Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 332

1.

Structural Basis by Which the N-Terminal Polypeptide Segment of Rhizopus chinensis Lipase Regulates Its Substrate Binding Affinity.

Zhang M, Yu XW, Xu Y, Guo RT, Swapna GVT, Szyperski T, Hunt JF, Montelione GT.

Biochemistry. 2019 Sep 11. doi: 10.1021/acs.biochem.9b00462. [Epub ahead of print]

PMID:
31436959
2.

De novo protein design by citizen scientists.

Koepnick B, Flatten J, Husain T, Ford A, Silva DA, Bick MJ, Bauer A, Liu G, Ishida Y, Boykov A, Estep RD, Kleinfelter S, Nørgård-Solano T, Wei L, Players F, Montelione GT, DiMaio F, Popović Z, Khatib F, Cooper S, Baker D.

Nature. 2019 Jun;570(7761):390-394. doi: 10.1038/s41586-019-1274-4. Epub 2019 Jun 5.

PMID:
31168091
3.

A Proteomic Screen of Neuronal Cell-Surface Molecules Reveals IgLONs as Structurally Conserved Interaction Modules at the Synapse.

Ranaivoson FM, Turk LS, Ozgul S, Kakehi S, von Daake S, Lopez N, Trobiani L, De Jaco A, Denissova N, Demeler B, Özkan E, Montelione GT, Comoletti D.

Structure. 2019 Jun 4;27(6):893-906.e9. doi: 10.1016/j.str.2019.03.004. Epub 2019 Apr 4.

PMID:
30956130
4.

The copBL operon protects Staphylococcus aureus from copper toxicity: CopL is an extracellular membrane-associated copper-binding protein.

Rosario-Cruz Z, Eletsky A, Daigham NS, Al-Tameemi H, Swapna GVT, Kahn PC, Szyperski T, Montelione GT, Boyd JM.

J Biol Chem. 2019 Mar 15;294(11):4027-4044. doi: 10.1074/jbc.RA118.004723. Epub 2019 Jan 17.

PMID:
30655293
5.

An ELISA-Based Screening Platform for Ligand-Receptor Discovery.

Ozgul S, von Daake S, Kakehi S, Sereni D, Denissova N, Hanlon C, Huang YJ, Everett JK, Yin C, Montelione GT, Comoletti D.

Methods Enzymol. 2019;615:453-475. doi: 10.1016/bs.mie.2018.10.001. Epub 2018 Dec 28.

PMID:
30638538
6.

A Hybrid Approach for Protein Structure Determination Combining Sparse NMR with Evolutionary Coupling Sequence Data.

Huang YJ, Brock KP, Sander C, Marks DS, Montelione GT.

Adv Exp Med Biol. 2018;1105:153-169. doi: 10.1007/978-981-13-2200-6_10. Review.

7.

Combining Evolutionary Covariance and NMR Data for Protein Structure Determination.

Huang YJ, Brock KP, Ishida Y, Swapna GVT, Inouye M, Marks DS, Sander C, Montelione GT.

Methods Enzymol. 2019;614:363-392. doi: 10.1016/bs.mie.2018.11.004. Epub 2018 Dec 23.

8.

Antiparallel Coiled-Coil Interactions Mediate the Homodimerization of the DNA Damage-Repair Protein PALB2.

Song F, Li M, Liu G, Swapna GVT, Daigham NS, Xia B, Montelione GT, Bunting SF.

Biochemistry. 2018 Nov 27;57(47):6581-6591. doi: 10.1021/acs.biochem.8b00789. Epub 2018 Nov 8.

PMID:
30289697
9.

Minimal Heterochiral de Novo Designed 4Fe-4S Binding Peptide Capable of Robust Electron Transfer.

Kim JD, Pike DH, Tyryshkin AM, Swapna GVT, Raanan H, Montelione GT, Nanda V, Falkowski PG.

J Am Chem Soc. 2018 Sep 12;140(36):11210-11213. doi: 10.1021/jacs.8b07553. Epub 2018 Aug 29.

PMID:
30141918
10.

A toolbox of immunoprecipitation-grade monoclonal antibodies to human transcription factors.

Venkataraman A, Yang K, Irizarry J, Mackiewicz M, Mita P, Kuang Z, Xue L, Ghosh D, Liu S, Ramos P, Hu S, Bayron Kain D, Keegan S, Saul R, Colantonio S, Zhang H, Behn FP, Song G, Albino E, Asencio L, Ramos L, Lugo L, Morell G, Rivera J, Ruiz K, Almodovar R, Nazario L, Murphy K, Vargas I, Rivera-Pacheco ZA, Rosa C, Vargas M, McDade J, Clark BS, Yoo S, Khambadkone SG, de Melo J, Stevanovic M, Jiang L, Li Y, Yap WY, Jones B, Tandon A, Campbell E, Montelione GT, Anderson S, Myers RM, Boeke JD, Fenyö D, Whiteley G, Bader JS, Pino I, Eichinger DJ, Zhu H, Blackshaw S.

Nat Methods. 2018 May;15(5):330-338. doi: 10.1038/nmeth.4632. Epub 2018 Mar 19.

11.

Inhibitor Bound Dengue NS2B-NS3pro Reveals Multiple Dynamic Binding Modes.

Gibbs AC, Steele R, Liu G, Tounge BA, Montelione GT.

Biochemistry. 2018 Mar 13;57(10):1591-1602. doi: 10.1021/acs.biochem.7b01127. Epub 2018 Feb 21.

PMID:
29447443
12.

Effect of mitochondrial uncouplers niclosamide ethanolamine (NEN) and oxyclozanide on hepatic metastasis of colon cancer.

Alasadi A, Chen M, Swapna GVT, Tao H, Guo J, Collantes J, Fadhil N, Montelione GT, Jin S.

Cell Death Dis. 2018 Feb 13;9(2):215. doi: 10.1038/s41419-017-0092-6.

13.

Backbone and Ile-δ1, Leu, Val methyl 1H, 15N, and 13C, chemical shift assignments for Rhizopus chinensis lipase.

Zhang M, Yu XW, Swapna GVT, Liu G, Xiao R, Xu Y, Montelione GT.

Biomol NMR Assign. 2018 Apr;12(1):63-68. doi: 10.1007/s12104-017-9781-4. Epub 2017 Sep 19.

PMID:
28929427
14.

13 C metabolic flux profiling of Pichia pastoris grown in aerobic batch cultures on glucose revealed high relative anabolic use of TCA cycle and limited incorporation of provided precursors of branched-chain amino acids.

Zhang M, Yu XW, Xu Y, Jouhten P, Swapna GVT, Glaser RW, Hunt JF, Montelione GT, Maaheimo H, Szyperski T.

FEBS J. 2017 Sep;284(18):3100-3113. doi: 10.1111/febs.14180. Epub 2017 Aug 7.

15.

NMR characterization of HtpG, the E. coli Hsp90, using sparse labeling with 13C-methyl alanine.

Pederson K, Chalmers GR, Gao Q, Elnatan D, Ramelot TA, Ma LC, Montelione GT, Kennedy MA, Agard DA, Prestegard JH.

J Biomol NMR. 2017 Jul;68(3):225-236. doi: 10.1007/s10858-017-0123-8. Epub 2017 Jun 26.

16.

Multiple helical conformations of the helix-turn-helix region revealed by NOE-restrained MD simulations of tryptophan aporepressor, TrpR.

Harish B, Swapna GV, Kornhaber GJ, Montelione GT, Carey J.

Proteins. 2017 Apr;85(4):731-740. doi: 10.1002/prot.25252. Epub 2017 Feb 22.

17.

Principles for designing proteins with cavities formed by curved β sheets.

Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao R, Sankaran B, Zwart PH, Montelione GT, Baker D.

Science. 2017 Jan 13;355(6321):201-206. doi: 10.1126/science.aah7389.

18.

X-ray crystal structure of the N-terminal region of Moloney murine leukemia virus integrase and its implications for viral DNA recognition.

Guan R, Aiyer S, Cote ML, Xiao R, Jiang M, Acton TB, Roth MJ, Montelione GT.

Proteins. 2017 Apr;85(4):647-656. doi: 10.1002/prot.25245. Epub 2017 Feb 3.

19.

Structural/Functional Properties of Human NFU1, an Intermediate [4Fe-4S] Carrier in Human Mitochondrial Iron-Sulfur Cluster Biogenesis.

Cai K, Liu G, Frederick RO, Xiao R, Montelione GT, Markley JL.

Structure. 2016 Dec 6;24(12):2080-2091. doi: 10.1016/j.str.2016.08.020. Epub 2016 Nov 3.

20.

Aromatic claw: A new fold with high aromatic content that evades structural prediction.

Sachleben JR, Adhikari AN, Gawlak G, Hoey RJ, Liu G, Joachimiak A, Montelione GT, Sosnick TR, Koide S.

Protein Sci. 2017 Feb;26(2):208-217. doi: 10.1002/pro.3069. Epub 2016 Nov 10.

21.

A Second RNA-Binding Site in the NS1 Protein of Influenza B Virus.

Ma LC, Guan R, Hamilton K, Aramini JM, Mao L, Wang S, Krug RM, Montelione GT.

Structure. 2016 Sep 6;24(9):1562-72. doi: 10.1016/j.str.2016.07.001. Epub 2016 Aug 18.

22.

Efficient production of (2)H, (13)C, (15)N-enriched industrial enzyme Rhizopus chinensis lipase with native disulfide bonds.

Zhang M, Yu XW, Swapna GV, Xiao R, Zheng H, Sha C, Xu Y, Montelione GT.

Microb Cell Fact. 2016 Jul 13;15(1):123. doi: 10.1186/s12934-016-0522-7.

23.

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.

Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J.

Structure. 2016 Apr 5;24(4):502-508. doi: 10.1016/j.str.2016.02.017.

24.

Introduction of a polar core into the de novo designed protein Top7.

Basanta B, Chan KK, Barth P, King T, Sosnick TR, Hinshaw JR, Liu G, Everett JK, Xiao R, Montelione GT, Baker D.

Protein Sci. 2016 Jul;25(7):1299-307. doi: 10.1002/pro.2899. Epub 2016 Mar 7.

25.

The detection and subsequent volume optimization of biological nanocrystals.

Luft JR, Wolfley JR, Franks EC, Lauricella AM, Gualtieri EJ, Snell EH, Xiao R, Everett JK, Montelione GT.

Struct Dyn. 2015 May 15;2(4):041710. doi: 10.1063/1.4921199. eCollection 2015 Jul.

26.

Codon influence on protein expression in E. coli correlates with mRNA levels.

Boël G, Letso R, Neely H, Price WN, Wong KH, Su M, Luff J, Valecha M, Everett JK, Acton TB, Xiao R, Montelione GT, Aalberts DP, Hunt JF.

Nature. 2016 Jan 21;529(7586):358-363. doi: 10.1038/nature16509. Epub 2016 Jan 13.

27.

Precise assembly of complex beta sheet topologies from de novo designed building blocks.

King IC, Gleixner J, Doyle L, Kuzin A, Hunt JF, Xiao R, Montelione GT, Stoddard BL, DiMaio F, Baker D.

Elife. 2015 Dec 9;4. pii: e11012. doi: 10.7554/eLife.11012.

28.

Control over overall shape and size in de novo designed proteins.

Lin YR, Koga N, Tatsumi-Koga R, Liu G, Clouser AF, Montelione GT, Baker D.

Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):E5478-85. doi: 10.1073/pnas.1509508112. Epub 2015 Sep 22.

29.

A community resource of experimental data for NMR / X-ray crystal structure pairs.

Everett JK, Tejero R, Murthy SB, Acton TB, Aramini JM, Baran MC, Benach J, Cort JR, Eletsky A, Forouhar F, Guan R, Kuzin AP, Lee HW, Liu G, Mani R, Mao B, Mills JL, Montelione AF, Pederson K, Powers R, Ramelot T, Rossi P, Seetharaman J, Snyder D, Swapna GV, Vorobiev SM, Wu Y, Xiao R, Yang Y, Arrowsmith CH, Hunt JF, Kennedy MA, Prestegard JH, Szyperski T, Tong L, Montelione GT.

Protein Sci. 2016 Jan;25(1):30-45. doi: 10.1002/pro.2774. Epub 2015 Sep 22. Review.

30.

The RAS-Binding Domain of Human BRAF Protein Serine/Threonine Kinase Exhibits Allosteric Conformational Changes upon Binding HRAS.

Aramini JM, Vorobiev SM, Tuberty LM, Janjua H, Campbell ET, Seetharaman J, Su M, Huang YJ, Acton TB, Xiao R, Tong L, Montelione GT.

Structure. 2015 Aug 4;23(8):1382-1393. doi: 10.1016/j.str.2015.06.003. Epub 2015 Jul 9.

31.

Protein structure determination by combining sparse NMR data with evolutionary couplings.

Tang Y, Huang YJ, Hopf TA, Sander C, Marks DS, Montelione GT.

Nat Methods. 2015 Aug;12(8):751-4. doi: 10.1038/nmeth.3455. Epub 2015 Jun 29.

32.

Aspirin's Active Metabolite Salicylic Acid Targets High Mobility Group Box 1 to Modulate Inflammatory Responses.

Choi HW, Tian M, Song F, Venereau E, Preti A, Park SW, Hamilton K, Swapna GV, Manohar M, Moreau M, Agresti A, Gorzanelli A, De Marchis F, Wang H, Antonyak M, Micikas RJ, Gentile DR, Cerione RA, Schroeder FC, Montelione GT, Bianchi ME, Klessig DF.

Mol Med. 2015 Jun 18;21:526-35. doi: 10.2119/molmed.2015.00148.

33.

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.

Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD.

Structure. 2015 Jul 7;23(7):1156-67. doi: 10.1016/j.str.2015.05.013. Epub 2015 Jun 18.

34.

Guiding automated NMR structure determination using a global optimization metric, the NMR DP score.

Huang YJ, Mao B, Xu F, Montelione GT.

J Biomol NMR. 2015 Aug;62(4):439-51. doi: 10.1007/s10858-015-9955-2. Epub 2015 Jun 17.

35.

The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013.

Rosato A, Vranken W, Fogh RH, Ragan TJ, Tejero R, Pederson K, Lee HW, Prestegard JH, Yee A, Wu B, Lemak A, Houliston S, Arrowsmith CH, Kennedy M, Acton TB, Xiao R, Liu G, Montelione GT, Vuister GW.

J Biomol NMR. 2015 Aug;62(4):413-24. doi: 10.1007/s10858-015-9953-4. Epub 2015 Jun 14.

36.

NMR Exchange Format: a unified and open standard for representation of NMR restraint data.

Gutmanas A, Adams PD, Bardiaux B, Berman HM, Case DA, Fogh RH, Güntert P, Hendrickx PM, Herrmann T, Kleywegt GJ, Kobayashi N, Lange OF, Markley JL, Montelione GT, Nilges M, Ragan TJ, Schwieters CD, Tejero R, Ulrich EL, Velankar S, Vranken WF, Wedell JR, Westbrook J, Wishart DS, Vuister GW.

Nat Struct Mol Biol. 2015 Jun;22(6):433-4. doi: 10.1038/nsmb.3041. No abstract available.

37.

Analysis of the structural quality of the CASD-NMR 2013 entries.

Ragan TJ, Fogh RH, Tejero R, Vranken W, Montelione GT, Rosato A, Vuister GW.

J Biomol NMR. 2015 Aug;62(4):527-40. doi: 10.1007/s10858-015-9949-0. Epub 2015 Jun 3.

38.

Structural and sequencing analysis of local target DNA recognition by MLV integrase.

Aiyer S, Rossi P, Malani N, Schneider WM, Chandar A, Bushman FD, Montelione GT, Roth MJ.

Nucleic Acids Res. 2015 Jun 23;43(11):5647-63. doi: 10.1093/nar/gkv410. Epub 2015 May 12.

39.

A general computational approach for repeat protein design.

Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D.

J Mol Biol. 2015 Jan 30;427(2):563-75. doi: 10.1016/j.jmb.2014.11.005. Epub 2014 Nov 14.

40.

A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta.

Rossi P, Shi L, Liu G, Barbieri CM, Lee HW, Grant TD, Luft JR, Xiao R, Acton TB, Snell EH, Montelione GT, Baker D, Lange OF, Sgourakis NG.

Proteins. 2015 Feb;83(2):309-17. doi: 10.1002/prot.24719. Epub 2014 Dec 19.

41.

Solution structure of a C-terminal fragment (175-257) of CV_0373 protein from Chromobacterium violaceum adopts a winged helix-turn-helix (wHTH) fold.

Yang Y, Ramelot TA, Lee HW, Xiao R, Everett JK, Montelione GT, Prestegard JH, Kennedy MA.

J Biomol NMR. 2014 Nov;60(2-3):197-202. doi: 10.1007/s10858-014-9860-0. Epub 2014 Oct 1. No abstract available.

42.

Solution structure of the free Zα domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain.

Yang Y, Ramelot TA, Lee HW, Xiao R, Everett JK, Montelione GT, Prestegard JH, Kennedy MA.

J Biomol NMR. 2014 Nov;60(2-3):189-95. doi: 10.1007/s10858-014-9858-7. Epub 2014 Aug 31. No abstract available.

43.

Structure-guided functional characterization of enediyne self-sacrifice resistance proteins, CalU16 and CalU19.

Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN Jr, Thorson JS.

ACS Chem Biol. 2014 Oct 17;9(10):2347-58. doi: 10.1021/cb500327m. Epub 2014 Aug 13.

44.

Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO.

Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR.

PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787. eCollection 2014.

45.

Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the Human Cancer Protein Interaction Network.

Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T.

J Struct Funct Genomics. 2014 Dec;15(4):209-14. doi: 10.1007/s10969-014-9185-y. Epub 2014 Jul 3.

46.

Comparing chemistry to outcome: the development of a chemical distance metric, coupled with clustering and hierarchal visualization applied to macromolecular crystallography.

Bruno AE, Ruby AM, Luft JR, Grant TD, Seetharaman J, Montelione GT, Hunt JF, Snell EH.

PLoS One. 2014 Jun 27;9(6):e100782. doi: 10.1371/journal.pone.0100782. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e105260.

47.

Solution NMR structures of homeodomains from human proteins ALX4, ZHX1, and CASP8AP2 contribute to the structural coverage of the Human Cancer Protein Interaction Network.

Xu X, Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T.

J Struct Funct Genomics. 2014 Dec;15(4):201-7. doi: 10.1007/s10969-014-9184-z. Epub 2014 Jun 19.

48.

Spatially selective heteronuclear multiple-quantum coherence spectroscopy for biomolecular NMR studies.

Sathyamoorthy B, Parish DM, Montelione GT, Xiao R, Szyperski T.

Chemphyschem. 2014 Jun 23;15(9):1872-9. doi: 10.1002/cphc.201301232. Epub 2014 Apr 30.

49.

Polypeptide backbone, C(β) and methyl group resonance assignments of the 24 kDa plectin repeat domain 6 from human protein plectin.

Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T.

Biomol NMR Assign. 2015 Apr;9(1):135-138. doi: 10.1007/s12104-014-9559-x. Epub 2014 Apr 11.

50.

Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction.

Aiyer S, Swapna GV, Malani N, Aramini JM, Schneider WM, Plumb MR, Ghanem M, Larue RC, Sharma A, Studamire B, Kvaratskhelia M, Bushman FD, Montelione GT, Roth MJ.

Nucleic Acids Res. 2014 May;42(9):5917-28. doi: 10.1093/nar/gku175. Epub 2014 Mar 12.

Supplemental Content

Loading ...
Support Center