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Items: 23

1.

Diversity of cytosine methylation across the fungal tree of life.

Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ.

Nat Ecol Evol. 2019 Mar;3(3):479-490. doi: 10.1038/s41559-019-0810-9. Epub 2019 Feb 18.

PMID:
30778188
2.

Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales).

Urquhart AS, Mondo SJ, Mäkelä MR, Hane JK, Wiebenga A, He G, Mihaltcheva S, Pangilinan J, Lipzen A, Barry K, de Vries RP, Grigoriev IV, Idnurm A.

Front Microbiol. 2018 Dec 13;9:3058. doi: 10.3389/fmicb.2018.03058. eCollection 2018.

3.

The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi.

Aguilar-Pontes MV, Brandl J, McDonnell E, Strasser K, Nguyen TTM, Riley R, Mondo S, Salamov A, Nybo JL, Vesth TC, Grigoriev IV, Andersen MR, Tsang A, de Vries RP.

Stud Mycol. 2018 Sep;91:61-78. doi: 10.1016/j.simyco.2018.10.001. Epub 2018 Oct 7.

4.

Biology of Fungi and Their Bacterial Endosymbionts.

Pawlowska TE, Gaspar ML, Lastovetsky OA, Mondo SJ, Real-Ramirez I, Shakya E, Bonfante P.

Annu Rev Phytopathol. 2018 Aug 25;56:289-309. doi: 10.1146/annurev-phyto-080417-045914.

PMID:
30149793
5.

Distribution and population structure of endobacteria in arbuscular mycorrhizal fungi at North Atlantic dunes.

Lastovetsky OA, Ahn E, Mondo SJ, Toomer KH, Zhang A, Johnson LM, Pawlowska TE.

ISME J. 2018 Dec;12(12):3001-3013. doi: 10.1038/s41396-018-0246-2. Epub 2018 Aug 10.

PMID:
30097664
6.

Fungal Epigenomics: Detection and Analysis.

Mondo SJ, Kuo RC, Singan VR.

Methods Mol Biol. 2018;1775:155-170. doi: 10.1007/978-1-4939-7804-5_14.

PMID:
29876817
7.

Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina.

Kijpornyongpan T, Mondo SJ, Barry K, Sandor L, Lee J, Lipzen A, Pangilinan J, LaButti K, Hainaut M, Henrissat B, Grigoriev IV, Spatafora JW, Aime MC.

Mol Biol Evol. 2018 Aug 1;35(8):1840-1854. doi: 10.1093/molbev/msy072.

PMID:
29771364
8.

Phylogenetic and Phylogenomic Definition of Rhizopus Species.

Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, de Hoog GS, Smith ME, Heitman J, Vilgalys R, Stajich JE.

G3 (Bethesda). 2018 May 31;8(6):2007-2018. doi: 10.1534/g3.118.200235.

9.

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides.

Coradetti ST, Pinel D, Geiselman GM, Ito M, Mondo SJ, Reilly MC, Cheng YF, Bauer S, Grigoriev IV, Gladden JM, Simmons BA, Brem RB, Arkin AP, Skerker JM.

Elife. 2018 Mar 9;7. pii: e32110. doi: 10.7554/eLife.32110.

10.

Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.

Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR.

Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115. Epub 2018 Jan 9.

11.

Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.

Mondo SJ, Lastovetsky OA, Gaspar ML, Schwardt NH, Barber CC, Riley R, Sun H, Grigoriev IV, Pawlowska TE.

Nat Commun. 2017 Nov 29;8(1):1843. doi: 10.1038/s41467-017-02052-8.

12.

Phylogenetics and Phylogenomics of Rust Fungi.

Aime MC, McTaggart AR, Mondo SJ, Duplessis S.

Adv Genet. 2017;100:267-307. doi: 10.1016/bs.adgen.2017.09.011. Epub 2017 Oct 26.

PMID:
29153402
13.

A parts list for fungal cellulosomes revealed by comparative genomics.

Haitjema CH, Gilmore SP, Henske JK, Solomon KV, de Groot R, Kuo A, Mondo SJ, Salamov AA, LaButti K, Zhao Z, Chiniquy J, Barry K, Brewer HM, Purvine SO, Wright AT, Hainaut M, Boxma B, van Alen T, Hackstein JHP, Henrissat B, Baker SE, Grigoriev IV, O'Malley MA.

Nat Microbiol. 2017 May 30;2:17087. doi: 10.1038/nmicrobiol.2017.87.

PMID:
28555641
14.

Widespread adenine N6-methylation of active genes in fungi.

Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV.

Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8.

15.

Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria.

Lastovetsky OA, Gaspar ML, Mondo SJ, LaButti KM, Sandor L, Grigoriev IV, Henry SA, Pawlowska TE.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15102-15107. doi: 10.1073/pnas.1615148113. Epub 2016 Dec 12.

16.

Erratum for Walker et al., Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin.

Walker AK, Frasz SL, Seifert KA, Miller JD, Mondo SJ, LaButti K, Lipzen A, Dockter RB, Kennedy MC, Grigoriev IV, Spatafora JW.

Genome Announc. 2016 May 26;4(3). pii: e00510-16. doi: 10.1128/genomeA.00510-16. No abstract available.

17.

Nondegenerative Evolution in Ancient Heritable Bacterial Endosymbionts of Fungi.

Mondo SJ, Salvioli A, Bonfante P, Morton JB, Pawlowska TE.

Mol Biol Evol. 2016 Sep;33(9):2216-31. doi: 10.1093/molbev/msw086. Epub 2016 Apr 28.

18.

Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin.

Walker AK, Frasz SL, Seifert KA, Miller JD, Mondo SJ, LaButti K, Lipzen A, Dockter RB, Kennedy MC, Grigoriev IV, Spatafora JW.

Genome Announc. 2016 Feb 25;4(1). pii: e01768-15. doi: 10.1128/genomeA.01768-15. Erratum in: Genome Announc. 2016;4(3). pii: e00510-16. doi: 10.1128/genomeA.00510-16.

19.

Molecular evolution patterns reveal life history features of mycoplasma-related endobacteria associated with arbuscular mycorrhizal fungi.

Toomer KH, Chen X, Naito M, Mondo SJ, den Bakker HC, VanKuren NW, Lekberg Y, Morton JB, Pawlowska TE.

Mol Ecol. 2015 Jul;24(13):3485-500. doi: 10.1111/mec.13250. Epub 2015 Jun 19.

PMID:
26011293
20.

Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi.

Desirò A, Salvioli A, Ngonkeu EL, Mondo SJ, Epis S, Faccio A, Kaech A, Pawlowska TE, Bonfante P.

ISME J. 2014 Feb;8(2):257-70. doi: 10.1038/ismej.2013.151. Epub 2013 Sep 5.

21.

Evolutionary stability in a 400-million-year-old heritable facultative mutualism.

Mondo SJ, Toomer KH, Morton JB, Lekberg Y, Pawlowska TE.

Evolution. 2012 Aug;66(8):2564-76. doi: 10.1111/j.1558-5646.2012.01611.x. Epub 2012 Mar 27.

PMID:
22834753
22.

Medicago truncatula Vapyrin is a novel protein required for arbuscular mycorrhizal symbiosis.

Pumplin N, Mondo SJ, Topp S, Starker CG, Gantt JS, Harrison MJ.

Plant J. 2010 Feb 1;61(3):482-94. doi: 10.1111/j.1365-313X.2009.04072.x. Epub 2009 Nov 14.

23.

Monophyly of nodA and nifH genes across Texan and Costa Rican populations of Cupriavidus nodule symbionts.

Andam CP, Mondo SJ, Parker MA.

Appl Environ Microbiol. 2007 Jul;73(14):4686-90. Epub 2007 May 25.

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