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Items: 1 to 50 of 101


Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies.

Kreer C, Gruell H, Mora T, Walczak AM, Klein F.

Vaccines (Basel). 2020 Jan 1;8(1). pii: E13. doi: 10.3390/vaccines8010013. Review.


Effectiveness and cost-effectiveness of Improving clinicians' diagnostic and communication Skills on Antibiotic prescribing Appropriateness in patients with acute Cough in primary care in CATalonia (the ISAAC-CAT study): study protocol for a cluster randomised controlled trial.

Ruiz R, Moragas A, Trapero-Bertran M, Sisó A, Berenguera A, Oliva G, Borràs-Santos A, García-Sangenís A, Puig-Junoy J, Cots JM, Morros R, Mora T, Lanau-Roig A, Monfà R, Troncoso A, Abellana RM, Gálvez P, Medina-Perucha L, Bjerrum L, Amo I, Barragán N, Llor C.

Trials. 2019 Dec 17;20(1):740. doi: 10.1186/s13063-019-3727-3.


Physical Limit to Concentration Sensing in a Changing Environment.

Mora T, Nemenman I.

Phys Rev Lett. 2019 Nov 8;123(19):198101. doi: 10.1103/PhysRevLett.123.198101.


Measuring the effects on quality of life and alcohol consumption of a program to reduce binge drinking in Spanish adolescents.

Vargas-Martínez AM, Trapero-Bertran M, Lima-Serrano M, Anokye N, Pokhrel S, Mora T.

Drug Alcohol Depend. 2019 Dec 1;205:107597. doi: 10.1016/j.drugalcdep.2019.107597. Epub 2019 Sep 30.


Size and structure of the sequence space of repeat proteins.

Marchi J, Galpern EA, Espada R, Ferreiro DU, Walczak AM, Mora T.

PLoS Comput Biol. 2019 Aug 15;15(8):e1007282. doi: 10.1371/journal.pcbi.1007282. eCollection 2019 Aug.


Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems.

Marchi J, Lässig M, Mora T, Walczak AM.

Pathogens. 2019 Jul 29;8(3). pii: E115. doi: 10.3390/pathogens8030115.


Fierce Selection and Interference in B-Cell Repertoire Response to Chronic HIV-1.

Nourmohammad A, Otwinowski J, Łuksza M, Mora T, Walczak AM.

Mol Biol Evol. 2019 Oct 1;36(10):2184-2194. doi: 10.1093/molbev/msz143.


Detecting T cell receptors involved in immune responses from single repertoire snapshots.

Pogorelyy MV, Minervina AA, Shugay M, Chudakov DM, Lebedev YB, Mora T, Walczak AM.

PLoS Biol. 2019 Jun 13;17(6):e3000314. doi: 10.1371/journal.pbio.3000314. eCollection 2019 Jun.


How a well-adapting immune system remembers.

Mayer A, Balasubramanian V, Walczak AM, Mora T.

Proc Natl Acad Sci U S A. 2019 Apr 30;116(18):8815-8823. doi: 10.1073/pnas.1812810116. Epub 2019 Apr 15.


Receptor crosstalk improves concentration sensing of multiple ligands.

Carballo-Pacheco M, Desponds J, Gavrilchenko T, Mayer A, Prizak R, Reddy G, Nemenman I, Mora T.

Phys Rev E. 2019 Feb;99(2-1):022423. doi: 10.1103/PhysRevE.99.022423.


Cost and benefits of clustered regularly interspaced short palindromic repeats spacer acquisition.

Bradde S, Mora T, Walczak AM.

Philos Trans R Soc Lond B Biol Sci. 2019 May 13;374(1772):20180095. doi: 10.1098/rstb.2018.0095.


Genesis of the αβ T-cell receptor.

Dupic T, Marcou Q, Walczak AM, Mora T.

PLoS Comput Biol. 2019 Mar 4;15(3):e1006874. doi: 10.1371/journal.pcbi.1006874. eCollection 2019 Mar.


Structural, chemical and mechanical study of TiAlV film on UHMWPE produced by DC magnetron sputtering.

Berumen JO, De la Mora T, López-Perrusquia N, Jiménez-Palomar I, Muhl S, Hernández-Navarro C, García E.

J Mech Behav Biomed Mater. 2019 May;93:23-30. doi: 10.1016/j.jmbbm.2019.01.010. Epub 2019 Jan 12.


OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs.

Sethna Z, Elhanati Y, Callan CG, Walczak AM, Mora T.

Bioinformatics. 2019 Sep 1;35(17):2974-2981. doi: 10.1093/bioinformatics/btz035.


Epistasis in a Fitness Landscape Defined by Antibody-Antigen Binding Free Energy.

Adams RM, Kinney JB, Walczak AM, Mora T.

Cell Syst. 2019 Jan 23;8(1):86-93.e3. doi: 10.1016/j.cels.2018.12.004. Epub 2019 Jan 2.


Active degradation of MarA controls coordination of its downstream targets.

Rossi NA, Mora T, Walczak AM, Dunlop MJ.

PLoS Comput Biol. 2018 Dec 27;14(12):e1006634. doi: 10.1371/journal.pcbi.1006634. eCollection 2018 Dec.


Modeling the Correlated Activity of Neural Populations: A Review.

Gardella C, Marre O, Mora T.

Neural Comput. 2019 Feb;31(2):233-269. doi: 10.1162/neco_a_01154. Epub 2018 Dec 21.


Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins.

Pogorelyy MV, Minervina AA, Touzel MP, Sycheva AL, Komech EA, Kovalenko EI, Karganova GG, Egorov ES, Komkov AY, Chudakov DM, Mamedov IZ, Mora T, Walczak AM, Lebedev YB.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12704-12709. doi: 10.1073/pnas.1809642115. Epub 2018 Nov 20.


Origin of Public Memory B Cell Clones in Fish After Antiviral Vaccination.

Magadan S, Jouneau L, Puelma Touzel M, Marillet S, Chara W, Six A, Quillet E, Mora T, Walczak AM, Cazals F, Sunyer O, Fillatreau S, Boudinot P.

Front Immunol. 2018 Sep 27;9:2115. doi: 10.3389/fimmu.2018.02115. eCollection 2018.


A Simple Model for Low Variability in Neural Spike Trains.

Ferrari U, Deny S, Marre O, Mora T.

Neural Comput. 2018 Aug 27:1-28. doi: 10.1162/neco_a_01125. [Epub ahead of print]


The influence of education on the access to childhood immunization: the case of Spain.

Mora T, Trapero-Bertran M.

BMC Public Health. 2018 Jul 18;18(1):893. doi: 10.1186/s12889-018-5810-1.


Evidence for Shaping of Light Chain Repertoire by Structural Selection.

Toledano A, Elhanati Y, Benichou JIC, Walczak AM, Mora T, Louzoun Y.

Front Immunol. 2018 Jun 22;9:1307. doi: 10.3389/fimmu.2018.01307. eCollection 2018.


Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination.

Elhanati Y, Sethna Z, Callan CG Jr, Mora T, Walczak AM.

Immunol Rev. 2018 Jul;284(1):167-179. doi: 10.1111/imr.12665. Review.


Millettia macrophylla (Fabaceae) phenolic fraction prevents differentiation of 3T3-L1 adipocytes and the increased risks of cardiovascular diseases in ovariectomized rats.

Zingue S, do Carmo ÍAR, Tchoumtchoua J, Tchoupang EN, Bratti LOS, Mora TD, Halabalaki M, Njamen D, Creczynski-Pasa TB, Filippin-Monteiro FB.

J Ethnopharmacol. 2018 Aug 10;222:87-98. doi: 10.1016/j.jep.2018.04.046. Epub 2018 May 1.


Does €1 Per Prescription Make a Difference? Impact of a Capped Low-Intensity Pharmaceutical Co-Payment.

García-Gómez P, Mora T, Puig-Junoy J.

Appl Health Econ Health Policy. 2018 Jun;16(3):407-414. doi: 10.1007/s40258-018-0382-x.


Asymmetric adhesion of rod-shaped bacteria controls microcolony morphogenesis.

Duvernoy MC, Mora T, Ardré M, Croquette V, Bensimon D, Quilliet C, Ghigo JM, Balland M, Beloin C, Lecuyer S, Desprat N.

Nat Commun. 2018 Mar 16;9(1):1120. doi: 10.1038/s41467-018-03446-y.


Method for identification of condition-associated public antigen receptor sequences.

Pogorelyy MV, Minervina AA, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM.

Elife. 2018 Mar 13;7. pii: e33050. doi: 10.7554/eLife.33050.


Blindfold learning of an accurate neural metric.

Gardella C, Marre O, Mora T.

Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3267-3272. doi: 10.1073/pnas.1718710115. Epub 2018 Mar 12.


High-throughput immune repertoire analysis with IGoR.

Marcou Q, Mora T, Walczak AM.

Nat Commun. 2018 Feb 8;9(1):561. doi: 10.1038/s41467-018-02832-w.


[IGoR: a tool for learning and simulating the random generation of antigen receptors].

Mora T.

Biol Aujourdhui. 2017;211(3):229-231. doi: 10.1051/jbio/2017033. Epub 2018 Feb 7. French.


Closed-Loop Estimation of Retinal Network Sensitivity by Local Empirical Linearization.

Ferrari U, Gardella C, Marre O, Mora T.

eNeuro. 2018 Jan 23;4(6). pii: ENEURO.0166-17.2017. doi: 10.1523/ENEURO.0166-17.2017. eCollection 2017 Nov-Dec.


A model for the integration of conflicting exogenous and endogenous signals by dendritic cells.

Marcou Q, Carmi-Levy I, Trichot C, Soumelis V, Mora T, Walczak AM.

Phys Biol. 2018 May 16;15(5):056001. doi: 10.1088/1478-3975/aaaa0a.


Transitions in optimal adaptive strategies for populations in fluctuating environments.

Mayer A, Mora T, Rivoire O, Walczak AM.

Phys Rev E. 2017 Sep;96(3-1):032412. doi: 10.1103/PhysRevE.96.032412. Epub 2017 Sep 21.


[On alcoholic beverage taxation in Spain].

Mora T.

Gac Sanit. 2018 Mar - Apr;32(2):176-180. doi: 10.1016/j.gaceta.2017.10.017. Epub 2018 Jan 6. Review. Spanish.


[Evolutionary explanation of the diversity of immune strategies].

Mayer A, Rivoire O, Mora T, Walczak A.

Med Sci (Paris). 2017 Jun-Jul;33(6-7):593-595. doi: 10.1051/medsci/20173306012. Epub 2017 Jul 19. French. No abstract available.


Breakfast choice: An experiment combining a nutritional training workshop targeting adolescents and the promotion of unhealthy products.

Mora T, Lopez-Valcarcel BG.

Health Econ. 2018 Feb;27(2):306-319. doi: 10.1002/hec.3549. Epub 2017 Jul 25.


Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires.

Pogorelyy MV, Elhanati Y, Marcou Q, Sycheva AL, Komech EA, Nazarov VI, Britanova OV, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM.

PLoS Comput Biol. 2017 Jul 6;13(7):e1005572. doi: 10.1371/journal.pcbi.1005572. eCollection 2017 Jul.


Inferring repeat-protein energetics from evolutionary information.

Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU.

PLoS Comput Biol. 2017 Jun 15;13(6):e1005584. doi: 10.1371/journal.pcbi.1005584. eCollection 2017 Jun.


Random versus maximum entropy models of neural population activity.

Ferrari U, Obuchi T, Mora T.

Phys Rev E. 2017 Apr;95(4-1):042321. doi: 10.1103/PhysRevE.95.042321. Epub 2017 Apr 27.


Variable habitat conditions drive species covariation in the human microbiota.

Fisher CK, Mora T, Walczak AM.

PLoS Comput Biol. 2017 Apr 27;13(4):e1005435. doi: 10.1371/journal.pcbi.1005435. eCollection 2017 Apr.


Insights into immune system development and function from mouse T-cell repertoires.

Sethna Z, Elhanati Y, Dudgeon CS, Callan CG Jr, Levine AJ, Mora T, Walczak AM.

Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2253-2258. doi: 10.1073/pnas.1700241114. Epub 2017 Feb 14. Erratum in: Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):E2798. Dudgeon, Chrissy S [corrected to Dudgeon, Crissy R].


Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves.

Adams RM, Mora T, Walczak AM, Kinney JB.

Elife. 2016 Dec 30;5. pii: e23156. doi: 10.7554/eLife.23156.


Local equilibrium in bird flocks.

Mora T, Walczak AM, Castello LD, Ginelli F, Melillo S, Parisi L, Viale M, Cavagna A, Giardina I.

Nat Phys. 2016 Dec;12(12):1153-1157. Epub 2016 Aug 15.


A Tractable Method for Describing Complex Couplings between Neurons and Population Rate.

Gardella C, Marre O, Mora T.

eNeuro. 2016 Aug 18;3(4). pii: ENEURO.0160-15.2016. doi: 10.1523/ENEURO.0160-15.2016. eCollection 2016 Jul-Aug.


Diversity of immune strategies explained by adaptation to pathogen statistics.

Mayer A, Mora T, Rivoire O, Walczak AM.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8630-5. doi: 10.1073/pnas.1600663113. Epub 2016 Jul 18.


Rényi entropy, abundance distribution, and the equivalence of ensembles.

Mora T, Walczak AM.

Phys Rev E. 2016 May;93(5):052418. doi: 10.1103/PhysRevE.93.052418. Epub 2016 May 24.


repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data.

Elhanati Y, Marcou Q, Mora T, Walczak AM.

Bioinformatics. 2016 Jul 1;32(13):1943-51. doi: 10.1093/bioinformatics/btw112. Epub 2016 Feb 26.


Fluctuating fitness shapes the clone-size distribution of immune repertoires.

Desponds J, Mora T, Walczak AM.

Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):274-9. doi: 10.1073/pnas.1512977112. Epub 2015 Dec 28.


Repeat proteins challenge the concept of structural domains.

Espada R, Parra RG, Sippl MJ, Mora T, Walczak AM, Ferreiro DU.

Biochem Soc Trans. 2015 Oct;43(5):844-9. doi: 10.1042/BST20150083. Review.


A Reassessment of IgM Memory Subsets in Humans.

Bagnara D, Squillario M, Kipling D, Mora T, Walczak AM, Da Silva L, Weller S, Dunn-Walters DK, Weill JC, Reynaud CA.

J Immunol. 2015 Oct 15;195(8):3716-24. doi: 10.4049/jimmunol.1500753. Epub 2015 Sep 9.

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