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Items: 38

1.

Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process.

Cornejo OE, Yee MC, Dominguez V, Andrews M, Sockell A, Strandberg E, Livingstone D 3rd, Stack C, Romero A, Umaharan P, Royaert S, Tawari NR, Ng P, Gutierrez O, Phillips W, Mockaitis K, Bustamante CD, Motamayor JC.

Commun Biol. 2018 Oct 16;1:167. doi: 10.1038/s42003-018-0168-6. eCollection 2018.

2.

Corrigendum: A Larger Chocolate Chip-Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps.

Livingstone Iii D, Stack C, Mustiga GM, Rodezno DC, Suarez C, Amores F, Feltus FA, Mockaitis K, Cornejo OE, Motamayor JC.

Front Plant Sci. 2018 Jul 16;9:948. doi: 10.3389/fpls.2018.00948. eCollection 2018.

3.

HCAHPS Scores and Community Factors.

Herrin J, Mockaitis KG, Hines S.

Am J Med Qual. 2018 Sep/Oct;33(5):461-471. doi: 10.1177/1062860618765977. Epub 2018 May 8.

PMID:
29739233
4.

A Larger Chocolate Chip-Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps.

Livingstone D 3rd, Stack C, Mustiga GM, Rodezno DC, Suarez C, Amores F, Feltus FA, Mockaitis K, Cornejo OE, Motamayor JC.

Front Plant Sci. 2017 Dec 5;8:2008. doi: 10.3389/fpls.2017.02008. eCollection 2017. Erratum in: Front Plant Sci. 2018 Jul 16;9:948.

5.

Stilbenoid prenyltransferases define key steps in the diversification of peanut phytoalexins.

Yang T, Fang L, Sanders S, Jayanthi S, Rajan G, Podicheti R, Thallapuranam SK, Mockaitis K, Medina-Bolivar F.

J Biol Chem. 2018 Jan 5;293(1):28-46. doi: 10.1074/jbc.RA117.000564. Epub 2017 Nov 20.

6.

A Specialized Diacylglycerol Acyltransferase Contributes to the Extreme Medium-Chain Fatty Acid Content of Cuphea Seed Oil.

Iskandarov U, Silva JE, Kim HJ, Andersson M, Cahoon RE, Mockaitis K, Cahoon EB.

Plant Physiol. 2017 May;174(1):97-109. doi: 10.1104/pp.16.01894. Epub 2017 Mar 21.

7.

A Stilbenoid-Specific Prenyltransferase Utilizes Dimethylallyl Pyrophosphate from the Plastidic Terpenoid Pathway.

Yang T, Fang L, Rimando AM, Sobolev V, Mockaitis K, Medina-Bolivar F.

Plant Physiol. 2016 Aug;171(4):2483-98. doi: 10.1104/pp.16.00610. Epub 2016 Jun 29.

8.

Correction: The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.

Hématy K, Bellec Y, Podicheti R, Bouteiller N, Anne P, Morineau C, Haslam RP, Beaudoin F, Napier JA, Mockaitis K, Gagliardi D, Vaucheret H, Lange H, Faure JD.

PLoS Genet. 2016 Mar 23;12(3):e1005958. doi: 10.1371/journal.pgen.1005958. eCollection 2016 Mar. No abstract available.

9.

The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.

Hématy K, Bellec Y, Podicheti R, Bouteiller N, Anne P, Morineau C, Haslam RP, Beaudoin F, Napier JA, Mockaitis K, Gagliardi D, Vaucheret H, Lange H, Faure JD.

PLoS Genet. 2016 Feb 1;12(2):e1005817. doi: 10.1371/journal.pgen.1005817. eCollection 2016 Feb. Erratum in: PLoS Genet. 2016 Mar;12(3):e1005958.

10.

Structurally divergent lysophosphatidic acid acyltransferases with high selectivity for saturated medium chain fatty acids from Cuphea seeds.

Kim HJ, Silva JE, Iskandarov U, Andersson M, Cahoon RE, Mockaitis K, Cahoon EB.

Plant J. 2015 Dec;84(5):1021-33. doi: 10.1111/tpj.13063.

11.

Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii.

Tormey D, Colbourne JK, Mockaitis K, Choi JH, Lopez J, Burkhart J, Bradshaw W, Holzapfel C.

BMC Genomics. 2015 Oct 6;16:754. doi: 10.1186/s12864-015-1937-y.

12.

Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.

Kilaru A, Cao X, Dabbs PB, Sung HJ, Rahman MM, Thrower N, Zynda G, Podicheti R, Ibarra-Laclette E, Herrera-Estrella L, Mockaitis K, Ohlrogge JB.

BMC Plant Biol. 2015 Aug 16;15:203. doi: 10.1186/s12870-015-0586-2.

13.

Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids.

Ibarra-Laclette E, Méndez-Bravo A, Pérez-Torres CA, Albert VA, Mockaitis K, Kilaru A, López-Gómez R, Cervantes-Luevano JI, Herrera-Estrella L.

BMC Genomics. 2015 Aug 13;16:599. doi: 10.1186/s12864-015-1775-y.

14.

Making a chocolate chip: development and evaluation of a 6K SNP array for Theobroma cacao.

Livingstone D, Royaert S, Stack C, Mockaitis K, May G, Farmer A, Saski C, Schnell R, Kuhn D, Motamayor JC.

DNA Res. 2015 Aug;22(4):279-91. doi: 10.1093/dnares/dsv009. Epub 2015 Jun 11.

15.

A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.

Westbrook JW, Chhatre VE, Wu LS, Chamala S, Neves LG, Muñoz P, Martínez-García PJ, Neale DB, Kirst M, Mockaitis K, Nelson CD, Peter GF, Davis JM, Echt CS.

G3 (Bethesda). 2015 Jun 11;5(8):1685-94. doi: 10.1534/g3.115.019588.

16.

Toward production of jet fuel functionality in oilseeds: identification of FatB acyl-acyl carrier protein thioesterases and evaluation of combinatorial expression strategies in Camelina seeds.

Kim HJ, Silva JE, Vu HS, Mockaitis K, Nam JW, Cahoon EB.

J Exp Bot. 2015 Jul;66(14):4251-65. doi: 10.1093/jxb/erv225. Epub 2015 May 11.

17.

FEATnotator: A tool for integrated annotation of sequence features and variation, facilitating interpretation in genomics experiments.

Podicheti R, Mockaitis K.

Methods. 2015 Jun;79-80:11-7. doi: 10.1016/j.ymeth.2015.04.028. Epub 2015 Apr 29.

PMID:
25934264
18.

Development and Evaluation of Quality Metrics for Bioinformatics Analysis of Viral Insertion Site Data Generated Using High Throughput Sequencing.

Gao H, Hawkins T, Jasti A, Chen YH, Mockaitis K, Dinauer M, Cornetta K.

Biomedicines. 2014 May 6;2(2):195-210. doi: 10.3390/biomedicines2020195.

19.

Diversity and dynamics of the Drosophila transcriptome.

Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, Eads BD, Miller D, Mockaitis K, Roberts J, Davis CA, Frise E, Hammonds AS, Olson S, Shenker S, Sturgill D, Samsonova AA, Weiszmann R, Robinson G, Hernandez J, Andrews J, Bickel PJ, Carninci P, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Lai EC, Oliver B, Perrimon N, Graveley BR, Celniker SE.

Nature. 2014 Aug 28;512(7515):393-9.

20.

A two-step process for epigenetic inheritance in Arabidopsis.

Blevins T, Pontvianne F, Cocklin R, Podicheti R, Chandrasekhara C, Yerneni S, Braun C, Lee B, Rusch D, Mockaitis K, Tang H, Pikaard CS.

Mol Cell. 2014 Apr 10;54(1):30-42. doi: 10.1016/j.molcel.2014.02.019. Epub 2014 Mar 20.

21.

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.

Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, Puiu D, Salzberg SL, Dejong PJ, Mockaitis K, Main D, Langley CH, Neale DB.

Genetics. 2014 Mar;196(3):891-909. doi: 10.1534/genetics.113.159996.

22.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH.

Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59.

23.

Transcriptome sequencing and phylogenetic analysis of floral and leaf MIKC(C) MADS-box and R2R3 MYB transcription factors from the monocot Iris fulva.

Ballerini ES, Mockaitis K, Arnold ML.

Gene. 2013 Dec 1;531(2):337-46. doi: 10.1016/j.gene.2013.08.067. Epub 2013 Aug 29.

PMID:
23994293
24.

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.

Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC, Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J, Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN.

Genome Biol. 2013 Jun 3;14(6):r53. doi: 10.1186/gb-2013-14-6-r53.

25.

Camelina seed transcriptome: a tool for meal and oil improvement and translational research.

Nguyen HT, Silva JE, Podicheti R, Macrander J, Yang W, Nazarenus TJ, Nam JW, Jaworski JG, Lu C, Scheffler BE, Mockaitis K, Cahoon EB.

Plant Biotechnol J. 2013 Aug;11(6):759-69. doi: 10.1111/pbi.12068. Epub 2013 Apr 3.

26.

Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach.

Cheng C, White BJ, Kamdem C, Mockaitis K, Costantini C, Hahn MW, Besansky NJ.

Genetics. 2012 Apr;190(4):1417-32. doi: 10.1534/genetics.111.137794. Epub 2011 Dec 29.

27.

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes.

Feltus FA, Saski CA, Mockaitis K, Haiminen N, Parida L, Smith Z, Ford J, Staton ME, Ficklin SP, Blackmon BP, Cheng CH, Schnell RJ, Kuhn DN, Motamayor JC.

BMC Genomics. 2011 Jul 27;12:379. doi: 10.1186/1471-2164-12-379.

28.

Identifying viral integration sites using SeqMap 2.0.

Hawkins TB, Dantzer J, Peters B, Dinauer M, Mockaitis K, Mooney S, Cornetta K.

Bioinformatics. 2011 Mar 1;27(5):720-2. doi: 10.1093/bioinformatics/btq722. Epub 2011 Jan 17.

29.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

30.

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences.

Schwartz TS, Tae H, Yang Y, Mockaitis K, Van Hemert JL, Proulx SR, Choi JH, Bronikowski AM.

BMC Genomics. 2010 Dec 7;11:694. doi: 10.1186/1471-2164-11-694.

31.

Auxin receptors and plant development: a new signaling paradigm.

Mockaitis K, Estelle M.

Annu Rev Cell Dev Biol. 2008;24:55-80. doi: 10.1146/annurev.cellbio.23.090506.123214. Review.

PMID:
18631113
32.

AXR4 is required for localization of the auxin influx facilitator AUX1.

Dharmasiri S, Swarup R, Mockaitis K, Dharmasiri N, Singh SK, Kowalchyk M, Marchant A, Mills S, Sandberg G, Bennett MJ, Estelle M.

Science. 2006 May 26;312(5777):1218-20. Epub 2006 May 11.

33.

Integrating transcriptional controls for plant cell expansion.

Mockaitis K, Estelle M.

Genome Biol. 2004;5(11):245. Epub 2004 Oct 28. Review.

34.

AtSGP1, AtSGP2 and MAP4K alpha are nucleolar plant proteins that can complement fission yeast mutants lacking a functional SIN pathway.

Champion A, Jouannic S, Guillon S, Mockaitis K, Krapp A, Picaud A, Simanis V, Kreis M, Henry Y.

J Cell Sci. 2004 Aug 15;117(Pt 18):4265-75. Epub 2004 Aug 3.

35.

Arabidopsis kinome: after the casting.

Champion A, Kreis M, Mockaitis K, Picaud A, Henry Y.

Funct Integr Genomics. 2004 Jul;4(3):163-87. Epub 2004 Jan 22. Review.

PMID:
14740254
36.

Protein phosphorylation in the delivery of and response to auxin signals.

DeLong A, Mockaitis K, Christensen S.

Plant Mol Biol. 2002 Jun-Jul;49(3-4):285-303. Review.

PMID:
12036255
37.
38.

A protein-tyrosine/serine phosphatase encoded by the genome of the cyanobacterium Nostoc commune UTEX 584.

Potts M, Sun H, Mockaitis K, Kennelly PJ, Reed D, Tonks NK.

J Biol Chem. 1993 Apr 15;268(11):7632-5.

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