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Items: 1 to 50 of 179

1.

Coastal Ocean Metagenomes and Curated Metagenome-Assembled Genomes from Marsh Landing, Sapelo Island (Georgia, USA).

Damashek J, Edwardson CF, Tolar BB, Gifford SM, Moran MA, Hollibaugh JT.

Microbiol Resour Announc. 2019 Oct 3;8(40). pii: e00934-19. doi: 10.1128/MRA.00934-19.

2.

Sulfur metabolites in the pelagic ocean.

Moran MA, Durham BP.

Nat Rev Microbiol. 2019 Nov;17(11):665-678. doi: 10.1038/s41579-019-0250-1. Epub 2019 Sep 4. Review.

PMID:
31485034
3.

Towards Integrating Evolution, Metabolism, and Climate Change Studies of Marine Ecosystems.

Baltar F, Bayer B, Bednarsek N, Deppeler S, Escribano R, Gonzalez CE, Hansman RL, Mishra RK, Moran MA, Repeta DJ, Robinson C, Sintes E, Tamburini C, Valentin LE, Herndl GJ.

Trends Ecol Evol. 2019 Jul 24. pii: S0169-5347(19)30193-4. doi: 10.1016/j.tree.2019.07.003. [Epub ahead of print] Review.

4.

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.

Nowinski B, Smith CB, Thomas CM, Esson K, Marin R 3rd, Preston CM, Birch JM, Scholin CA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Whitman WB, Kiene RP, Eloe-Fadrosh EA, Moran MA.

Sci Data. 2019 Jul 22;6(1):129. doi: 10.1038/s41597-019-0132-4.

5.

Sulfur metabolites that facilitate oceanic phytoplankton-bacteria carbon flux.

Landa M, Burns AS, Durham BP, Esson K, Nowinski B, Sharma S, Vorobev A, Nielsen T, Kiene RP, Moran MA.

ISME J. 2019 Oct;13(10):2536-2550. doi: 10.1038/s41396-019-0455-3. Epub 2019 Jun 21.

PMID:
31227817
6.

Scientists' warning to humanity: microorganisms and climate change.

Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, Jansson JK, Karl DM, Koskella B, Mark Welch DB, Martiny JBH, Moran MA, Orphan VJ, Reay DS, Remais JV, Rich VI, Singh BK, Stein LY, Stewart FJ, Sullivan MB, van Oppen MJH, Weaver SC, Webb EA, Webster NS.

Nat Rev Microbiol. 2019 Sep;17(9):569-586. doi: 10.1038/s41579-019-0222-5. Epub 2019 Jun 18. Review.

PMID:
31213707
7.

Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes.

Nowinski B, Motard-Côté J, Landa M, Preston CM, Scholin CA, Birch JM, Kiene RP, Moran MA.

Environ Microbiol. 2019 May;21(5):1687-1701. doi: 10.1111/1462-2920.14560. Epub 2019 Mar 12.

PMID:
30761723
8.

Transient O2 pulses direct Fe crystallinity and Fe(III)-reducer gene expression within a soil microbiome.

Wilmoth JL, Moran MA, Thompson A.

Microbiome. 2018 Oct 23;6(1):189. doi: 10.1186/s40168-018-0574-5.

9.

Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals.

Vorobev A, Sharma S, Yu M, Lee J, Washington BJ, Whitman WB, Ballantyne F 4th, Medeiros PM, Moran MA.

Environ Microbiol. 2018 Aug;20(8):3012-3030. doi: 10.1111/1462-2920.14344. Epub 2018 Jul 30.

PMID:
29968336
10.

Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community.

Gómez-Consarnau L, Sachdeva R, Gifford SM, Cutter LS, Fuhrman JA, Sañudo-Wilhelmy SA, Moran MA.

Environ Microbiol. 2018 Aug;20(8):2809-2823. doi: 10.1111/1462-2920.14133. Epub 2018 May 11.

PMID:
29659156
11.

Ocean biogeochemistry modeled with emergent trait-based genomics.

Coles VJ, Stukel MR, Brooks MT, Burd A, Crump BC, Moran MA, Paul JH, Satinsky BM, Yager PL, Zielinski BL, Hood RR.

Science. 2017 Dec 1;358(6367):1149-1154. doi: 10.1126/science.aan5712.

PMID:
29191900
12.

Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom.

Landa M, Burns AS, Roth SJ, Moran MA.

ISME J. 2017 Dec;11(12):2677-2690. doi: 10.1038/ismej.2017.117. Epub 2017 Jul 21.

13.

Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system.

Durham BP, Dearth SP, Sharma S, Amin SA, Smith CB, Campagna SR, Armbrust EV, Moran MA.

Environ Microbiol. 2017 Sep;19(9):3500-3513. doi: 10.1111/1462-2920.13834. Epub 2017 Jul 21.

PMID:
28631440
14.

Bacterial Biogeography across the Amazon River-Ocean Continuum.

Doherty M, Yager PL, Moran MA, Coles VJ, Fortunato CS, Krusche AV, Medeiros PM, Payet JP, Richey JE, Satinsky BM, Sawakuchi HO, Ward ND, Crump BC.

Front Microbiol. 2017 May 23;8:882. doi: 10.3389/fmicb.2017.00882. eCollection 2017.

15.

Expression patterns of elemental cycling genes in the Amazon River Plume.

Satinsky BM, Smith CB, Sharma S, Landa M, Medeiros PM, Coles VJ, Yager PL, Crump BC, Moran MA.

ISME J. 2017 Aug;11(8):1852-1864. doi: 10.1038/ismej.2017.46. Epub 2017 Apr 7.

16.

Spontaneous mutations of a model heterotrophic marine bacterium.

Sun Y, Powell KE, Sung W, Lynch M, Moran MA, Luo H.

ISME J. 2017 Jul;11(7):1713-1718. doi: 10.1038/ismej.2017.20. Epub 2017 Mar 21.

17.

Small RNAs expressed during dimethylsulfoniopropionate degradation by a model marine bacterium.

Burns AS, Bullock HA, Smith C, Huang Q, Whitman WB, Moran MA.

Environ Microbiol Rep. 2016 Oct;8(5):763-773. doi: 10.1111/1758-2229.12437. Epub 2016 Jul 12.

PMID:
27337503
18.

Low genome content diversity of marine planktonic Thaumarchaeota.

Luo H, Sun Y, Hollibaugh JT, Moran MA.

Environ Microbiol Rep. 2016 Aug;8(4):501-7. doi: 10.1111/1758-2229.12417. Epub 2016 Jun 27.

PMID:
27120311
19.

Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3.

Rivers AR, Burns AS, Chan LK, Moran MA.

Front Microbiol. 2016 Mar 29;7:380. doi: 10.3389/fmicb.2016.00380. eCollection 2016.

20.

Deciphering ocean carbon in a changing world.

Moran MA, Kujawinski EB, Stubbins A, Fatland R, Aluwihare LI, Buchan A, Crump BC, Dorrestein PC, Dyhrman ST, Hess NJ, Howe B, Longnecker K, Medeiros PM, Niggemann J, Obernosterer I, Repeta DJ, Waldbauer JR.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3143-51. doi: 10.1073/pnas.1514645113. Epub 2016 Mar 7.

21.

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.

Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, Shade A, Newton RJ, McMahon KD, Malmstrom RR.

ISME J. 2016 Jul;10(7):1589-601. doi: 10.1038/ismej.2015.241. Epub 2016 Jan 8.

22.

The global ocean microbiome.

Moran MA.

Science. 2015 Dec 11;350(6266):aac8455. doi: 10.1126/science.aac8455. Review.

PMID:
26659059
23.

Erratum to: An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.

Rivers AR, Smith CB, Moran MA.

Stand Genomic Sci. 2015 Nov 26;10:112. doi: 10.1186/s40793-015-0107-9. eCollection 2015.

24.

Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011.

Satinsky BM, Fortunato CS, Doherty M, Smith CB, Sharma S, Ward ND, Krusche AV, Yager PL, Richey JE, Moran MA, Crump BC.

Microbiome. 2015 Sep 10;3:39. doi: 10.1186/s40168-015-0099-0.

25.

Microbial life in Bourlyashchy, the hottest thermal pool of Uzon Caldera, Kamchatka.

Chernyh NA, Mardanov AV, Gumerov VM, Miroshnichenko ML, Lebedinsky AV, Merkel AY, Crowe D, Pimenov NV, Rusanov II, Ravin NV, Moran MA, Bonch-Osmolovskaya EA.

Extremophiles. 2015 Nov;19(6):1157-71. doi: 10.1007/s00792-015-0787-5. Epub 2015 Sep 8.

PMID:
26349929
26.

How do divergent ecological strategies emerge among marine bacterioplankton lineages?

Luo H, Moran MA.

Trends Microbiol. 2015 Sep;23(9):577-84. doi: 10.1016/j.tim.2015.05.004. Epub 2015 Jun 4. Review.

PMID:
26051014
27.

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.

Amin SA, Hmelo LR, van Tol HM, Durham BP, Carlson LT, Heal KR, Morales RL, Berthiaume CT, Parker MS, Djunaedi B, Ingalls AE, Parsek MR, Moran MA, Armbrust EV.

Nature. 2015 Jun 4;522(7554):98-101. doi: 10.1038/nature14488. Epub 2015 May 27.

PMID:
26017307
28.

Single-taxon field measurements of bacterial gene regulation controlling DMSP fate.

Varaljay VA, Robidart J, Preston CM, Gifford SM, Durham BP, Burns AS, Ryan JP, Marin R 3rd, Kiene RP, Zehr JP, Scholin CA, Moran MA.

ISME J. 2015 Jul;9(7):1677-86. doi: 10.1038/ismej.2015.23. Epub 2015 Feb 20. Erratum in: ISME J. 2015 Jul;9(7):1692.

29.

Cryptic carbon and sulfur cycling between surface ocean plankton.

Durham BP, Sharma S, Luo H, Smith CB, Amin SA, Bender SJ, Dearth SP, Van Mooy BA, Campagna SR, Kujawinski EB, Armbrust EV, Moran MA.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):453-7. doi: 10.1073/pnas.1413137112. Epub 2014 Dec 29.

30.

Evolutionary ecology of the marine Roseobacter clade.

Luo H, Moran MA.

Microbiol Mol Biol Rev. 2014 Dec;78(4):573-87. doi: 10.1128/MMBR.00020-14. Review.

31.

Phenotypic plasticity in heterotrophic marine microbial communities in continuous cultures.

Beier S, Rivers AR, Moran MA, Obernosterer I.

ISME J. 2015 May;9(5):1141-51. doi: 10.1038/ismej.2014.206. Epub 2014 Nov 14.

32.

Microspatial gene expression patterns in the Amazon River Plume.

Satinsky BM, Crump BC, Smith CB, Sharma S, Zielinski BL, Doherty M, Meng J, Sun S, Medeiros PM, Paul JH, Coles VJ, Yager PL, Moran MA.

Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):11085-90. doi: 10.1073/pnas.1402782111. Epub 2014 Jul 14.

33.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

34.

The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010.

Satinsky BM, Zielinski BL, Doherty M, Smith CB, Sharma S, Paul JH, Crump BC, Moran MA.

Microbiome. 2014 May 15;2:17. doi: 10.1186/2049-2618-2-17. eCollection 2014.

35.

Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community.

Gifford SM, Sharma S, Moran MA.

Front Microbiol. 2014 Apr 24;5:185. doi: 10.3389/fmicb.2014.00185. eCollection 2014.

36.

Glucocorticoids and irreversible damage in patients with systemic lupus erythematosus.

Ruiz-Arruza I, Ugarte A, Cabezas-Rodriguez I, Medina JA, Moran MA, Ruiz-Irastorza G.

Rheumatology (Oxford). 2014 Aug;53(8):1470-6. doi: 10.1093/rheumatology/keu148. Epub 2014 Mar 27.

PMID:
24681836
37.

The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater.

Beier S, Rivers AR, Moran MA, Obernosterer I.

Environ Microbiol. 2015 Oct;17(10):3466-80. doi: 10.1111/1462-2920.12434. Epub 2014 May 21.

PMID:
24612402
38.

Comparing effective population sizes of dominant marine alphaproteobacteria lineages.

Luo H, Swan BK, Stepanauskas R, Hughes AL, Moran MA.

Environ Microbiol Rep. 2014 Apr;6(2):167-72. doi: 10.1111/1758-2229.12129. Epub 2013 Dec 5.

PMID:
24596290
39.

Quantitative microbial metatranscriptomics.

Gifford S, Satinsky B, Moran MA.

Methods Mol Biol. 2014;1096:213-29. doi: 10.1007/978-1-62703-712-9_17.

PMID:
24515372
40.

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, Stepanauskas R.

Stand Genomic Sci. 2013 Jul 30;8(3):561-70. doi: 10.4056/sigs.4638348. eCollection 2013 Jul 30.

41.

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters.

Luo H, Swan BK, Stepanauskas R, Hughes AL, Moran MA.

ISME J. 2014 Jul;8(7):1428-39. doi: 10.1038/ismej.2013.248. Epub 2014 Jan 23.

42.

Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria.

Bullock HA, Reisch CR, Burns AS, Moran MA, Whitman WB.

J Bacteriol. 2014 Mar;196(6):1275-85. doi: 10.1128/JB.00026-14. Epub 2014 Jan 17.

43.

An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.

Rivers AR, Smith CB, Moran MA.

Stand Genomic Sci. 2014 Dec 8;9:11. doi: 10.1186/1944-3277-9-11. eCollection 2014. Erratum in: Stand Genomic Sci. 2015;10:112.

44.

Seasonal variation in the metatranscriptomes of a Thaumarchaeota population from SE USA coastal waters.

Hollibaugh JT, Gifford SM, Moran MA, Ross MJ, Sharma S, Tolar BB.

ISME J. 2014 Mar;8(3):685-98. doi: 10.1038/ismej.2013.171. Epub 2013 Oct 17.

45.

Assembly-free metagenomic analysis reveals new metabolic capabilities in surface ocean bacterioplankton.

Luo H, Moran MA.

Environ Microbiol Rep. 2013 Oct;5(5):686-96. doi: 10.1111/1758-2229.12068. Epub 2013 May 16.

PMID:
24115619
46.

Use of internal standards for quantitative metatranscriptome and metagenome analysis.

Satinsky BM, Gifford SM, Crump BC, Moran MA.

Methods Enzymol. 2013;531:237-50. doi: 10.1016/B978-0-12-407863-5.00012-5.

PMID:
24060124
47.

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill.

Rivers AR, Sharma S, Tringe SG, Martin J, Joye SB, Moran MA.

ISME J. 2013 Dec;7(12):2315-29. doi: 10.1038/ismej.2013.129. Epub 2013 Aug 1.

48.

Revascularization of Arterialized Venous Flaps through a Total Retrograde Reverse Blood Flow: Randomized Experimental Trial of Viability.

Iglesias M, Fonseca-Lazcano JA, Moran MA, Butron P, Díaz-Morales M.

Plast Reconstr Surg Glob Open. 2013 Sep 10;1(5):e34. doi: 10.1097/GOX.0b013e3182a4bc9d. eCollection 2013 Aug.

49.

Evolution of divergent life history strategies in marine alphaproteobacteria.

Luo H, Csuros M, Hughes AL, Moran MA.

MBio. 2013 Jul 9;4(4). pii: e00373-13. doi: 10.1128/mBio.00373-13.

50.

Metabolism of dimethylsulphoniopropionate by Ruegeria pomeroyi DSS-3.

Reisch CR, Crabb WM, Gifford SM, Teng Q, Stoudemayer MJ, Moran MA, Whitman WB.

Mol Microbiol. 2013 Aug;89(4):774-91. doi: 10.1111/mmi.12314. Epub 2013 Jul 19.

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