doi: 10.1073/pnas.1207864109. Epub 2012 Jun 12.

30.

Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M.

Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):E1293-301. doi: 10.1073/pnas.1111471108. Epub 2011 Nov 21.

31.

Study of elastic collisions of Myxococcus xanthus in swarms.

Harvey CW, Morcos F, Sweet CR, Kaiser D, Chatterjee S, Liu X, Chen DZ, Alber M.

Phys Biol. 2011 Apr;8(2):026016. doi: 10.1088/1478-3975/8/2/026016. Epub 2011 Apr 6.

PMID:
21471636
32.

Modeling conformational ensembles of slow functional motions in Pin1-WW.

Morcos F, Chatterjee S, McClendon CL, Brenner PR, López-Rendón R, Zintsmaster J, Ercsey-Ravasz M, Sweet CR, Jacobson MP, Peng JW, Izaguirre JA.

PLoS Comput Biol. 2010 Dec 2;6(12):e1001015. doi: 10.1371/journal.pcbi.1001015.

33.

Estimation of protein and domain interactions in the switching motility system of Myxococcus xanthus.

Morcos F, Sikora M, Alber M, Kaiser D, Izaguirre JA.

Pac Symp Biocomput. 2010:157-65.

34.

Translation initiation modeling and mutational analysis based on the 3(')-end of the Escherichia coli 16S rRNA sequence.

Dawy Z, Morcos F, Weindl J, Mueller JC.

Biosystems. 2009 Apr;96(1):58-64. doi: 10.1016/j.biosystems.2008.11.008. Epub 2008 Nov 25.

PMID:
19070645
35.

Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference.

Morcos F, Lamanna C, Sikora M, Izaguirre J.

Bioinformatics. 2008 Oct 1;24(19):2265-6. doi: 10.1093/bioinformatics/btn380. Epub 2008 Jul 24.

PMID:
18653520
36.

HingeMaster: normal mode hinge prediction approach and integration of complementary predictors.

Flores SC, Keating KS, Painter J, Morcos F, Nguyen K, Merritt EA, Kuhn LA, Gerstein MB.

Proteins. 2008 Nov 1;73(2):299-319. doi: 10.1002/prot.22060.

PMID:
18433058
37.

Predicting protein-protein interactions from protein domains using a set cover approach.

Huang C, Morcos F, Kanaan SP, Wuchty S, Chen DZ, Izaguirre JA.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):78-87.

PMID:
17277415
38.

The newest team member?

Morcos F.

J Obstet Gynaecol Can. 2004 Apr;26(4):327. No abstract available.

PMID:
15190863
39.

Sciatica or spinal lymphoma.

Morcos F, Smith E.

Ann Rheum Dis. 2002 Jan;61(1):94. No abstract available.

40.
41.

Adrenocortical function studies during the normal menstrual cycle and in women receiving norethindrone with and without mestranol.

Beck RP, Morcos F, Fawcett D, Watanabe M.

Am J Obstet Gynecol. 1972 Feb 1;112(3):364-8.

PMID:
5060381
42.

The effect of norethindrone with and without estrogen on serum immunoreactive luteinizing hormone secretion.

Morcos F, Crockford PM, Beck RP.

Am J Obstet Gynecol. 1972 Feb 1;112(3):358-63. No abstract available.

PMID:
5060380
43.

Thyroid function studies in different phases of the menstrual cycle and in women receiving norethindrone with and without estrogen.

Beck RP, Fawcett DM, Morcos F.

Am J Obstet Gynecol. 1972 Feb 1;112(3):369-73. No abstract available.

PMID:
4110544
44.

Pentaquine in the treatment of malaria.

ELDIN GN, MORCOS F.

J Egypt Med Assoc. 1952;35(5):330-4. No abstract available.

PMID:
14946815
45.

Field trials with new antimalarial drugs in Egypt.

HALAWANI A, BAZ I, MORCOS F.

Ann Trop Med Parasitol. 1948 Dec;42(3-4):304-11. No abstract available.

PMID:
18110346
46.

The antimalarial chloroquine-diphosphate (aralen).

HALAWANI A, BAZ II, MORCOS F.

J Egypt Med Assoc. 1947 Mar;30(3):128-36. No abstract available.

PMID:
20253961

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