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Items: 41

1.

Data-independent Acquisition for the Orbitrap Q Exactive HF. A tutorial.

Reubsaet L, Sweredoski MJ, Moradian A.

J Proteome Res. 2018 Dec 17. doi: 10.1021/acs.jproteome.8b00845. [Epub ahead of print]

PMID:
30557026
2.

Nitric Oxide Modulates Endonuclease III Redox Activity by a 800 mV Negative Shift upon [Fe4S4] Cluster Nitrosylation.

Ekanger LA, Oyala PH, Moradian A, Sweredoski MJ, Barton JK.

J Am Chem Soc. 2018 Sep 19;140(37):11800-11810. doi: 10.1021/jacs.8b07362. Epub 2018 Sep 6.

3.

FXR1 Is an IL-19-Responsive RNA-Binding Protein that Destabilizes Pro-inflammatory Transcripts in Vascular Smooth Muscle Cells.

Herman AB, Vrakas CN, Ray M, Kelemen SE, Sweredoski MJ, Moradian A, Haines DS, Autieri MV.

Cell Rep. 2018 Jul 31;24(5):1176-1189. doi: 10.1016/j.celrep.2018.07.002.

4.

Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria.

Belliveau NM, Barnes SL, Ireland WT, Jones DL, Sweredoski MJ, Moradian A, Hess S, Kinney JB, Phillips R.

Proc Natl Acad Sci U S A. 2018 May 22;115(21):E4796-E4805. doi: 10.1073/pnas.1722055115. Epub 2018 May 4.

5.

Two distinct sites of client protein interaction with the chaperone cpSRP43.

McAvoy CZ, Siegel A, Piszkiewicz S, Miaou E, Yu M, Nguyen T, Moradian A, Sweredoski MJ, Hess S, Shan SO.

J Biol Chem. 2018 Jun 8;293(23):8861-8873. doi: 10.1074/jbc.RA118.002215. Epub 2018 Apr 18.

PMID:
29669809
6.

Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods.

Pasulka AL, Thamatrakoln K, Kopf SH, Guan Y, Poulos B, Moradian A, Sweredoski MJ, Hess S, Sullivan MB, Bidle KD, Orphan VJ.

Environ Microbiol. 2018 Feb;20(2):671-692. doi: 10.1111/1462-2920.13996. Epub 2017 Dec 14.

PMID:
29159966
7.

Composition and Regulation of the Cellular Repertoire of SCF Ubiquitin Ligases.

Reitsma JM, Liu X, Reichermeier KM, Moradian A, Sweredoski MJ, Hess S, Deshaies RJ.

Cell. 2017 Nov 30;171(6):1326-1339.e14. doi: 10.1016/j.cell.2017.10.016. Epub 2017 Nov 2.

8.

Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in Pseudomonas aeruginosa Biofilms.

Babin BM, Atangcho L, van Eldijk MB, Sweredoski MJ, Moradian A, Hess S, Tolker-Nielsen T, Newman DK, Tirrell DA.

MBio. 2017 Oct 24;8(5). pii: e01593-17. doi: 10.1128/mBio.01593-17.

10.

Hsp83 loss suppresses proteasomal activity resulting in an upregulation of caspase-dependent compensatory autophagy.

Choutka C, DeVorkin L, Go NE, Hou YC, Moradian A, Morin GB, Gorski SM.

Autophagy. 2017 Sep 2;13(9):1573-1589. doi: 10.1080/15548627.2017.1339004. Epub 2017 Aug 14.

11.

Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) Enables Time-Resolved Analysis of Protein Synthesis in Native Plant Tissue.

Glenn WS, Stone SE, Ho SH, Sweredoski MJ, Moradian A, Hess S, Bailey-Serres J, Tirrell DA.

Plant Physiol. 2017 Mar;173(3):1543-1553. doi: 10.1104/pp.16.01762. Epub 2017 Jan 19.

12.

Identification of Mechanism-Based Inactivation in P450-Catalyzed Cyclopropanation Facilitates Engineering of Improved Enzymes.

Renata H, Lewis RD, Sweredoski MJ, Moradian A, Hess S, Wang ZJ, Arnold FH.

J Am Chem Soc. 2016 Sep 28;138(38):12527-33. doi: 10.1021/jacs.6b06823. Epub 2016 Sep 14.

13.

Quantitative mass spectrometry reveals changes in SNAP-25 isoforms in schizophrenia.

Barakauskas VE, Moradian A, Barr AM, Beasley CL, Rosoklija G, Mann JJ, Ilievski B, Stankov A, Dwork AJ, Falkai P, Morin GB, Honer WG.

Schizophr Res. 2016 Nov;177(1-3):44-51. doi: 10.1016/j.schres.2016.03.002. Epub 2016 Mar 9.

14.

SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa.

Babin BM, Bergkessel M, Sweredoski MJ, Moradian A, Hess S, Newman DK, Tirrell DA.

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):E597-605. doi: 10.1073/pnas.1514412113. Epub 2016 Jan 19.

15.

A Targeted MRM Approach for Tempo-Spatial Proteomics Analyses.

Moradian A, Porras-Yakushi TR, Sweredoski MJ, Hess S.

Methods Mol Biol. 2016;1394:75-85. doi: 10.1007/978-1-4939-3341-9_6.

PMID:
26700042
16.

A Trichomonas vaginalis Rhomboid Protease and Its Substrate Modulate Parasite Attachment and Cytolysis of Host Cells.

Riestra AM, Gandhi S, Sweredoski MJ, Moradian A, Hess S, Urban S, Johnson PJ.

PLoS Pathog. 2015 Dec 18;11(12):e1005294. doi: 10.1371/journal.ppat.1005294. eCollection 2015 Dec.

17.

JNK-associated Leucine Zipper Protein Functions as a Docking Platform for Polo-like Kinase 1 and Regulation of the Associating Transcription Factor Forkhead Box Protein K1.

Ramkumar P, Lee CM, Moradian A, Sweredoski MJ, Hess S, Sharrocks AD, Haines DS, Reddy EP.

J Biol Chem. 2015 Dec 4;290(49):29617-28. doi: 10.1074/jbc.M115.664649. Epub 2015 Oct 14.

18.

Vectored antibody gene delivery mediates long-term contraception.

Li J, Olvera AI, Akbari OS, Moradian A, Sweredoski MJ, Hess S, Hay BA.

Curr Biol. 2015 Oct 5;25(19):R820-2. doi: 10.1016/j.cub.2015.08.002.

19.

High resolution parallel reaction monitoring with electron transfer dissociation for middle-down proteomics.

Sweredoski MJ, Moradian A, Raedle M, Franco C, Hess S.

Anal Chem. 2015 Aug 18;87(16):8360-6. doi: 10.1021/acs.analchem.5b01542. Epub 2015 Jul 28.

PMID:
26176279
20.

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.

McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, Plath K, Guttman M.

Nature. 2015 May 14;521(7551):232-6. doi: 10.1038/nature14443. Epub 2015 Apr 27.

21.

Cell-specific proteomic analysis in Caenorhabditis elegans.

Yuet KP, Doma MK, Ngo JT, Sweredoski MJ, Graham RL, Moradian A, Hess S, Schuman EM, Sternberg PW, Tirrell DA.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2705-10. doi: 10.1073/pnas.1421567112. Epub 2015 Feb 17.

22.

Oxidation of p53 through DNA charge transport involves a network of disulfides within the DNA-binding domain.

Schaefer KN, Geil WM, Sweredoski MJ, Moradian A, Hess S, Barton JK.

Biochemistry. 2015 Jan 27;54(3):932-41. doi: 10.1021/bi501424v. Epub 2015 Jan 13.

23.

Mutations in CIC and IDH1 cooperatively regulate 2-hydroxyglutarate levels and cell clonogenicity.

Chittaranjan S, Chan S, Yang C, Yang KC, Chen V, Moradian A, Firme M, Song J, Go NE, Blough MD, Chan JA, Cairncross JG, Gorski SM, Morin GB, Yip S, Marra MA.

Oncotarget. 2014 Sep 15;5(17):7960-79.

24.

The Drosophila effector caspase Dcp-1 regulates mitochondrial dynamics and autophagic flux via SesB.

DeVorkin L, Go NE, Hou YC, Moradian A, Morin GB, Gorski SM.

J Cell Biol. 2014 May 26;205(4):477-92. doi: 10.1083/jcb.201303144.

25.

The top-down, middle-down, and bottom-up mass spectrometry approaches for characterization of histone variants and their post-translational modifications.

Moradian A, Kalli A, Sweredoski MJ, Hess S.

Proteomics. 2014 Mar;14(4-5):489-97. doi: 10.1002/pmic.201300256. Epub 2013 Dec 16. Review.

PMID:
24339419
26.

The mammalian proteins MMS19, MIP18, and ANT2 are involved in cytoplasmic iron-sulfur cluster protein assembly.

van Wietmarschen N, Moradian A, Morin GB, Lansdorp PM, Uringa EJ.

J Biol Chem. 2012 Dec 21;287(52):43351-8. doi: 10.1074/jbc.M112.431270. Epub 2012 Nov 13.

27.

Interaction of cyclin-dependent kinase 12/CrkRS with cyclin K1 is required for the phosphorylation of the C-terminal domain of RNA polymerase II.

Cheng SW, Kuzyk MA, Moradian A, Ichu TA, Chang VC, Tien JF, Vollett SE, Griffith M, Marra MA, Morin GB.

Mol Cell Biol. 2012 Nov;32(22):4691-704. doi: 10.1128/MCB.06267-11. Epub 2012 Sep 17.

28.

Molecular and structural characterization of the SH3 domain of AHI-1 in regulation of cellular resistance of BCR-ABL(+) chronic myeloid leukemia cells to tyrosine kinase inhibitors.

Liu X, Chen M, Lobo P, An J, Grace Cheng SW, Moradian A, Morin GB, Van Petegem F, Jiang X.

Proteomics. 2012 Jul;12(13):2094-106. doi: 10.1002/pmic.201100553.

PMID:
22623184
29.

The clonal and mutational evolution spectrum of primary triple-negative breast cancers.

Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, Bernard V, McPherson A, Shumansky K, Crisan A, Giuliany R, Heravi-Moussavi A, Rosner J, Lai D, Birol I, Varhol R, Tam A, Dhalla N, Zeng T, Ma K, Chan SK, Griffith M, Moradian A, Cheng SW, Morin GB, Watson P, Gelmon K, Chia S, Chin SF, Curtis C, Rueda OM, Pharoah PD, Damaraju S, Mackey J, Hoon K, Harkins T, Tadigotla V, Sigaroudinia M, Gascard P, Tlsty T, Costello JF, Meyer IM, Eaves CJ, Wasserman WW, Jones S, Huntsman D, Hirst M, Caldas C, Marra MA, Aparicio S.

Nature. 2012 Apr 4;486(7403):395-9. doi: 10.1038/nature10933.

30.

Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.

Yip S, Butterfield YS, Morozova O, Chittaranjan S, Blough MD, An J, Birol I, Chesnelong C, Chiu R, Chuah E, Corbett R, Docking R, Firme M, Hirst M, Jackman S, Karsan A, Li H, Louis DN, Maslova A, Moore R, Moradian A, Mungall KL, Perizzolo M, Qian J, Roldan G, Smith EE, Tamura-Wells J, Thiessen N, Varhol R, Weiss S, Wu W, Young S, Zhao Y, Mungall AJ, Jones SJ, Morin GB, Chan JA, Cairncross JG, Marra MA.

J Pathol. 2012 Jan;226(1):7-16. doi: 10.1002/path.2995. Epub 2011 Nov 10.

31.

A tripartite complex composed of ETV6-NTRK3, IRS1 and IGF1R is required for ETV6-NTRK3-mediated membrane localization and transformation.

Tognon CE, Martin MJ, Moradian A, Trigo G, Rotblat B, Cheng SW, Pollard M, Uy E, Chow C, Carboni JM, Gottardis MM, Pollak M, Morin GB, Sorensen PH.

Oncogene. 2012 Mar 8;31(10):1334-40. doi: 10.1038/onc.2011.323. Epub 2011 Aug 1.

PMID:
21804605
32.

A submicron device to rectify a square-wave angular velocity.

Moradian A, Miri MF.

Eur Phys J E Soft Matter. 2011 Feb;34(2):12. doi: 10.1140/epje/i2011-11012-1. Epub 2011 Feb 16.

PMID:
21337018
33.

Dynamics of noncontact rack-and-pinion device: Periodic back-and-forth motion of the rack.

Nasiri M, Moradian A, Miri M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Sep;82(3 Pt 2):037101. Epub 2010 Sep 1.

PMID:
21230211
34.

Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation.

Yap DB, Chu J, Berg T, Schapira M, Cheng SW, Moradian A, Morin RD, Mungall AJ, Meissner B, Boyle M, Marquez VE, Marra MA, Gascoyne RD, Humphries RK, Arrowsmith CH, Morin GB, Aparicio SA.

Blood. 2011 Feb 24;117(8):2451-9. doi: 10.1182/blood-2010-11-321208. Epub 2010 Dec 29.

35.

Cytosolic protein interactions of the schizophrenia susceptibility gene dysbindin.

Mead CL, Kuzyk MA, Moradian A, Wilson GM, Holt RA, Morin GB.

J Neurochem. 2010 Jun;113(6):1491-503. doi: 10.1111/j.1471-4159.2010.06690.x. Epub 2010 Mar 14.

36.

Mass selective axial ion ejection from linear quadrupoles with added octopole fields.

Moradian A, Douglas DJ.

J Am Soc Mass Spectrom. 2008 Feb;19(2):270-80. Epub 2007 Nov 12.

37.
38.

Flame atomic absorption spectrometry determination of trace amounts of copper after separation and preconcentration onto TDMBAC-treated analcime pyrocatechol-immobilized.

Afzali D, Mostafavi A, Taher MA, Moradian A.

Talanta. 2007 Feb 15;71(2):971-5. doi: 10.1016/j.talanta.2006.05.012. Epub 2006 Jun 19.

PMID:
19071401
40.

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