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Neurophysiology of motor skill learning in chronic stroke.

Mooney RA, Cirillo J, Stinear CM, Byblow WD.

Clin Neurophysiol. 2020 Jan 24;131(4):791-798. doi: 10.1016/j.clinph.2019.12.410. [Epub ahead of print]


Neurophysiological mechanisms underlying motor skill learning in young and older adults.

Mooney RA, Cirillo J, Byblow WD.

Exp Brain Res. 2019 Sep;237(9):2331-2344. doi: 10.1007/s00221-019-05599-8. Epub 2019 Jul 9.


The Response of nor and nos Contributes to Staphylococcus aureus Virulence and Metabolism.

Favazzo LJ, Gill AL, Farnsworth CW, Mooney RA, Gill SR.

J Bacteriol. 2019 Apr 9;201(9). pii: e00107-19. doi: 10.1128/JB.00107-19. Print 2019 May 1.


The Influence of Primary Motor Cortex Inhibition on Upper Limb Impairment and Function in Chronic Stroke: A Multimodal Study.

Mooney RA, Ackerley SJ, Rajeswaran DK, Cirillo J, Barber PA, Stinear CM, Byblow WD.

Neurorehabil Neural Repair. 2019 Feb;33(2):130-140. doi: 10.1177/1545968319826052.


Delayed inhibition mechanism for secondary channel factor regulation of ribosomal RNA transcription.

Stumper SK, Ravi H, Friedman LJ, Mooney RA, Corrêa IR Jnr, Gershenson A, Landick R, Gelles J.

Elife. 2019 Feb 5;8. pii: e40576. doi: 10.7554/eLife.40576.


Recommendations for design and conduct of preclinical in vivo studies of orthopedic device-related infection.

Moriarty TF, Harris LG, Mooney RA, Wenke JC, Riool M, Zaat SAJ, Moter A, Schaer TP, Khanna N, Kuehl R, Alt V, Montali A, Liu J, Zeiter S, Busscher HJ, Grainger DW, Richards RG.

J Orthop Res. 2019 Feb;37(2):271-287. doi: 10.1002/jor.24230. Epub 2019 Feb 21. Review.


RNA Polymerase Clamp Movement Aids Dissociation from DNA but Is Not Required for RNA Release at Intrinsic Terminators.

Bellecourt MJ, Ray-Soni A, Harwig A, Mooney RA, Landick R.

J Mol Biol. 2019 Feb 15;431(4):696-713. doi: 10.1016/j.jmb.2019.01.003. Epub 2019 Jan 8.


The elemental mechanism of transcriptional pausing.

Saba J, Chua XY, Mishanina TV, Nayak D, Windgassen TA, Mooney RA, Landick R.

Elife. 2019 Jan 8;8. pii: e40981. doi: 10.7554/eLife.40981.


Adaptive threshold hunting reveals differences in interhemispheric inhibition between young and older adults.

Mooney RA, Cirillo J, Byblow WD.

Eur J Neurosci. 2018 Sep;48(5):2247-2258. doi: 10.1111/ejn.14097. Epub 2018 Aug 28.


Conventional or threshold-hunting TMS? A tale of two SICIs.

Cirillo J, Semmler JG, Mooney RA, Byblow WD.

Brain Stimul. 2018 Nov - Dec;11(6):1296-1305. doi: 10.1016/j.brs.2018.07.047. Epub 2018 Jul 18.


Structural Basis for Transcript Elongation Control by NusG Family Universal Regulators.

Kang JY, Mooney RA, Nedialkov Y, Saba J, Mishanina TV, Artsimovitch I, Landick R, Darst SA.

Cell. 2018 Jun 14;173(7):1650-1662.e14. doi: 10.1016/j.cell.2018.05.017. Epub 2018 Jun 7.


Exacerbated Staphylococcus aureus Foot Infections in Obese/Diabetic Mice Are Associated with Impaired Germinal Center Reactions, Ig Class Switching, and Humoral Immunity.

Farnsworth CW, Schott EM, Benvie A, Kates SL, Schwarz EM, Gill SR, Zuscik MJ, Mooney RA.

J Immunol. 2018 Jul 15;201(2):560-572. doi: 10.4049/jimmunol.1800253. Epub 2018 Jun 1.


Targeting the gut microbiome to treat the osteoarthritis of obesity.

Schott EM, Farnsworth CW, Grier A, Lillis JA, Soniwala S, Dadourian GH, Bell RD, Doolittle ML, Villani DA, Awad H, Ketz JP, Kamal F, Ackert-Bicknell C, Ashton JM, Gill SR, Mooney RA, Zuscik MJ.

JCI Insight. 2018 Apr 19;3(8). pii: 95997. doi: 10.1172/jci.insight.95997. eCollection 2018 Apr 19.


Adaptive threshold hunting for the effects of transcranial direct current stimulation on primary motor cortex inhibition.

Mooney RA, Cirillo J, Byblow WD.

Exp Brain Res. 2018 Jun;236(6):1651-1663. doi: 10.1007/s00221-018-5250-2. Epub 2018 Apr 2.


Life times of metastable states guide regulatory signaling in transcriptional riboswitches.

Helmling C, Klötzner DP, Sochor F, Mooney RA, Wacker A, Landick R, Fürtig B, Heckel A, Schwalbe H.

Nat Commun. 2018 Mar 5;9(1):944. doi: 10.1038/s41467-018-03375-w.


RNA Polymerase Accommodates a Pause RNA Hairpin by Global Conformational Rearrangements that Prolong Pausing.

Kang JY, Mishanina TV, Bellecourt MJ, Mooney RA, Darst SA, Landick R.

Mol Cell. 2018 Mar 1;69(5):802-815.e5. doi: 10.1016/j.molcel.2018.01.018.


Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts.

Boyaci H, Chen J, Lilic M, Palka M, Mooney RA, Landick R, Darst SA, Campbell EA.

Elife. 2018 Feb 26;7. pii: e34823. doi: 10.7554/eLife.34823.


Obesity/type 2 diabetes increases inflammation, periosteal reactive bone formation, and osteolysis during Staphylococcus aureus implant-associated bone infection.

Farnsworth CW, Schott EM, Benvie AM, Zukoski J, Kates SL, Schwarz EM, Gill SR, Zuscik MJ, Mooney RA.

J Orthop Res. 2018 Jun;36(6):1614-1623. doi: 10.1002/jor.23831. Epub 2018 Jan 3.


Trigger loop dynamics can explain stimulation of intrinsic termination by bacterial RNA polymerase without terminator hairpin contact.

Ray-Soni A, Mooney RA, Landick R.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9233-E9242. doi: 10.1073/pnas.1706247114. Epub 2017 Oct 16.


Trigger loop of RNA polymerase is a positional, not acid-base, catalyst for both transcription and proofreading.

Mishanina TV, Palo MZ, Nayak D, Mooney RA, Landick R.

Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):E5103-E5112. doi: 10.1073/pnas.1702383114. Epub 2017 Jun 12.


Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.

Steinert H, Sochor F, Wacker A, Buck J, Helmling C, Hiller F, Keyhani S, Noeske J, Grimm S, Rudolph MM, Keller H, Mooney RA, Landick R, Suess B, Fürtig B, Wöhnert J, Schwalbe H.

Elife. 2017 May 25;6. pii: e21297. doi: 10.7554/eLife.21297.


GABA and primary motor cortex inhibition in young and older adults: a multimodal reliability study.

Mooney RA, Cirillo J, Byblow WD.

J Neurophysiol. 2017 Jul 1;118(1):425-433. doi: 10.1152/jn.00199.2017. Epub 2017 Apr 19.


Architecture of a transcribing-translating expressome.

Kohler R, Mooney RA, Mills DJ, Landick R, Cramer P.

Science. 2017 Apr 14;356(6334):194-197. doi: 10.1126/science.aal3059.


Daily oral consumption of hydrolyzed type 1 collagen is chondroprotective and anti-inflammatory in murine posttraumatic osteoarthritis.

Dar QA, Schott EM, Catheline SE, Maynard RD, Liu Z, Kamal F, Farnsworth CW, Ketz JP, Mooney RA, Hilton MJ, Jonason JH, Prawitt J, Zuscik MJ.

PLoS One. 2017 Apr 6;12(4):e0174705. doi: 10.1371/journal.pone.0174705. eCollection 2017.


Adaptive Upregulation of Clumping Factor A (ClfA) by Staphylococcus aureus in the Obese, Type 2 Diabetic Host Mediates Increased Virulence.

Farnsworth CW, Schott EM, Jensen SE, Zukoski J, Benvie AM, Refaai MA, Kates SL, Schwarz EM, Zuscik MJ, Gill SR, Mooney RA.

Infect Immun. 2017 May 23;85(6). pii: e01005-16. doi: 10.1128/IAI.01005-16. Print 2017 Jun.


Dynamics of GreB-RNA polymerase interaction allow a proofreading accessory protein to patrol for transcription complexes needing rescue.

Tetone LE, Friedman LJ, Osborne ML, Ravi H, Kyzer S, Stumper SK, Mooney RA, Landick R, Gelles J.

Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):E1081-E1090. doi: 10.1073/pnas.1616525114. Epub 2017 Jan 30.


Methionine Metabolites in Patients With Sepsis.

Wexler O, Gough MS, Morgan MAM, Mack CM, Apostolakos MJ, Doolin KP, Mooney RA, Arning E, Bottiglieri T, Pietropaoli AP.

J Intensive Care Med. 2018 Jan;33(1):37-47. doi: 10.1177/0885066616666002. Epub 2016 Sep 2.


Acute aerobic exercise modulates primary motor cortex inhibition.

Mooney RA, Coxon JP, Cirillo J, Glenny H, Gant N, Byblow WD.

Exp Brain Res. 2016 Dec;234(12):3669-3676. Epub 2016 Sep 2.


Reiki's effect on patients with total knee arthroplasty: A pilot study.

Notte BB, Fazzini C, Mooney RA.

Nursing. 2016 Feb;46(2):17-23. doi: 10.1097/01.NURSE.0000476246.16717.65.


Suppressive Effects of Insulin on Tumor Necrosis Factor-Dependent Early Osteoarthritic Changes Associated With Obesity and Type 2 Diabetes Mellitus.

Hamada D, Maynard R, Schott E, Drinkwater CJ, Ketz JP, Kates SL, Jonason JH, Hilton MJ, Zuscik MJ, Mooney RA.

Arthritis Rheumatol. 2016 Jun;68(6):1392-402. doi: 10.1002/art.39561.


Shear wave dispersion in lean versus steatotic rat livers.

Barry CT, Hazard C, Hah Z, Cheng G, Partin A, Mooney RA, Chuang KH, Cao W, Rubens DJ, Parker KJ.

J Ultrasound Med. 2015 Jun;34(6):1123-9. doi: 10.7863/ultra.34.6.1123.


Effects of Combined Exposure to Lead and High-Fat Diet on Bone Quality in Juvenile Male Mice.

Beier EE, Inzana JA, Sheu TJ, Shu L, Puzas JE, Mooney RA.

Environ Health Perspect. 2015 Oct;123(10):935-43. doi: 10.1289/ehp.1408581. Epub 2015 Apr 10.


A humoral immune defect distinguishes the response to Staphylococcus aureus infections in mice with obesity and type 2 diabetes from that in mice with type 1 diabetes.

Farnsworth CW, Shehatou CT, Maynard R, Nishitani K, Kates SL, Zuscik MJ, Schwarz EM, Daiss JL, Mooney RA.

Infect Immun. 2015 Jun;83(6):2264-74. doi: 10.1128/IAI.03074-14. Epub 2015 Mar 23.


High-fat diet causes bone loss in young mice by promoting osteoclastogenesis through alteration of the bone marrow environment.

Shu L, Beier E, Sheu T, Zhang H, Zuscik MJ, Puzas EJ, Boyce BF, Mooney RA, Xing L.

Calcif Tissue Int. 2015 Apr;96(4):313-23. doi: 10.1007/s00223-015-9954-z. Epub 2015 Feb 13.


Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase.

Windgassen TA, Mooney RA, Nayak D, Palangat M, Zhang J, Landick R.

Nucleic Acids Res. 2014 Nov 10;42(20):12707-21. doi: 10.1093/nar/gku997. Epub 2014 Oct 21.


RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement.

Hein PP, Kolb KE, Windgassen T, Bellecourt MJ, Darst SA, Mooney RA, Landick R.

Nat Struct Mol Biol. 2014 Sep;21(9):794-802. doi: 10.1038/nsmb.2867. Epub 2014 Aug 10.


Delayed fracture healing and increased callus adiposity in a C57BL/6J murine model of obesity-associated type 2 diabetes mellitus.

Brown ML, Yukata K, Farnsworth CW, Chen DG, Awad H, Hilton MJ, O'Keefe RJ, Xing L, Mooney RA, Zuscik MJ.

PLoS One. 2014 Jun 9;9(6):e99656. doi: 10.1371/journal.pone.0099656. eCollection 2014.


A pause sequence enriched at translation start sites drives transcription dynamics in vivo.

Larson MH, Mooney RA, Peters JM, Windgassen T, Nayak D, Gross CA, Block SM, Greenleaf WJ, Landick R, Weissman JS.

Science. 2014 May 30;344(6187):1042-7. doi: 10.1126/science.1251871. Epub 2014 May 1.


Mycobacterial RNA polymerase requires a U-tract at intrinsic terminators and is aided by NusG at suboptimal terminators.

Czyz A, Mooney RA, Iaconi A, Landick R.

mBio. 2014 Apr 8;5(2):e00931. doi: 10.1128/mBio.00931-14.


Tendon repair is compromised in a high fat diet-induced mouse model of obesity and type 2 diabetes.

David MA, Jones KH, Inzana JA, Zuscik MJ, Awad HA, Mooney RA.

PLoS One. 2014 Mar 21;9(3):e91234. doi: 10.1371/journal.pone.0091234. eCollection 2014.


DksA guards elongating RNA polymerase against ribosome-stalling-induced arrest.

Zhang Y, Mooney RA, Grass JA, Sivaramakrishnan P, Herman C, Landick R, Wang JD.

Mol Cell. 2014 Mar 6;53(5):766-78. doi: 10.1016/j.molcel.2014.02.005.


Mouse liver dispersion for the diagnosis of early-stage Fatty liver disease: a 70-sample study.

Barry CT, Hah Z, Partin A, Mooney RA, Chuang KH, Augustine A, Almudevar A, Cao W, Rubens DJ, Parker KJ.

Ultrasound Med Biol. 2014 Apr;40(4):704-13. doi: 10.1016/j.ultrasmedbio.2013.10.016. Epub 2014 Jan 10.


Immature mice are more susceptible to the detrimental effects of high fat diet on cancellous bone in the distal femur.

Inzana JA, Kung M, Shu L, Hamada D, Xing LP, Zuscik MJ, Awad HA, Mooney RA.

Bone. 2013 Nov;57(1):174-83. doi: 10.1016/j.bone.2013.08.003. Epub 2013 Aug 14.


RBP-Jκ-dependent Notch signaling is required for murine articular cartilage and joint maintenance.

Mirando AJ, Liu Z, Moore T, Lang A, Kohn A, Osinski AM, O'Keefe RJ, Mooney RA, Zuscik MJ, Hilton MJ.

Arthritis Rheum. 2013 Oct;65(10):2623-33. doi: 10.1002/art.38076.


Building a better stop sign: understanding the signals that terminate transcription.

Mooney RA, Landick R.

Nat Methods. 2013 Jul;10(7):618-9. doi: 10.1038/nmeth.2527. No abstract available.


Cys-pair reporters detect a constrained trigger loop in a paused RNA polymerase.

Nayak D, Voss M, Windgassen T, Mooney RA, Landick R.

Mol Cell. 2013 Jun 27;50(6):882-93. doi: 10.1016/j.molcel.2013.05.015. Epub 2013 Jun 13.


Rho and NusG suppress pervasive antisense transcription in Escherichia coli.

Peters JM, Mooney RA, Grass JA, Jessen ED, Tran F, Landick R.

Genes Dev. 2012 Dec 1;26(23):2621-33. doi: 10.1101/gad.196741.112.


Use of a whole-slide imaging system to assess the presence and alteration of lymphatic vessels in joint sections of arthritic mice.

Shi JX, Liang QQ, Wang YJ, Mooney RA, Boyce BF, Xing L.

Biotech Histochem. 2013 Nov;88(8):428-39. doi: 10.3109/10520295.2012.729864. Epub 2012 Nov 23.


Midtrimester fetal herpes simplex-2 diagnosis by serology, culture and quantitative polymerase chain reaction.

Curtin WM, Menegus MA, Patru MM, Peterson CJ, Metlay LA, Mooney RA, Stanwood NL, Scheible AL, Dorgan A.

Fetal Diagn Ther. 2013;33(2):133-6. doi: 10.1159/000342756. Epub 2012 Oct 11.


Binding and translocation of termination factor rho studied at the single-molecule level.

Koslover DJ, Fazal FM, Mooney RA, Landick R, Block SM.

J Mol Biol. 2012 Nov 9;423(5):664-76. doi: 10.1016/j.jmb.2012.07.027. Epub 2012 Aug 9.

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