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Items: 48

1.

A Generically Parameterized model of Lake eutrophication (GPLake) that links field-, lab- and model-based knowledge.

Chang M, Teurlincx S, DeAngelis DL, Janse JH, Troost TA, van Wijk D, Mooij WM, Janssen ABG.

Sci Total Environ. 2019 Dec 10;695:133887. doi: 10.1016/j.scitotenv.2019.133887. Epub 2019 Aug 13.

2.

Success of lake restoration depends on spatial aspects of nutrient loading and hydrology.

Janssen ABG, van Wijk D, van Gerven LPA, Bakker ES, Brederveld RJ, DeAngelis DL, Janse JH, Mooij WM.

Sci Total Environ. 2019 Aug 20;679:248-259. doi: 10.1016/j.scitotenv.2019.04.443. Epub 2019 May 1.

3.

Modelling induced bank filtration effects on freshwater ecosystems to ensure sustainable drinking water production.

Gillefalk M, Mooij WM, Teurlincx S, Janssen ABG, Janse JH, Chang M, Köhler J, Hilt S.

Water Res. 2019 Jun 15;157:19-29. doi: 10.1016/j.watres.2019.03.048. Epub 2019 Mar 26.

PMID:
30952005
4.

Reversibility and reactivity in an acid catalyzed cyclocondensation to give furanochromanes - a reaction at the 'oxonium-Prins' vs. 'ortho-quinone methide cycloaddition' mechanistic nexus.

Nielsen CD, Mooij WJ, Sale D, Rzepa HS, Burés J, Spivey AC.

Chem Sci. 2018 Oct 19;10(2):406-412. doi: 10.1039/c8sc04302g. eCollection 2019 Jan 14.

5.

Targeting a Subpocket in Trypanosoma brucei Phosphodiesterase B1 (TbrPDEB1) Enables the Structure-Based Discovery of Selective Inhibitors with Trypanocidal Activity.

Blaazer AR, Singh AK, de Heuvel E, Edink E, Orrling KM, Veerman JJN, van den Bergh T, Jansen C, Balasubramaniam E, Mooij WJ, Custers H, Sijm M, Tagoe DNA, Kalejaiye TD, Munday JC, Tenor H, Matheeussen A, Wijtmans M, Siderius M, de Graaf C, Maes L, de Koning HP, Bailey DS, Sterk GJ, de Esch IJP, Brown DG, Leurs R.

J Med Chem. 2018 May 10;61(9):3870-3888. doi: 10.1021/acs.jmedchem.7b01670. Epub 2018 May 1.

6.

Response of Submerged Macrophyte Communities to External and Internal Restoration Measures in North Temperate Shallow Lakes.

Hilt S, Alirangues Nuñez MM, Bakker ES, Blindow I, Davidson TA, Gillefalk M, Hansson LA, Janse JH, Janssen ABG, Jeppesen E, Kabus T, Kelly A, Köhler J, Lauridsen TL, Mooij WM, Noordhuis R, Phillips G, Rücker J, Schuster HH, Søndergaard M, Teurlincx S, van de Weyer K, van Donk E, Waterstraat A, Willby N, Sayer CD.

Front Plant Sci. 2018 Feb 19;9:194. doi: 10.3389/fpls.2018.00194. eCollection 2018.

7.

Multimedia fate modeling of perfluorooctanoic acid (PFOA) and perfluorooctane sulphonate (PFOS) in the shallow lake Chaohu, China.

Kong X, Liu W, He W, Xu F, Koelmans AA, Mooij WM.

Environ Pollut. 2018 Jun;237:339-347. doi: 10.1016/j.envpol.2018.02.026. Epub 2018 Mar 1.

PMID:
29501014
8.

Spatial identification of critical nutrient loads of large shallow lakes: Implications for Lake Taihu (China).

Janssen ABG, de Jager VCL, Janse JH, Kong X, Liu S, Ye Q, Mooij WM.

Water Res. 2017 Aug 1;119:276-287. doi: 10.1016/j.watres.2017.04.045. Epub 2017 Apr 19.

9.

Integrated ecological and chemical food web accumulation modeling explains PAH temporal trends during regime shifts in a shallow lake.

Kong X, He W, Qin N, Liu W, Yang B, Yang C, Xu F, Mooij WM, Koelmans AA.

Water Res. 2017 Aug 1;119:73-82. doi: 10.1016/j.watres.2017.04.042. Epub 2017 Apr 17.

PMID:
28436825
10.

Mowing Submerged Macrophytes in Shallow Lakes with Alternative Stable States: Battling the Good Guys?

Kuiper JJ, Verhofstad MJ, Louwers EL, Bakker ES, Brederveld RJ, van Gerven LP, Janssen AB, de Klein JJ, Mooij WM.

Environ Manage. 2017 Apr;59(4):619-634. doi: 10.1007/s00267-016-0811-2. Epub 2017 Jan 2.

11.

Hydrological regulation drives regime shifts: evidence from paleolimnology and ecosystem modeling of a large shallow Chinese lake.

Kong X, He Q, Yang B, He W, Xu F, Janssen AB, Kuiper JJ, van Gerven LP, Qin N, Jiang Y, Liu W, Yang C, Bai Z, Zhang M, Kong F, Janse JH, Mooij WM.

Glob Chang Biol. 2017 Feb;23(2):737-754. doi: 10.1111/gcb.13416. Epub 2016 Sep 20.

PMID:
27391103
12.

An Integrated Coral Reef Ecosystem Model to Support Resource Management under a Changing Climate.

Weijerman M, Fulton EA, Kaplan IC, Gorton R, Leemans R, Mooij WM, Brainard RE.

PLoS One. 2015 Dec 16;10(12):e0144165. doi: 10.1371/journal.pone.0144165. eCollection 2015.

13.

Food-web stability signals critical transitions in temperate shallow lakes.

Kuiper JJ, van Altena C, de Ruiter PC, van Gerven LPA, Janse JH, Mooij WM.

Nat Commun. 2015 Jul 15;6:7727. doi: 10.1038/ncomms8727.

14.

Competition for light and nutrients in layered communities of aquatic plants.

van Gerven LP, de Klein JJ, Gerla DJ, Kooi BW, Kuiper JJ, Mooij WM.

Am Nat. 2015 Jul;186(1):72-83. doi: 10.1086/681620. Epub 2015 Apr 30.

PMID:
26098340
15.

Pattern formation at multiple spatial scales drives the resilience of mussel bed ecosystems.

Liu QX, Herman PM, Mooij WM, Huisman J, Scheffer M, Olff H, van de Koppel J.

Nat Commun. 2014 Oct 22;5:5234. doi: 10.1038/ncomms6234.

PMID:
25335554
16.

Community stoichiometry in a changing world: combined effects of warming and eutrophication on phytoplankton dynamics.

Domis LN, Van de Waal DB, Helmsing NR, Van Donk E, Mooij WM.

Ecology. 2014 Jun;95(6):1485-95.

PMID:
25039214
17.

Alternative stable states and alternative endstates of community assembly through intra- and interspecific positive and negative interactions.

Gerla DJ, Mooij WM.

Theor Popul Biol. 2014 Sep;96:8-18. doi: 10.1016/j.tpb.2014.07.001. Epub 2014 Jul 10.

PMID:
25018053
18.

Plant functional types define magnitude of drought response in peatland CO2 exchange.

Kuiper JJ, Mooij WM, Bragazza L, Robroek BJ.

Ecology. 2014 Jan;95(1):123-31.

PMID:
24649652
19.

Effects of climate and nutrient load on the water quality of shallow lakes assessed through ensemble runs by PCLake.

Nielsen A, Trolle D, Bjerring R, Søndergaard M, Olesen JE, Janse JH, Mooij WM, Jeppesen E.

Ecol Appl. 2014;24(8):1926-44.

PMID:
29185663
20.

Was Lates late? A null model for the Nile perch boom in Lake Victoria.

Downing AS, Galic N, Goudswaard KP, van Nes EH, Scheffer M, Witte F, Mooij WM.

PLoS One. 2013 Oct 18;8(10):e76847. doi: 10.1371/journal.pone.0076847. eCollection 2013.

21.

Explaining bacterial dispersion on leaf surfaces with an individual-based model (PHYLLOSIM).

van der Wal A, Tecon R, Kreft JU, Mooij WM, Leveau JH.

PLoS One. 2013 Oct 4;8(10):e75633. doi: 10.1371/journal.pone.0075633. eCollection 2013.

22.

Assembling the pieces of Lake Victoria's many food webs: reply to Kolding.

Downing AS, van Nes EH, Janse JH, Witte F, Cornelissen IJ, Scheffer M, Mooij WM.

Ecol Appl. 2013 Apr;23(3):671-5. No abstract available.

PMID:
23734494
23.

Testing the paradox of enrichment along a land use gradient in a multitrophic aboveground and belowground community.

Meyer KM, Vos M, Mooij WM, Hol WH, Termorshuizen AJ, van der Putten WH.

PLoS One. 2012;7(11):e49034. doi: 10.1371/journal.pone.0049034. Epub 2012 Nov 8.

24.

The resilience and resistance of an ecosystem to a collapse of diversity.

Downing AS, van Nes EH, Mooij WM, Scheffer M.

PLoS One. 2012;7(9):e46135. doi: 10.1371/journal.pone.0046135. Epub 2012 Sep 27.

25.

GENOTYPE-BY-TEMPERATURE INTERACTIONS MAY HELP TO MAINTAIN CLONAL DIVERSITY IN ASTERIONELLA FORMOSA (BACILLARIOPHYCEAE).

Gsell AS, de Senerpont Domis LN, Przytulska-Bartosiewicz A, Mooij WM, van Donk E, Ibelings BW.

J Phycol. 2012 Oct;48(5):1197-208. doi: 10.1111/j.1529-8817.2012.01205.x. Epub 2012 Sep 13.

PMID:
27011279
26.

Collapse and reorganization of a food web of Mwanza Gulf, Lake Victoria.

Downing AS, Van Nes EH, Janse JH, Witte F, Cornelissen IJ, Scheffer M, Mooij WM.

Ecol Appl. 2012 Jan;22(1):229-39.

PMID:
22471086
27.

ProteinCCD: enabling the design of protein truncation constructs for expression and crystallization experiments.

Mooij WT, Mitsiki E, Perrakis A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W402-5. doi: 10.1093/nar/gkp256. Epub 2009 Apr 24.

28.

"Conditional Restraints": Restraining the Free Atoms in ARP/wARP.

Mooij WT, Cohen SX, Joosten K, Murshudov GN, Perrakis A.

Structure. 2009 Feb 13;17(2):183-9. doi: 10.1016/j.str.2008.12.011.

29.

Experimental evidence for spatial self-organization and its emergent effects in mussel bed ecosystems.

van de Koppel J, Gascoigne JC, Theraulaz G, Rietkerk M, Mooij WM, Herman PM.

Science. 2008 Oct 31;322(5902):739-42. doi: 10.1126/science.1163952.

30.

Inducible defenses, competition and shared predation in planktonic food chains.

van der Stap I, Vos M, Tollrian R, Mooij WM.

Oecologia. 2008 Oct;157(4):697-705. doi: 10.1007/s00442-008-1111-1. Epub 2008 Jul 25.

PMID:
18654800
31.

The contribution of marsh zones to water quality in Dutch shallow lakes: a modeling study.

Sollie S, Janse JH, Mooij WM, Coops H, Verhoeven JT.

Environ Manage. 2008 Dec;42(6):1002-16. doi: 10.1007/s00267-008-9121-7. Epub 2008 Apr 22.

PMID:
18427883
32.

A knowledge-driven approach for crystallographic protein model completion.

Joosten K, Cohen SX, Emsley P, Mooij W, Lamzin VS, Perrakis A.

Acta Crystallogr D Biol Crystallogr. 2008 Apr;64(Pt 4):416-24. doi: 10.1107/S0907444908001558. Epub 2008 Mar 19.

33.

Adaptation of the fungal parasite Zygorhizidium planktonicum during 200 generations of growth on homogeneous and heterogeneous populations of its host, the diatom Asterionella formosa.

De Bruin A, Ibelings BW, Kagami M, Mooij WM, Van Donk E.

J Eukaryot Microbiol. 2008 Mar-Apr;55(2):69-74. doi: 10.1111/j.1550-7408.2008.00306.x.

PMID:
18318858
34.

Induced defenses in herbivores and plants differentially modulate a trophic cascade.

Van der Stap I, Vos M, Verschoor AM, Helmsing NR, Mooij WM.

Ecology. 2007 Oct;88(10):2474-81.

PMID:
18027750
35.

Diverse, high-quality test set for the validation of protein-ligand docking performance.

Hartshorn MJ, Verdonk ML, Chessari G, Brewerton SC, Mooij WT, Mortenson PN, Murray CW.

J Med Chem. 2007 Feb 22;50(4):726-41.

PMID:
17300160
36.

Can overwintering versus diapausing strategy in Daphnia determine match-mismatch events in zooplankton-algae interactions?

de Senerpont Domis LN, Mooij WM, Hülsmann S, van Nes EH, Scheffer M.

Oecologia. 2007 Jan;150(4):682-98. Epub 2006 Sep 22.

PMID:
17024385
37.

Automated protein-ligand crystallography for structure-based drug design.

Mooij WT, Hartshorn MJ, Tickle IJ, Sharff AJ, Verdonk ML, Jhoti H.

ChemMedChem. 2006 Aug;1(8):827-38.

PMID:
16902937
38.

Pattern-oriented modeling of agent-based complex systems: lessons from ecology.

Grimm V, Revilla E, Berger U, Jeltsch F, Mooij WM, Railsback SF, Thulke HH, Weiner J, Wiegand T, DeAngelis DL.

Science. 2005 Nov 11;310(5750):987-91. Review.

PMID:
16284171
39.

General and targeted statistical potentials for protein-ligand interactions.

Mooij WT, Verdonk ML.

Proteins. 2005 Nov 1;61(2):272-87.

PMID:
16106379
40.

Virtual screening using protein-ligand docking: avoiding artificial enrichment.

Verdonk ML, Berdini V, Hartshorn MJ, Mooij WT, Murray CW, Taylor RD, Watson P.

J Chem Inf Comput Sci. 2004 May-Jun;44(3):793-806.

PMID:
15154744
41.

Crystal structure prediction of small organic molecules: a second blind test.

Motherwell WD, Ammon HL, Dunitz JD, Dzyabchenko A, Erk P, Gavezzotti A, Hofmann DW, Leusen FJ, Lommerse JP, Mooij WT, Price SL, Scheraga H, Schweizer B, Schmidt MU, van Eijck BP, Verwer P, Williams DE.

Acta Crystallogr B. 2002 Aug;58(Pt 4):647-61. Epub 2002 Jul 30.

PMID:
12149555
42.

A test of crystal structure prediction of small organic molecules.

Lommerse JP, Motherwell WD, Ammon HL, Dunitz JD, Gavezzotti A, Hofmann DW, Leusen FJ, Mooij WT, Price SL, Schweizer B, Schmidt MU, van Eijck BP, Verwer P, Williams DE.

Acta Crystallogr B. 2000 Aug;56(Pt 4):697-714.

PMID:
10944263
43.

Detritus-dependent development of the microbial community in an experimental system: qualitative analysis by denaturing gradient gel electrophoresis.

van Hannen EJ, Mooij W, van Agterveld MP, Gons HJ, Laanbroek HJ.

Appl Environ Microbiol. 1999 Jun;65(6):2478-84.

44.

["REJUVENATION CURE" ACCORDING TO PROF. ASLAN].

MOOIJ W.

Geneeskd Gids. 1965 Jun 10;43:290-2. Dutch. No abstract available.

PMID:
14316296
45.

[Typhoid fever in a psychiatric institution].

MOOIJ W.

Ned Tijdschr Geneeskd. 1959 Nov 7;103:2286-7. Dutch. No abstract available.

PMID:
14423796
46.

[Typhoid fever in a psychiatric institution].

MOOIJ W.

Geneeskd Gids. 1958 Jun 5;36(12):194-7. Dutch. No abstract available.

PMID:
13548499
47.

[B influenza in two mental hospitals in Deventer].

MOOIJ W.

Ned Tijdschr Geneeskd. 1953 Jan 24;97(4):204-8. Undetermined Language. No abstract available.

PMID:
13054828
48.

[Sudden, isolated influenza epidemic].

MOOIJ W.

Ned Tijdschr Geneeskd. 1951 Dec 1;95(48):3589-91. Undetermined Language. No abstract available.

PMID:
14919690

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