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Items: 24

1.

MicroRNA-16 feedback loop with p53 and Wip1 can regulate cell fate determination between apoptosis and senescence in DNA damage response.

Issler MVC, Mombach JCM.

PLoS One. 2017 Oct 2;12(10):e0185794. doi: 10.1371/journal.pone.0185794. eCollection 2017.

2.

The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data.

Fontoura CA, Castellani G, Mombach JC.

Comput Biol Med. 2016 Nov 1;78:76-80. doi: 10.1016/j.compbiomed.2016.09.010. Epub 2016 Sep 15.

3.

A simple stochastic model for the feedback circuit between p16INK4a and p53 mediated by p38MAPK: implications for senescence and apoptosis.

de Oliveira LR, Mombach JC, Castellani G.

Mol Biosyst. 2015 Nov;11(11):2955-63. doi: 10.1039/c5mb00230c. Epub 2015 Aug 17.

PMID:
26281034
4.

A Model for p38MAPK-Induced Astrocyte Senescence.

Mombach JC, Vendrusculo B, Bugs CA.

PLoS One. 2015 May 8;10(5):e0125217. doi: 10.1371/journal.pone.0125217. eCollection 2015.

5.

Modelling the onset of senescence at the G1/S cell cycle checkpoint.

Mombach JC, Bugs CA, Chaouiya C.

BMC Genomics. 2014;15 Suppl 7:S7. doi: 10.1186/1471-2164-15-S7-S7. Epub 2014 Oct 27.

6.

Induced genome maintenance pathways in pre-cancer tissues describe an anti-cancer barrier in tumor development.

Simão ÉM, Sinigaglia M, Bugs CA, Castro MA, Librelotto GR, Alves R, Mombach JC.

Mol Biosyst. 2012 Nov;8(11):3003-9. doi: 10.1039/c2mb25242b.

PMID:
22955060
7.

A method to identify important dynamical states in Boolean models of regulatory networks: application to regulation of stomata closure by ABA in A. thaliana.

Bugs CA, Librelotto GR, Mombach JC.

BMC Genomics. 2011 Dec 22;12 Suppl 4:S10. doi: 10.1186/1471-2164-12-S4-S10. Epub 2011 Dec 22.

8.

Can Nep1-like proteins form oligomers?

Cechin AL, Sinigaglia M, Mombach JC, Echeverrigaray S, Lemke N, Cabrera OG, Pereira GA, Javier Medrano F.

Plant Signal Behav. 2008 Oct;3(10):906-7.

9.

ViaComplex: software for landscape analysis of gene expression networks in genomic context.

Castro MA, Filho JL, Dalmolin RJ, Sinigaglia M, Moreira JC, Mombach JC, de Almeida RM.

Bioinformatics. 2009 Jun 1;25(11):1468-9. doi: 10.1093/bioinformatics/btp246. Epub 2009 Apr 15.

PMID:
19369498
10.

Evolutionary origins of human apoptosis and genome-stability gene networks.

Castro MA, Dalmolin RJ, Moreira JC, Mombach JC, de Almeida RM.

Nucleic Acids Res. 2008 Nov;36(19):6269-83. doi: 10.1093/nar/gkn636. Epub 2008 Oct 2.

11.

Cupin: a candidate molecular structure for the Nep1-like protein family.

Cechin AL, Sinigaglia M, Lemke N, Echeverrigaray S, Cabrera OG, Pereira GA, Mombach JC.

BMC Plant Biol. 2008 Apr 30;8:50. doi: 10.1186/1471-2229-8-50.

12.

On the absence of mutations in nucleotide excision repair genes in sporadic solid tumors.

Mombach JC, Castro MA, Moreira JC, de Almeida RM.

Genet Mol Res. 2008 Feb 19;7(1):152-60.

PMID:
18393219
13.

Impaired expression of NER gene network in sporadic solid tumors.

Castro MA, Mombach JC, de Almeida RM, Moreira JC.

Nucleic Acids Res. 2007;35(6):1859-67. Epub 2007 Mar 1.

14.

Exploring molecular networks using MONET ontology.

Silva JP, Lemke N, Mombach JC, Souza JG, Sinigaglia M, Vieira R.

Genet Mol Res. 2006 Mar 31;5(1):182-92.

15.

Modelling, property verification and behavioural equivalence of lactose operon regulation.

Pinto MC, Foss L, Mombach JC, Ribeiro L.

Comput Biol Med. 2007 Feb;37(2):134-48. Epub 2006 Apr 18.

PMID:
16620804
16.

An integrated model for cellular analysis.

Battistella E, Souza JG, Barcellos CK, Lemke N, Mombach JC.

Genet Mol Res. 2005 Sep 30;4(3):506-13.

PMID:
16342035
17.
18.

Bioinformatics analysis of mycoplasma metabolism: important enzymes, metabolic similarities, and redundancy.

Mombach JC, Lemke N, da Silva NM, Ferreira RA, Isaia E, Barcellos CK.

Comput Biol Med. 2006 May;36(5):542-52.

PMID:
15913593
19.

Essentiality and damage in metabolic networks.

Lemke N, Herédia F, Barcellos CK, Dos Reis AN, Mombach JC.

Bioinformatics. 2004 Jan 1;20(1):115-9.

PMID:
14693817
20.

Single cell motion in aggregates of embryonic cells.

Mombach JC, Glazier JA.

Phys Rev Lett. 1996 Apr 15;76(16):3032-3035. No abstract available.

PMID:
10060853
21.

Grain growth from homogeneous initial conditions: Anomalous grain growth and special scaling states.

Jiang Y, Mombach JC, Glazier JA.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Oct;52(4):R3333-R3336. No abstract available.

PMID:
9963953
22.

Quantitative comparison between differential adhesion models and cell sorting in the presence and absence of fluctuations.

Mombach JC, Glazier JA, Raphael RC, Zajac M.

Phys Rev Lett. 1995 Sep 11;75(11):2244-2247. No abstract available.

PMID:
10059250
23.

Mitosis and growth in biological tissues.

Mombach JC, de Almeida RM, Iglesias JR.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Jul;48(1):598-602. No abstract available.

PMID:
9960624
24.

Two-cell correlations in biological tissues.

Mombach JC, de Almeida RM, Iglesias JR.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 May;47(5):3712-3716. No abstract available.

PMID:
9960427

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