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Items: 1 to 50 of 453

1.

Cobalamin activity-based probe enables microbial cell growth and finds new cobalamin-protein interactions across domains.

Rosnow JJ, Hwang S, Killinger BJ, Kim YM, Moore RJ, Lindemann SR, Maupin-Furlow JA, Wright AT.

Appl Environ Microbiol. 2018 Jul 13. pii: AEM.00955-18. doi: 10.1128/AEM.00955-18. [Epub ahead of print]

PMID:
30006406
2.

Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.

Mertins P, Tang LC, Krug K, Clark DJ, Gritsenko MA, Chen L, Clauser KR, Clauss TR, Shah P, Gillette MA, Petyuk VA, Thomas SN, Mani DR, Mundt F, Moore RJ, Hu Y, Zhao R, Schnaubelt M, Keshishian H, Monroe ME, Zhang Z, Udeshi ND, Mani D, Davies SR, Townsend RR, Chan DW, Smith RD, Zhang H, Liu T, Carr SA.

Nat Protoc. 2018 Jul 9. doi: 10.1038/s41596-018-0006-9. [Epub ahead of print]

PMID:
29988108
3.

Spatially resolved proteome mapping of laser capture microdissected tissue with automated sample transfer to nanodroplets.

Zhu Y, Dou M, Piehowski PD, Liang Y, Wang F, Chu RK, Chrisler W, Smith JN, Schwarz KC, Shen Y, Shukla AK, Moore RJ, Smith RD, Qian WJ, Kelly RT.

Mol Cell Proteomics. 2018 Jun 24. pii: mcp.TIR118.000686. doi: 10.1074/mcp.TIR118.000686. [Epub ahead of print]

4.

Author Correction: Informed-Proteomics: open-source software package for top-down proteomics.

Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, Smith RD, Payne SH, Kim S.

Nat Methods. 2018 Jul;15(7):554. doi: 10.1038/s41592-018-0040-0.

PMID:
29899368
5.

Invariant Natural Killer T Cells Shape the Gut Microbiota and Regulate Neutrophil Recruitment and Function During Intestinal Inflammation.

Shen S, Prame Kumar K, Stanley D, Moore RJ, Van TTH, Wen SW, Hickey MJ, Wong CHY.

Front Immunol. 2018 May 7;9:999. doi: 10.3389/fimmu.2018.00999. eCollection 2018.

6.

Expansion of the Clostridium perfringens toxin-based typing scheme.

Rood JI, Adams V, Lacey J, Lyras D, McClane BA, Melville SB, Moore RJ, Popoff MR, Sarker MR, Songer JG, Uzal FA, Van Immerseel F.

Anaerobe. 2018 Apr 20. pii: S1075-9964(18)30068-4. doi: 10.1016/j.anaerobe.2018.04.011. [Epub ahead of print]

PMID:
29866424
7.

Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS.

Zhu Y, Clair G, Chrisler WB, Shen Y, Zhao R, Shukla AK, Moore RJ, Misra RS, Pryhuber GS, Smith RD, Ansong C, Kelly RT.

Angew Chem Int Ed Engl. 2018 May 24. doi: 10.1002/anie.201802843. [Epub ahead of print]

PMID:
29797682
8.

Whole genome analysis reveals the diversity and evolutionary relationships between necrotic enteritis-causing strains of Clostridium perfringens.

Lacey JA, Allnutt TR, Vezina B, Van TTH, Stent T, Han X, Rood JI, Wade B, Keyburn AL, Seemann T, Chen H, Haring V, Johanesen PA, Lyras D, Moore RJ.

BMC Genomics. 2018 May 22;19(1):379. doi: 10.1186/s12864-018-4771-1.

9.

QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data.

Stanfill BA, Nakayasu ES, Bramer LM, Thompson AM, Ansong CK, Clauss T, Gritsenko MA, Monroe ME, Moore RJ, Orton DJ, Piehowski PD, Schepmoes AA, Smith RD, Webb-Robertson BJ, Metz TO; TEDDY Study Group.

Mol Cell Proteomics. 2018 Apr 17. pii: mcp.RA118.000648. doi: 10.1074/mcp.RA118.000648. [Epub ahead of print]

10.

Subnanogram proteomics: impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples.

Zhu Y, Zhao R, Piehowski PD, Moore RJ, Lim S, Orphan VJ, Paša-Tolić L, Qian WJ, Smith RD, Kelly RT.

Int J Mass Spectrom. 2018 Apr;427:4-10. doi: 10.1016/j.ijms.2017.08.016. Epub 2017 Sep 1.

PMID:
29576737
11.

At-hatch administration of probiotic to chickens can introduce beneficial changes in gut microbiota.

Baldwin S, Hughes RJ, Hao Van TT, Moore RJ, Stanley D.

PLoS One. 2018 Mar 23;13(3):e0194825. doi: 10.1371/journal.pone.0194825. eCollection 2018.

12.

Time-resolved proteome profiling of normal lung development.

Moghieb A, Clair G, Mitchell HD, Kitzmiller J, Zink EM, Kim YM, Petyuk V, Shukla A, Moore RJ, Metz TO, Carson J, McDermott JE, Corley RA, Whitsett JA, Ansong C.

Am J Physiol Lung Cell Mol Physiol. 2018 Jul 1;315(1):L11-L24. doi: 10.1152/ajplung.00316.2017. Epub 2018 Mar 8.

PMID:
29516783
13.

Salmonella enterica subsp. salamae serovar Sofia, a prevalent serovar in Australian broiler chickens, is also capable of transient colonisation in layers.

Cooper C, Moore SC, Moore RJ, Chandry PS, Fegan N.

Br Poult Sci. 2018 Jun;59(3):270-277. doi: 10.1080/00071668.2018.1447083. Epub 2018 Mar 14.

PMID:
29493264
14.

Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells.

Zhu Y, Piehowski PD, Zhao R, Chen J, Shen Y, Moore RJ, Shukla AK, Petyuk VA, Campbell-Thompson M, Mathews CE, Smith RD, Qian WJ, Kelly RT.

Nat Commun. 2018 Feb 28;9(1):882. doi: 10.1038/s41467-018-03367-w.

15.
16.

An insight into intestinal mucosal microbiota disruption after stroke.

Stanley D, Moore RJ, Wong CHY.

Sci Rep. 2018 Jan 12;8(1):568. doi: 10.1038/s41598-017-18904-8.

17.

SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids.

Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, Blackwell AE, Swinford G, Sausen J, Kurulugama RT, Eno N, Darland E, Stafford G, Fjeldsted J, Metz TO, Teeguarden JG, Smith RD, Baker ES.

Clin Mass Spectrom. 2016 Dec;2:1-10. doi: 10.1016/j.clinms.2016.11.002. Epub 2016 Dec 29.

18.

Selenium nanoparticles in poultry feed modify gut microbiota and increase abundance of Faecalibacterium prausnitzii.

Gangadoo S, Dinev I, Chapman J, Hughes RJ, Van TTH, Moore RJ, Stanley D.

Appl Microbiol Biotechnol. 2018 Feb;102(3):1455-1466. doi: 10.1007/s00253-017-8688-4. Epub 2017 Dec 17.

PMID:
29250719
19.

A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements.

Orton DJ, Tfaily MM, Moore RJ, LaMarche BL, Zheng X, Fillmore TL, Chu RK, Weitz KK, Monroe ME, Kelly RT, Smith RD, Baker ES.

Anal Chem. 2018 Jan 2;90(1):737-744. doi: 10.1021/acs.analchem.7b02986. Epub 2017 Dec 13.

20.

Erratum: Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes.

Mariño E, Richards JL, McLeod KH, Stanley D, Yap YA, Knight J, McKenzie C, Kranich J, Oliveira AC, Rossello FJ, Krishnamurthy B, Nefzger CM, Macia L, Thorburn A, Baxter AG, Morahan G, Wong LH, Polo JM, Moore RJ, Lockett TJ, Clarke JM, Topping DL, Harrison LC, Mackay CR.

Nat Immunol. 2017 Oct 18;18(11):1271. doi: 10.1038/ni1117-1271c.

PMID:
29044240
21.

Conjugation-mediated horizontal gene transfer of Clostridium perfringens plasmids in the chicken gastrointestinal tract results in the formation of new virulent strains.

Lacey JA, Keyburn AL, Ford ME, Portela RW, Johanesen PA, Lyras D, Moore RJ.

Appl Environ Microbiol. 2017 Oct 13. pii: AEM.01814-17. doi: 10.1128/AEM.01814-17. [Epub ahead of print]

22.

Draft Genome Sequence of Lactobacillus plantarum Strain A6, a Strong Acid Producer Isolated from a Vietnamese Fermented Sausage (Nem Chua).

Golneshin A, Gor MC, Van TTH, May B, Moore RJ, Smith AT.

Genome Announc. 2017 Oct 12;5(41). pii: e00987-17. doi: 10.1128/genomeA.00987-17.

23.

Quantitative Proteomic Analysis of Mass Limited Tissue Samples for Spatially Resolved Tissue Profiling.

Piehowski PD, Zhao R, Moore RJ, Clair G, Ansong C.

Methods Mol Biol. 2017 Oct 5. doi: 10.1007/7651_2017_78. [Epub ahead of print]

PMID:
28980276
24.

A Qualitative Study of Motivating Factors for Pharmacy Student Leadership.

Moore RJ, Ginsburg DB.

Am J Pharm Educ. 2017 Aug;81(6):114. doi: 10.5688/ajpe816114.

25.

Active molecular iodine photochemistry in the Arctic.

Raso ARW, Custard KD, May NW, Tanner D, Newburn MK, Walker L, Moore RJ, Huey LG, Alexander L, Shepson PB, Pratt KA.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10053-10058. doi: 10.1073/pnas.1702803114. Epub 2017 Sep 5.

26.

Beneficial microbial signals from alternative feed ingredients: a way to improve sustainability of broiler production?

Van Immerseel F, Eeckhaut V, Moore RJ, Choct M, Ducatelle R.

Microb Biotechnol. 2017 Sep;10(5):1008-1011. doi: 10.1111/1751-7915.12794. Epub 2017 Aug 25.

27.

Informed-Proteomics: open-source software package for top-down proteomics.

Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, Smith RD, Payne SH, Kim S.

Nat Methods. 2017 Sep;14(9):909-914. doi: 10.1038/nmeth.4388. Epub 2017 Aug 7. Erratum in: Nat Methods. 2018 Jul;15(7):554.

28.

Campylobacter hepaticus, the cause of spotty liver disease in chickens, is present throughout the small intestine and caeca of infected birds.

Van TTH, Gor MC, Anwar A, Scott PC, Moore RJ.

Vet Microbiol. 2017 Aug;207:226-230. doi: 10.1016/j.vetmic.2017.06.022. Epub 2017 Jun 29.

PMID:
28757028
29.

The time-course of broiler intestinal microbiota development after administration of cecal contents to incubating eggs.

Donaldson EE, Stanley D, Hughes RJ, Moore RJ.

PeerJ. 2017 Jul 20;5:e3587. doi: 10.7717/peerj.3587. eCollection 2017.

30.

Erratum: Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes.

Mariño E, Richards JL, McLeod KH, Stanley D, Yap YA, Knight J, McKenzie C, Kranich J, Oliveira AC, Rossello FJ, Krishnamurthy B, Nefzger CM, Macia L, Thorburn A, Baxter AG, Morahan G, Wong LH, Polo JM, Moore RJ, Lockett TJ, Clarke JM, Topping DL, Harrison LC, Mackay CR.

Nat Immunol. 2017 Jul 19;18(8):951. doi: 10.1038/ni0817-951c. No abstract available.

PMID:
28722715
31.

Nutritional Ketosis Affects Metabolism and Behavior in Sprague-Dawley Rats in Both Control and Chronic Stress Environments.

Brownlow ML, Jung SH, Moore RJ, Bechmann N, Jankord R.

Front Mol Neurosci. 2017 May 15;10:129. doi: 10.3389/fnmol.2017.00129. eCollection 2017.

32.

Engagement With Online Tobacco Marketing and Associations With Tobacco Product Use Among U.S. Youth.

Soneji S, Pierce JP, Choi K, Portnoy DB, Margolis KA, Stanton CA, Moore RJ, Bansal-Travers M, Carusi C, Hyland A, Sargent J.

J Adolesc Health. 2017 Jul;61(1):61-69. doi: 10.1016/j.jadohealth.2017.01.023. Epub 2017 Mar 28.

33.

Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes.

Mariño E, Richards JL, McLeod KH, Stanley D, Yap YA, Knight J, McKenzie C, Kranich J, Oliveira AC, Rossello FJ, Krishnamurthy B, Nefzger CM, Macia L, Thorburn A, Baxter AG, Morahan G, Wong LH, Polo JM, Moore RJ, Lockett TJ, Clarke JM, Topping DL, Harrison LC, Mackay CR.

Nat Immunol. 2017 May;18(5):552-562. doi: 10.1038/ni.3713. Epub 2017 Mar 27. Erratum in: Nat Immunol. 2017 Oct 18;18(11):1271. Nat Immunol. 2017 Jul 19;18(8):951.

PMID:
28346408
34.

Frontal burr hole approach for neuroendoscopic resection of craniopharyngioma with the NICO Myriad device: report of two cases.

Moore RJ, Scherer A, Fulkerson DH.

Childs Nerv Syst. 2017 Apr;33(4):659-664. doi: 10.1007/s00381-017-3386-1. Epub 2017 Mar 21.

PMID:
28324187
35.

Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.

Zheng X, Wojcik R, Zhang X, Ibrahim YM, Burnum-Johnson KE, Orton DJ, Monroe ME, Moore RJ, Smith RD, Baker ES.

Annu Rev Anal Chem (Palo Alto Calif). 2017 Jun 12;10(1):71-92. doi: 10.1146/annurev-anchem-061516-045212. Epub 2017 Feb 23. Review.

36.

Sorghum and wheat differentially affect caecal microbiota and associated performance characteristics of meat chickens.

Crisol-Martínez E, Stanley D, Geier MS, Hughes RJ, Moore RJ.

PeerJ. 2017 Mar 7;5:e3071. doi: 10.7717/peerj.3071. eCollection 2017.

37.

A gut reaction: the combined influence of exercise and diet on gastrointestinal microbiota in rats.

Batacan RB, Fenning AS, Dalbo VJ, Scanlan AT, Duncan MJ, Moore RJ, Stanley D.

J Appl Microbiol. 2017 Jun;122(6):1627-1638. doi: 10.1111/jam.13442.

PMID:
28276612
38.

Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.

Liberton M, Chrisler WB, Nicora CD, Moore RJ, Smith RD, Koppenaal DW, Pakrasi HB, Jacobs JM.

PLoS One. 2017 Mar 2;12(3):e0173251. doi: 10.1371/journal.pone.0173251. eCollection 2017.

39.

Understanding the mechanisms of zinc bacitracin and avilamycin on animal production: linking gut microbiota and growth performance in chickens.

Crisol-Martínez E, Stanley D, Geier MS, Hughes RJ, Moore RJ.

Appl Microbiol Biotechnol. 2017 Jun;101(11):4547-4559. doi: 10.1007/s00253-017-8193-9. Epub 2017 Feb 28.

PMID:
28243710
40.

Induction of spotty liver disease in layer hens by infection with Campylobacter hepaticus.

Van TT, Elshagmani E, Gor MC, Anwar A, Scott PC, Moore RJ.

Vet Microbiol. 2017 Feb;199:85-90. doi: 10.1016/j.vetmic.2016.12.033. Epub 2016 Dec 28.

PMID:
28110791
41.

Zeolite food supplementation reduces abundance of enterobacteria.

Prasai TP, Walsh KB, Bhattarai SP, Midmore DJ, Van TT, Moore RJ, Stanley D.

Microbiol Res. 2017 Jan;195:24-30. doi: 10.1016/j.micres.2016.11.006. Epub 2016 Nov 16.

42.

Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples.

Clair G, Piehowski PD, Nicola T, Kitzmiller JA, Huang EL, Zink EM, Sontag RL, Orton DJ, Moore RJ, Carson JP, Smith RD, Whitsett JA, Corley RA, Ambalavanan N, Ansong C.

Sci Rep. 2016 Dec 22;6:39223. doi: 10.1038/srep39223.

43.

Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.

Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, Smith RD, Burnum-Johnson KE, Baker ES.

Rapid Commun Mass Spectrom. 2017 Mar 15;31(5):447-456. doi: 10.1002/rcm.7808.

44.

The adherent abilities of Clostridium perfringens strains are critical for the pathogenesis of avian necrotic enteritis.

Wade B, Keyburn AL, Haring V, Ford M, Rood JI, Moore RJ.

Vet Microbiol. 2016 Dec 25;197:53-61. doi: 10.1016/j.vetmic.2016.10.028. Epub 2016 Oct 31.

PMID:
27938683
45.

Translocation and dissemination of commensal bacteria in post-stroke infection.

Stanley D, Mason LJ, Mackin KE, Srikhanta YN, Lyras D, Prakash MD, Nurgali K, Venegas A, Hill MD, Moore RJ, Wong CH.

Nat Med. 2016 Nov;22(11):1277-1284. doi: 10.1038/nm.4194. Epub 2016 Oct 3.

PMID:
27694934
46.

Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.

Burnum-Johnson KE, Nie S, Casey CP, Monroe ME, Orton DJ, Ibrahim YM, Gritsenko MA, Clauss TR, Shukla AK, Moore RJ, Purvine SO, Shi T, Qian W, Liu T, Baker ES, Smith RD.

Mol Cell Proteomics. 2016 Dec;15(12):3694-3705. Epub 2016 Sep 25.

47.

Epidemiology of Methicillin-Resistant Staphylococcus aureus Diabetic Foot Infections in a Large Academic Hospital: Implications for Antimicrobial Stewardship.

Reveles KR, Duhon BM, Moore RJ, Hand EO, Howell CK.

PLoS One. 2016 Aug 24;11(8):e0161658. doi: 10.1371/journal.pone.0161658. eCollection 2016.

48.

Experimental design considerations in microbiota/inflammation studies.

Moore RJ, Stanley D.

Clin Transl Immunology. 2016 Jul 22;5(7):e92. doi: 10.1038/cti.2016.41. eCollection 2016 Jul. Review.

49.

Campylobacter hepaticus sp. nov., isolated from chickens with spotty liver disease.

Van TT, Elshagmani E, Gor MC, Scott PC, Moore RJ.

Int J Syst Evol Microbiol. 2016 Nov;66(11):4518-4524. doi: 10.1099/ijsem.0.001383. Epub 2016 Aug 5.

PMID:
27498969
50.

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, Cha SW, Aiyetan P, Woo S, Tian Y, Gritsenko MA, Clauss TR, Choi C, Monroe ME, Thomas S, Nie S, Wu C, Moore RJ, Yu KH, Tabb DL, Fenyö D, Bafna V, Wang Y, Rodriguez H, Boja ES, Hiltke T, Rivers RC, Sokoll L, Zhu H, Shih IM, Cope L, Pandey A, Zhang B, Snyder MP, Levine DA, Smith RD, Chan DW, Rodland KD; CPTAC Investigators.

Cell. 2016 Jul 28;166(3):755-765. doi: 10.1016/j.cell.2016.05.069. Epub 2016 Jun 29.

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