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Items: 1 to 50 of 150

1.

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture.

Melkonian C, Gottstein W, Blasche S, Kim Y, Abel-Kistrup M, Swiegers H, Saerens S, Edwards N, Patil KR, Teusink B, Molenaar D.

Front Microbiol. 2019 Jun 25;10:1347. doi: 10.3389/fmicb.2019.01347. eCollection 2019.

2.

Microbial Communities in Sediments From Four Mildly Acidic Ephemeral Salt Lakes in the Yilgarn Craton (Australia) - Terrestrial Analogs to Ancient Mars.

Aerts JW, van Spanning RJM, Flahaut J, Molenaar D, Bland PA, Genge MJ, Ehrenfreund P, Martins Z.

Front Microbiol. 2019 May 6;10:779. doi: 10.3389/fmicb.2019.00779. eCollection 2019.

3.

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must.

Sirén K, Mak SST, Melkonian C, Carøe C, Swiegers JH, Molenaar D, Fischer U, Gilbert MTP.

Front Microbiol. 2019 Apr 9;10:697. doi: 10.3389/fmicb.2019.00697. eCollection 2019.

4.

Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: implications for in vivo dominance of the vaginal microbiota.

van der Veer C, Hertzberger RY, Bruisten SM, Tytgat HLP, Swanenburg J, de Kat Angelino-Bart A, Schuren F, Molenaar D, Reid G, de Vries H, Kort R.

Microbiome. 2019 Mar 29;7(1):49. doi: 10.1186/s40168-019-0667-9.

5.

A heteroscedastic hidden Markov mixture model for responses and categorized response times.

Molenaar D, Rózsa S, Bolsinova M.

Behav Res Methods. 2019 Apr;51(2):676-696. doi: 10.3758/s13428-019-01229-x.

6.

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength.

Price CE, Branco Dos Santos F, Hesseling A, Uusitalo JJ, Bachmann H, Benavente V, Goel A, Berkhout J, Bruggeman FJ, Marrink SJ, Montalban-Lopez M, de Jong A, Kok J, Molenaar D, Poolman B, Teusink B, Kuipers OP.

BMC Evol Biol. 2019 Jan 10;19(1):15. doi: 10.1186/s12862-018-1331-x.

7.

Nonlinear Indicator-Level Moderation in Latent Variable Models.

Bolsinova M, Molenaar D.

Multivariate Behav Res. 2019 Jan-Feb;54(1):62-84. doi: 10.1080/00273171.2018.1486174. Epub 2018 Dec 4.

PMID:
30513219
8.

Naturally Fermented Milk From Northern Senegal: Bacterial Community Composition and Probiotic Enrichment With Lactobacillus rhamnosus.

Parker M, Zobrist S, Donahue C, Edick C, Mansen K, Hassan Zade Nadjari M, Heerikhuisen M, Sybesma W, Molenaar D, Diallo AM, Milani P, Kort R.

Front Microbiol. 2018 Sep 21;9:2218. doi: 10.3389/fmicb.2018.02218. eCollection 2018.

9.

Modeling Nonlinear Conditional Dependence Between Response Time and Accuracy.

Bolsinova M, Molenaar D.

Front Psychol. 2018 Sep 7;9:1525. doi: 10.3389/fpsyg.2018.01525. eCollection 2018.

10.

Training for translation between disciplines: a philosophy for life and data sciences curricula.

Anton Feenstra K, Abeln S, Westerhuis JA, Brancos Dos Santos F, Molenaar D, Teusink B, Hoefsloot HCJ, Heringa J.

Bioinformatics. 2018 Jul 1;34(13):i4-i12. doi: 10.1093/bioinformatics/bty233.

11.

A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways.

Atashgahi S, Hornung B, van der Waals MJ, da Rocha UN, Hugenholtz F, Nijsse B, Molenaar D, van Spanning R, Stams AJM, Gerritse J, Smidt H.

Sci Rep. 2018 Mar 14;8(1):4490. doi: 10.1038/s41598-018-22617-x.

12.

Response Mixture Modeling: Accounting for Heterogeneity in Item Characteristics across Response Times.

Molenaar D, de Boeck P.

Psychometrika. 2018 Jun;83(2):279-297. doi: 10.1007/s11336-017-9602-9. Epub 2018 Feb 1.

PMID:
29392567
13.

Longitudinal and Cross-sectional Analyses of Lung Function in Toluene Diisocyanate Production Workers.

Wang ML, Storey E, Cassidy LD, Doney B, Conner PR, Collins JJ, Carson M, Molenaar D.

J Occup Environ Med. 2017 Dec;59 Suppl 12:S28-S35. doi: 10.1097/JOM.0000000000001124.

14.

Incidence of Occupational Asthma and Exposure to Toluene Diisocyanate in the United States Toluene Diisocyanate Production Industry.

Collins JJ, Anteau S, Conner PR, Cassidy LD, Doney B, Wang ML, Kurth L, Carson M, Molenaar D, Redlich CA, Storey E.

J Occup Environ Med. 2017 Dec;59 Suppl 12:S22-S27. doi: 10.1097/JOM.0000000000000890.

15.

Medical Monitoring for Occupational Asthma Among Toluene Diisocyanate Production Workers in the United States.

Cassidy LD, Doney B, Wang ML, Kurth L, Conner PR, Collins JJ, Carson M, Molenaar D, Redlich CA, Storey E.

J Occup Environ Med. 2017 Dec;59 Suppl 12:S13-S21. doi: 10.1097/JOM.0000000000001197.

16.

A semi-parametric within-subject mixture approach to the analyses of responses and response times.

Molenaar D, Bolsinova M, Vermunt JK.

Br J Math Stat Psychol. 2018 May;71(2):205-228. doi: 10.1111/bmsp.12117. Epub 2017 Oct 17.

PMID:
29044460
17.

Experimental evolution and the adjustment of metabolic strategies in lactic acid bacteria.

Bachmann H, Molenaar D, Branco Dos Santos F, Teusink B.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S201-S219. doi: 10.1093/femsre/fux024. Review.

PMID:
28633473
18.

A heteroscedastic generalized linear model with a non-normal speed factor for responses and response times.

Molenaar D, Bolsinova M.

Br J Math Stat Psychol. 2017 May;70(2):297-316. doi: 10.1111/bmsp.12087. Epub 2017 Feb 3.

19.

Cognitive and psychometric modelling of responses and response times.

Molenaar D, Visser I.

Br J Math Stat Psychol. 2017 May;70(2):185-186. doi: 10.1111/bmsp.12102. No abstract available.

PMID:
28474766
20.

Conditional Dependence between Response Time and Accuracy: An Overview of its Possible Sources and Directions for Distinguishing between Them.

Bolsinova M, Tijmstra J, Molenaar D, De Boeck P.

Front Psychol. 2017 Feb 16;8:202. doi: 10.3389/fpsyg.2017.00202. eCollection 2017.

21.

Nonhierarchical Flux Regulation Exposes the Fitness Burden Associated with Lactate Production in Synechocystis sp. PCC6803.

Du W, Angermayr SA, Jongbloets JA, Molenaar D, Bachmann H, Hellingwerf KJ, Branco Dos Santos F.

ACS Synth Biol. 2017 Mar 17;6(3):395-401. doi: 10.1021/acssynbio.6b00235. Epub 2016 Dec 12.

PMID:
27936615
22.

Hidden Markov Item Response Theory Models for Responses and Response Times.

Molenaar D, Oberski D, Vermunt J, De Boeck P.

Multivariate Behav Res. 2016 Sep-Oct;51(5):606-626. doi: 10.1080/00273171.2016.1192983. Epub 2016 Aug 11.

PMID:
27712114
23.

Response moderation models for conditional dependence between response time and response accuracy.

Bolsinova M, Tijmstra J, Molenaar D.

Br J Math Stat Psychol. 2017 May;70(2):257-279. doi: 10.1111/bmsp.12076. Epub 2016 Sep 12.

PMID:
27618470
24.

Molecular assessment of bacterial vaginosis by Lactobacillus abundance and species diversity.

Dols JA, Molenaar D, van der Helm JJ, Caspers MP, de Kat Angelino-Bart A, Schuren FH, Speksnijder AG, Westerhoff HV, Richardus JH, Boon ME, Reid G, de Vries HJ, Kort R.

BMC Infect Dis. 2016 Apr 23;16:180. doi: 10.1186/s12879-016-1513-3.

25.

Public goods and metabolic strategies.

Bachmann H, Bruggeman FJ, Molenaar D, Branco Dos Santos F, Teusink B.

Curr Opin Microbiol. 2016 Jun;31:109-115. doi: 10.1016/j.mib.2016.03.007. Epub 2016 Apr 4. Review.

26.

Dependence of Gene-by-Environment Interactions (GxE) on Scaling: Comparing the Use of Sum Scores, Transformed Sum Scores and IRT Scores for the Phenotype in Tests of GxE.

Murray AL, Molenaar D, Johnson W, Krueger RF.

Behav Genet. 2016 Jul;46(4):552-72. doi: 10.1007/s10519-016-9783-5. Epub 2016 Feb 1.

PMID:
26833465
27.

A Bivariate Generalized Linear Item Response Theory Modeling Framework to the Analysis of Responses and Response Times.

Molenaar D, Tuerlinckx F, van der Maas HL.

Multivariate Behav Res. 2015;50(1):56-74. doi: 10.1080/00273171.2014.962684.

PMID:
26609743
28.

When Middle Really Means "Top" or "Bottom": An Analysis of the 16PF5 Using Bock's Nominal Response Model.

Murray AL, Booth T, Molenaar D.

J Pers Assess. 2016;98(3):319-31. doi: 10.1080/00223891.2015.1095197. Epub 2015 Nov 7.

PMID:
26549278
29.

Analysis of Behavioral and Emotional Problems in Children Highlights the Role of Genotype × Environment Interaction.

Molenaar D, Middeldorp C, van Beijsterveldt T, Boomsma DI.

Child Dev. 2015 Nov-Dec;86(6):1999-2016. doi: 10.1111/cdev.12451. Epub 2015 Oct 28.

PMID:
26509842
30.

Evidence for Gender-Dependent Genotype by Environment Interaction in Adult Depression.

Molenaar D, Middeldorp CM, Willemsen G, Ligthart L, Nivard MG, Boomsma DI.

Behav Genet. 2016 Jan;46:59-71. doi: 10.1007/s10519-015-9752-4. Epub 2015 Oct 14.

31.

Amino acid analysis using chromatography-mass spectrometry: An inter platform comparison study.

Krumpochova P, Bruyneel B, Molenaar D, Koukou A, Wuhrer M, Niessen WM, Giera M.

J Pharm Biomed Anal. 2015 Oct 10;114:398-407. doi: 10.1016/j.jpba.2015.06.001. Epub 2015 Jun 5.

PMID:
26115383
32.

Binding proteins enhance specific uptake rate by increasing the substrate-transporter encounter rate.

Bosdriesz E, Magnúsdóttir S, Bruggeman FJ, Teusink B, Molenaar D.

FEBS J. 2015 Jun;282(12):2394-407. doi: 10.1111/febs.13289. Epub 2015 Apr 24.

33.

Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect?

Goel A, Eckhardt TH, Puri P, de Jong A, Branco Dos Santos F, Giera M, Fusetti F, de Vos WM, Kok J, Poolman B, Molenaar D, Kuipers OP, Teusink B.

Mol Microbiol. 2015 Jul;97(1):77-92. doi: 10.1111/mmi.13012. Epub 2015 May 9.

34.

How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization.

Bosdriesz E, Molenaar D, Teusink B, Bruggeman FJ.

FEBS J. 2015 May;282(10):2029-44. doi: 10.1111/febs.13258. Epub 2015 Mar 26.

35.

Improving employee health: evaluation of a worksite lifestyle change program to decrease risk factors for diabetes and cardiovascular disease.

Kramer MK, Molenaar DM, Arena VC, Venditti EM, Meehan RJ, Miller RG, Vanderwood KK, Eaglehouse Y, Kriska AM.

J Occup Environ Med. 2015 Mar;57(3):284-91. doi: 10.1097/JOM.0000000000000350.

36.

Genome-wide transposon mutagenesis indicates that Mycobacterium marinum customizes its virulence mechanisms for survival and replication in different hosts.

Weerdenburg EM, Abdallah AM, Rangkuti F, Abd El Ghany M, Otto TD, Adroub SA, Molenaar D, Ummels R, Ter Veen K, van Stempvoort G, van der Sar AM, Ali S, Langridge GC, Thomson NR, Pain A, Bitter W.

Infect Immun. 2015 May;83(5):1778-88. doi: 10.1128/IAI.03050-14. Epub 2015 Feb 17.

37.

Recruitment for a Diabetes Prevention Program translation effort in a worksite setting.

Taradash J, Kramer M, Molenaar D, Arena V, Vanderwood K, Kriska AM.

Contemp Clin Trials. 2015 Mar;41:204-10. doi: 10.1016/j.cct.2015.01.010. Epub 2015 Jan 26.

38.

A generalized linear factor model approach to the hierarchical framework for responses and response times.

Molenaar D, Tuerlinckx F, van der Maas HL.

Br J Math Stat Psychol. 2015 May;68(2):197-219. doi: 10.1111/bmsp.12042. Epub 2014 Aug 11.

PMID:
25109494
39.

Heteroscedastic Latent Trait Models for Dichotomous Data.

Molenaar D.

Psychometrika. 2015 Sep;80(3):625-44. doi: 10.1007/s11336-014-9406-0. Epub 2014 Aug 1.

PMID:
25080866
40.

Does diisocyanate exposure result in neurotoxicity?

Hughes MA, Carson M, Collins MA, Jolly AT, Molenaar DM, Steffens W, Swaen GM.

Clin Toxicol (Phila). 2014 Apr;52(4):242-57. doi: 10.3109/15563650.2014.898769. Epub 2014 Mar 19. Review.

41.

Testing systematic genotype by environment interactions using item level data.

Molenaar D, Dolan CV.

Behav Genet. 2014 May;44(3):212-31. doi: 10.1007/s10519-014-9647-9. Epub 2014 Feb 22.

PMID:
24563263
42.

Cross-sectional survey of workers exposed to aliphatic diisocyanates using detailed respiratory medical history and questions regarding accidental skin and respiratory exposures.

Hathaway JA, Molenaar DM, Cassidy LD, Feeley TM, Cummings BJ.

J Occup Environ Med. 2014 Jan;56(1):52-7. doi: 10.1097/JOM.0000000000000019.

PMID:
24351890
43.

Availability of public goods shapes the evolution of competing metabolic strategies.

Bachmann H, Fischlechner M, Rabbers I, Barfa N, Branco dos Santos F, Molenaar D, Teusink B.

Proc Natl Acad Sci U S A. 2013 Aug 27;110(35):14302-7. doi: 10.1073/pnas.1308523110. Epub 2013 Aug 12.

44.

Bioinformatics and systems biology: bridging the gap between heterogeneous student backgrounds.

Abeln S, Molenaar D, Feenstra KA, Hoefsloot HC, Teusink B, Heringa J.

Brief Bioinform. 2013 Sep;14(5):589-98. doi: 10.1093/bib/bbt023. Epub 2013 Apr 19.

PMID:
23603092
45.

How biochemical constraints of cellular growth shape evolutionary adaptations in metabolism.

Berkhout J, Bosdriesz E, Nikerel E, Molenaar D, de Ridder D, Teusink B, Bruggeman FJ.

Genetics. 2013 Jun;194(2):505-12. doi: 10.1534/genetics.113.150631. Epub 2013 Mar 27.

46.

Genotype by environment interactions in cognitive ability: a survey of 14 studies from four countries covering four age groups.

Molenaar D, van der Sluis S, Boomsma DI, Haworth CM, Hewitt JK, Martin NG, Plomin R, Wright MJ, Dolan CV.

Behav Genet. 2013 May;43(3):208-19. doi: 10.1007/s10519-012-9581-7. Epub 2013 Feb 10.

47.

Genome instability in Lactobacillus rhamnosus GG.

Sybesma W, Molenaar D, van IJcken W, Venema K, Kort R.

Appl Environ Microbiol. 2013 Apr;79(7):2233-9. doi: 10.1128/AEM.03566-12. Epub 2013 Jan 25.

48.

Vesicle trafficking via the Spitzenkörper during hyphal tip growth in Rhizoctonia solani.

Dijksterhuis J, Molenaar D.

Antonie Van Leeuwenhoek. 2013 Apr;103(4):921-31. doi: 10.1007/s10482-012-9873-1. Epub 2013 Jan 20.

PMID:
23334442
49.

Metabolic shifts: a fitness perspective for microbial cell factories.

Goel A, Wortel MT, Molenaar D, Teusink B.

Biotechnol Lett. 2012 Dec;34(12):2147-60. doi: 10.1007/s10529-012-1038-9. Epub 2012 Aug 31. Review.

50.

The Heteroscedastic Graded Response Model with a Skewed Latent Trait: Testing Statistical and Substantive Hypotheses Related to Skewed Item Category Functions.

Molenaar D, Dolan CV, de Boeck P.

Psychometrika. 2012 Jul;77(3):455-78. doi: 10.1007/s11336-012-9273-5. Epub 2012 May 19.

PMID:
27519776

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