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Picoflow Liquid Chromatography-Mass Spectrometry for Ultrasensitive Bottom-Up Proteomics Using 2-μm-i.d. Open Tubular Columns.

Xiang P, Zhu Y, Yang Y, Zhao Z, Williams SM, Moore RJ, Kelly RT, Smith RD, Liu S.

Anal Chem. 2020 Mar 27. doi: 10.1021/acs.analchem.9b05639. [Epub ahead of print]


A proteome-wide assessment of the oxidative stress paradigm for metal and metal-oxide nanomaterials in human macrophages.

Zhang T, Gaffrey MJ, Thomas DG, Weber TJ, Hess BM, Weitz KK, Piehowski PD, Petyuk VA, Moore RJ, Qian WJ, Thrall BD.

NanoImpact. 2020 Jan;17. doi: 10.1016/j.impact.2019.100194. Epub 2019 Nov 23.


An improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) strategy for precise quantitative single-cell proteomics.

Tsai CF, Zhao R, Williams SM, Moore RJ, Schultz K, Chrisler W, Pasa-Tolic L, Rodland K, Smith RD, Shi T, Zhu Y, Liu T.

Mol Cell Proteomics. 2020 Mar 3. pii: mcp.RA119.001857. doi: 10.1074/mcp.RA119.001857. [Epub ahead of print]


Nanoparticles of selenium as high bioavailable and non-toxic supplement alternatives for broiler chickens.

Gangadoo S, Dinev I, Willson NL, Moore RJ, Chapman J, Stanley D.

Environ Sci Pollut Res Int. 2020 Feb 27. doi: 10.1007/s11356-020-07962-7. [Epub ahead of print]


Polyphasic Characterisation of Cedecea colo sp. nov., a New Enteric Bacterium Isolated from the Koala Hindgut.

Boath JM, Dakhal S, Van TTH, Moore RJ, Dekiwadia C, Macreadie IG.

Microorganisms. 2020 Feb 24;8(2). pii: E309. doi: 10.3390/microorganisms8020309.


Proteogenomic Characterization of Endometrial Carcinoma.

Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D; Clinical Proteomic Tumor Analysis Consortium.

Cell. 2020 Feb 20;180(4):729-748.e26. doi: 10.1016/j.cell.2020.01.026. Epub 2020 Feb 13.


Campylobacter hepaticus, the Cause of Spotty Liver Disease in Chickens: Transmission and Routes of Infection.

Phung C, Vezina B, Anwar A, Wilson T, Scott PC, Moore RJ, Van TTH.

Front Vet Sci. 2020 Jan 15;6:505. doi: 10.3389/fvets.2019.00505. eCollection 2019.


Focal duodenal necrosis in chickens: attempts to reproduce the disease experimentally and diagnostic considerations.

Villegas AM, Stabler L, Moore RJ, Uzal FA, Lacey JA, Hofacre C, Lee M, Ferguson-Noel N, Barber R, Rimet CS, Jerry C, Kim WK, Madison B, França M.

J Vet Diagn Invest. 2020 Mar;32(2):268-276. doi: 10.1177/1040638720901726. Epub 2020 Jan 26.


Reduced environmental bacterial load during early development and gut colonisation has detrimental health consequences in Japanese quail.

Wilkinson N, Hughes RJ, Bajagai YS, Aspden WJ, Hao Van TT, Moore RJ, Stanley D.

Heliyon. 2020 Jan 16;6(1):e03213. doi: 10.1016/j.heliyon.2020.e03213. eCollection 2020 Jan.


Two putative zinc metalloproteases contribute to the virulence of Clostridium perfringens strains that cause avian necrotic enteritis.

Wade B, Keyburn AL, Haring V, Ford M, Rood JI, Moore RJ.

J Vet Diagn Invest. 2020 Mar;32(2):259-267. doi: 10.1177/1040638719898689. Epub 2020 Jan 10.


Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution.

Piehowski PD, Zhu Y, Bramer LM, Stratton KG, Zhao R, Orton DJ, Moore RJ, Yuan J, Mitchell HD, Gao Y, Webb-Robertson BM, Dey SK, Kelly RT, Burnum-Johnson KE.

Nat Commun. 2020 Jan 7;11(1):8. doi: 10.1038/s41467-019-13858-z.


In vitro growth of gut microbiota with selenium nanoparticles.

Gangadoo S, Bauer BW, Bajagai YS, Van TTH, Moore RJ, Stanley D.

Anim Nutr. 2019 Dec;5(4):424-431. doi: 10.1016/j.aninu.2019.06.004. Epub 2019 Jun 27.


Metabolite, Protein, and Lipid Extraction (MPLEx): A Method that Simultaneously Inactivates Middle East Respiratory Syndrome Coronavirus and Allows Analysis of Multiple Host Cell Components Following Infection.

Nicora CD, Sims AC, Bloodsworth KJ, Kim YM, Moore RJ, Kyle JE, Nakayasu ES, Metz TO.

Methods Mol Biol. 2020;2099:173-194. doi: 10.1007/978-1-0716-0211-9_14.


Oregano powder reduces Streptococcus and increases SCFA concentration in a mixed bacterial culture assay.

Bauer BW, Gangadoo S, Bajagai YS, Van TTH, Moore RJ, Stanley D.

PLoS One. 2019 Dec 10;14(12):e0216853. doi: 10.1371/journal.pone.0216853. eCollection 2019.


Polarity and subfield specific effects of transcranial direct current stimulation on hippocampal plasticity.

Rohan JG, Miklasevich MK, McInturf SM, Bechmann NA, Moore RJ, Hatcher-Solis C, Jankord R.

Neurobiol Learn Mem. 2020 Jan;167:107126. doi: 10.1016/j.nlm.2019.107126. Epub 2019 Nov 22.


Data of soil, vegetation and bird species found on double-crested cormorant colonies in the southeastern United States.

Moran Veum L, Dorr BS, Hanson-Dorr K, Moore RJ, Rush SA.

Data Brief. 2019 Oct 29;27:104726. doi: 10.1016/j.dib.2019.104726. eCollection 2019 Dec.


Oregano: A potential prophylactic treatment for the intestinal microbiota.

Bauer BW, Radovanovic A, Willson NL, Bajagai YS, Hao Van TT, Moore RJ, Stanley D.

Heliyon. 2019 Oct 11;5(10):e02625. doi: 10.1016/j.heliyon.2019.e02625. eCollection 2019 Oct.


Characterisation of the intestinal microbiota of commercially farmed saltwater crocodiles, Crocodylus porosus.

Willson NL, Van TTH, Lever J, Moore RJ, Stanley D.

Appl Microbiol Biotechnol. 2019 Nov;103(21-22):8977-8985. doi: 10.1007/s00253-019-10143-3. Epub 2019 Oct 19.


High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.

Dou M, Clair G, Tsai CF, Xu K, Chrisler WB, Sontag RL, Zhao R, Moore RJ, Liu T, Pasa-Tolic L, Smith RD, Shi T, Adkins JN, Qian WJ, Kelly RT, Ansong C, Zhu Y.

Anal Chem. 2019 Oct 15;91(20):13119-13127. doi: 10.1021/acs.analchem.9b03349. Epub 2019 Sep 25.


Tandem Mass Tag Labeling Facilitates Reversed-Phase Liquid Chromatography-Mass Spectrometry Analysis of Hydrophilic Phosphopeptides.

Tsai CF, Smith JS, Krajewski K, Zhao R, Moghieb AM, Nicora CD, Xiong X, Moore RJ, Liu T, Smith RD, Jacobs JM, Rajagopal S, Shi T.

Anal Chem. 2019 Sep 17;91(18):11606-11613. doi: 10.1021/acs.analchem.9b01814. Epub 2019 Aug 28.


Corrigendum: Impact of the Food Additive Titanium Dioxide (E171) on Gut Microbiota-Host Interaction.

Pinget G, Tan J, Janac B, Kaakoush NO, Angelatos AS, O'Sullivan J, Koay YC, Sierro F, Davis J, Divakarla SK, Khanal D, Moore RJ, Stanley D, Chrzanowski W, Macia L.

Front Nutr. 2019 Jul 2;6:100. doi: 10.3389/fnut.2019.00100. eCollection 2019.


Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples.

Dou M, Tsai CF, Piehowski PD, Wang Y, Fillmore TL, Zhao R, Moore RJ, Zhang P, Qian WJ, Smith RD, Liu T, Kelly RT, Shi T, Zhu Y.

Anal Chem. 2019 Aug 6;91(15):9707-9715. doi: 10.1021/acs.analchem.9b01248. Epub 2019 Jul 9.


Genomics of the Pathogenic Clostridia.

Moore RJ, Lacey JA.

Microbiol Spectr. 2019 May;7(3). doi: 10.1128/microbiolspec.GPP3-0033-2018. Review.


Impact of the Food Additive Titanium Dioxide (E171) on Gut Microbiota-Host Interaction.

Pinget G, Tan J, Janac B, Kaakoush NO, Angelatos AS, O'Sullivan J, Koay YC, Sierro F, Davis J, Divakarla SK, Khanal D, Moore RJ, Stanley D, Chrzanowski W, Macia L.

Front Nutr. 2019 May 14;6:57. doi: 10.3389/fnut.2019.00057. eCollection 2019. Erratum in: Front Nutr. 2019 Jul 02;6:100.


We need mandatory training on birth trauma.

Moore RJ.

BMJ. 2019 May 24;365:l2286. doi: 10.1136/bmj.l2286. No abstract available.


Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, Zhao R, Monroe ME, Wang YT, Chambers MC, Slebos RJC, Lau KS, Mo Q, Ding L, Ellis M, Thiagarajan M, Kinsinger CR, Rodriguez H, Smith RD, Rodland KD, Liebler DC, Liu T, Zhang B; Clinical Proteomic Tumor Analysis Consortium.

Cell. 2019 May 2;177(4):1035-1049.e19. doi: 10.1016/j.cell.2019.03.030. Epub 2019 Apr 25.


Feed supplementation with biochar may reduce poultry pathogens, including Campylobacter hepaticus, the causative agent of Spotty Liver Disease.

Willson NL, Van TTH, Bhattarai SP, Courtice JM, McIntyre JR, Prasai TP, Moore RJ, Walsh K, Stanley D.

PLoS One. 2019 Apr 3;14(4):e0214471. doi: 10.1371/journal.pone.0214471. eCollection 2019.


Spotlight on avian pathology: Campylobacter hepaticus, the cause of Spotty Liver Disease in layers.

Moore RJ, Scott PC, Van TTH.

Avian Pathol. 2019 Aug;48(4):285-287. doi: 10.1080/03079457.2019.1602247. Epub 2019 Apr 12.


Survival Mechanisms of Campylobacter hepaticus Identified by Genomic Analysis and Comparative Transcriptomic Analysis of in vivo and in vitro Derived Bacteria.

Van TTH, Lacey JA, Vezina B, Phung C, Anwar A, Scott PC, Moore RJ.

Front Microbiol. 2019 Feb 5;10:107. doi: 10.3389/fmicb.2019.00107. eCollection 2019.


Development of a Luminex xTAG Assay for the Rapid Detection of Five Aminoglycoside Resistance Genes Both in Staphylococci and Enterococci.

Xu F, Chen J, Xiao C, Cong F, Ma L, Moore RJ, Huang R, Guo P.

Microb Drug Resist. 2019 Jul/Aug;25(6):874-879. doi: 10.1089/mdr.2018.0297. Epub 2019 Feb 20.


In silico Identification of Novel Toxin Homologs and Associated Mobile Genetic Elements in Clostridium perfringens.

Lacey JA, Johanesen PA, Lyras D, Moore RJ.

Pathogens. 2019 Jan 29;8(1). pii: E16. doi: 10.3390/pathogens8010016.


Improving mitochondrial function with SS-31 reverses age-related redox stress and improves exercise tolerance in aged mice.

Campbell MD, Duan J, Samuelson AT, Gaffrey MJ, Merrihew GE, Egertson JD, Wang L, Bammler TK, Moore RJ, White CC, Kavanagh TJ, Voss JG, Szeto HH, Rabinovitch PS, MacCoss MJ, Qian WJ, Marcinek DJ.

Free Radic Biol Med. 2019 Apr;134:268-281. doi: 10.1016/j.freeradbiomed.2018.12.031. Epub 2018 Dec 28.


Ultrastructure of the gastro intestinal tract of healthy Japanese quail (Coturnix japonica) using light and scanning electron microscopy.

Wilkinson N, Dinev I, Aspden WJ, Hughes RJ, Christiansen I, Chapman J, Gangadoo S, Moore RJ, Stanley D.

Anim Nutr. 2018 Dec;4(4):378-387. doi: 10.1016/j.aninu.2018.06.006. Epub 2018 Aug 7.


Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards.

Gibbons BC, Fillmore TL, Gao Y, Moore RJ, Liu T, Nakayasu ES, Metz TO, Payne SH.

J Proteome Res. 2019 Feb 1;18(2):694-699. doi: 10.1021/acs.jproteome.8b00688. Epub 2018 Dec 19.


Clostridium perfringens-mediated necrotic enteritis is not influenced by the pre-existing microbiota but is promoted by large changes in the post-challenge microbiota.

Lacey JA, Stanley D, Keyburn AL, Ford M, Chen H, Johanesen P, Lyras D, Moore RJ.

Vet Microbiol. 2018 Dec;227:119-126. doi: 10.1016/j.vetmic.2018.10.022. Epub 2018 Nov 1.


An intermittent hypercaloric diet alters gut microbiota, prefrontal cortical gene expression and social behaviours in rats.

Reichelt AC, Loughman A, Bernard A, Raipuria M, Abbott KN, Dachtler J, Van TTH, Moore RJ.

Nutr Neurosci. 2018 Nov 22:1-15. doi: 10.1080/1028415X.2018.1537169. [Epub ahead of print]


Benchtop-compatible sample processing workflow for proteome profiling of < 100 mammalian cells.

Xu K, Liang Y, Piehowski PD, Dou M, Schwarz KC, Zhao R, Sontag RL, Moore RJ, Zhu Y, Kelly RT.

Anal Bioanal Chem. 2019 Jul;411(19):4587-4596. doi: 10.1007/s00216-018-1493-9. Epub 2018 Nov 20.


Overexpressing ovotransferrin and avian β-defensin-3 improves antimicrobial capacity of chickens and poultry products.

Cooper CA, Tizard ML, Stanborough T, Moore SC, Chandry PS, Jenkins KA, Wise TG, O'Neil TE, Layton DS, Morris KR, Moore RJ, Fegan N, Doran TJ.

Transgenic Res. 2019 Feb;28(1):51-76. doi: 10.1007/s11248-018-0101-2. Epub 2018 Oct 29.


Proteome Profiling of 1 to 5 Spiked Circulating Tumor Cells Isolated from Whole Blood Using Immunodensity Enrichment, Laser Capture Microdissection, Nanodroplet Sample Processing, and Ultrasensitive nanoLC-MS.

Zhu Y, Podolak J, Zhao R, Shukla AK, Moore RJ, Thomas GV, Kelly RT.

Anal Chem. 2018 Oct 16;90(20):11756-11759. doi: 10.1021/acs.analchem.8b03268. Epub 2018 Oct 5.


Increasing the Separation Capacity of Intact Histone Proteoforms Chromatography Coupling Online Weak Cation Exchange-HILIC to Reversed Phase LC UVPD-HRMS.

Gargano AFG, Shaw JB, Zhou M, Wilkins CS, Fillmore TL, Moore RJ, Somsen GW, Paša-Tolić L.

J Proteome Res. 2018 Nov 2;17(11):3791-3800. doi: 10.1021/acs.jproteome.8b00458. Epub 2018 Oct 8.


Nanowell-mediated two-dimensional liquid chromatography enables deep proteome profiling of <1000 mammalian cells.

Dou M, Zhu Y, Liyu A, Liang Y, Chen J, Piehowski PD, Xu K, Zhao R, Moore RJ, Atkinson MA, Mathews CE, Qian WJ, Kelly RT.

Chem Sci. 2018 Jul 18;9(34):6944-6951. doi: 10.1039/c8sc02680g. eCollection 2018 Sep 14.


Development of a reverse transcription recombinase polymerase amplification assay for rapid detection of Theiler's murine encephalomyelitis virus.

Ma L, Cong F, Zhu Y, Wu M, Xu F, Huang R, Moore RJ, Guo P.

Mol Cell Probes. 2018 Oct;41:27-31. doi: 10.1016/j.mcp.2018.08.006. Epub 2018 Aug 26.


Correlations between intestinal innate immune genes and cecal microbiota highlight potential for probiotic development for immune modulation in poultry.

Willson NL, Nattrass GS, Hughes RJ, Moore RJ, Stanley D, Hynd PI, Forder REA.

Appl Microbiol Biotechnol. 2018 Nov;102(21):9317-9329. doi: 10.1007/s00253-018-9281-1. Epub 2018 Aug 27.


A Cobalamin Activity-Based Probe Enables Microbial Cell Growth and Finds New Cobalamin-Protein Interactions across Domains.

Rosnow JJ, Hwang S, Killinger BJ, Kim YM, Moore RJ, Lindemann SR, Maupin-Furlow JA, Wright AT.

Appl Environ Microbiol. 2018 Aug 31;84(18). pii: e00955-18. doi: 10.1128/AEM.00955-18. Print 2018 Sep 15.


Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.

Mertins P, Tang LC, Krug K, Clark DJ, Gritsenko MA, Chen L, Clauser KR, Clauss TR, Shah P, Gillette MA, Petyuk VA, Thomas SN, Mani DR, Mundt F, Moore RJ, Hu Y, Zhao R, Schnaubelt M, Keshishian H, Monroe ME, Zhang Z, Udeshi ND, Mani D, Davies SR, Townsend RR, Chan DW, Smith RD, Zhang H, Liu T, Carr SA.

Nat Protoc. 2018 Jul;13(7):1632-1661. doi: 10.1038/s41596-018-0006-9.


Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets.

Zhu Y, Dou M, Piehowski PD, Liang Y, Wang F, Chu RK, Chrisler WB, Smith JN, Schwarz KC, Shen Y, Shukla AK, Moore RJ, Smith RD, Qian WJ, Kelly RT.

Mol Cell Proteomics. 2018 Sep;17(9):1864-1874. doi: 10.1074/mcp.TIR118.000686. Epub 2018 Jun 24.


Author Correction: Informed-Proteomics: open-source software package for top-down proteomics.

Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, Smith RD, Payne SH, Kim S.

Nat Methods. 2018 Jul;15(7):554. doi: 10.1038/s41592-018-0040-0.


Invariant Natural Killer T Cells Shape the Gut Microbiota and Regulate Neutrophil Recruitment and Function During Intestinal Inflammation.

Shen S, Prame Kumar K, Stanley D, Moore RJ, Van TTH, Wen SW, Hickey MJ, Wong CHY.

Front Immunol. 2018 May 7;9:999. doi: 10.3389/fimmu.2018.00999. eCollection 2018.


Expansion of the Clostridium perfringens toxin-based typing scheme.

Rood JI, Adams V, Lacey J, Lyras D, McClane BA, Melville SB, Moore RJ, Popoff MR, Sarker MR, Songer JG, Uzal FA, Van Immerseel F.

Anaerobe. 2018 Oct;53:5-10. doi: 10.1016/j.anaerobe.2018.04.011. Epub 2018 Apr 20. Review.


Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS.

Zhu Y, Clair G, Chrisler WB, Shen Y, Zhao R, Shukla AK, Moore RJ, Misra RS, Pryhuber GS, Smith RD, Ansong C, Kelly RT.

Angew Chem Int Ed Engl. 2018 Sep 17;57(38):12370-12374. doi: 10.1002/anie.201802843. Epub 2018 Jun 14.

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