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Items: 1 to 50 of 87

1.

A versatile image analysis platform for three-dimensional nuclear reconstruction.

Williams JF, Mochrie SGJ, King MC.

Methods. 2019 Mar 15;157:15-27. doi: 10.1016/j.ymeth.2018.10.009. Epub 2018 Oct 22.

PMID:
30359725
2.

Applying Perturbation Expectation-Maximization to Protein Trajectories of Rho GTPases.

Koo PK, Mochrie SGJ.

Methods Mol Biol. 2018;1821:57-70. doi: 10.1007/978-1-4939-8612-5_5.

PMID:
30062405
3.

A new method for post-translationally labeling proteins in live cells for fluorescence imaging and tracking.

Hinrichsen M, Lenz M, Edwards JM, Miller OK, Mochrie SGJ, Swain PS, Schwarz-Linek U, Regan L.

Protein Eng Des Sel. 2017 Dec 1;30(12):771-780. doi: 10.1093/protein/gzx059.

4.

Multiplexed fluctuation-dissipation-theorem calibration of optical tweezers inside living cells.

Yan H, Johnston JF, Cahn SB, King MC, Mochrie SGJ.

Rev Sci Instrum. 2017 Nov;88(11):113112. doi: 10.1063/1.5012782.

PMID:
29195389
5.

Systems-level approach to uncovering diffusive states and their transitions from single-particle trajectories.

Koo PK, Mochrie SG.

Phys Rev E. 2016 Nov;94(5-1):052412. Epub 2016 Nov 28.

PMID:
27967069
6.

Erratum: "Active drift stabilization in three dimensions via image cross-correlation" [Rev. Sci. Instrum. 84, 103705 (2013)].

Koo PK, Setru SU, Mochrie SG.

Rev Sci Instrum. 2016 Aug;87(8):089901. doi: 10.1063/1.4962035. No abstract available.

PMID:
27587185
7.

Improved Determination of Subnuclear Position Enabled by Three-Dimensional Membrane Reconstruction.

Zhao Y, Schreiner SM, Koo PK, Colombi P, King MC, Mochrie SG.

Biophys J. 2016 Jul 12;111(1):19-24. doi: 10.1016/j.bpj.2016.05.036.

8.

Domain morphology, boundaries, and topological defects in biophotonic gyroid nanostructures of butterfly wing scales.

Singer A, Boucheron L, Dietze SH, Jensen KE, Vine D, McNulty I, Dufresne ER, Prum RO, Mochrie SG, Shpyrko OG.

Sci Adv. 2016 Jun 10;2(6):e1600149. doi: 10.1126/sciadv.1600149. eCollection 2016 Jun.

9.

Designed Proteins as Novel Imaging Reagents in Living Escherichia coli.

Pratt SE, Speltz EB, Mochrie SG, Regan L.

Chembiochem. 2016 Sep 2;17(17):1652-7. doi: 10.1002/cbic.201600252. Epub 2016 Jul 26.

PMID:
27304706
10.

Promoting convergence: The integrated graduate program in physical and engineering biology at Yale University, a new model for graduate education.

Noble DB, Mochrie SG, O'Hern CS, Pollard TD, Regan L.

Biochem Mol Biol Educ. 2016 Nov 12;44(6):537-549. doi: 10.1002/bmb.20977. Epub 2016 Jun 13.

11.

Extracting Diffusive States of Rho GTPase in Live Cells: Towards In Vivo Biochemistry.

Koo PK, Weitzman M, Sabanaygam CR, van Golen KL, Mochrie SG.

PLoS Comput Biol. 2015 Oct 29;11(10):e1004297. doi: 10.1371/journal.pcbi.1004297. eCollection 2015 Oct.

12.

Cross-Scale Integrin Regulation Organizes ECM and Tissue Topology.

Jülich D, Cobb G, Melo AM, McMillen P, Lawton AK, Mochrie SG, Rhoades E, Holley SA.

Dev Cell. 2015 Jul 6;34(1):33-44. doi: 10.1016/j.devcel.2015.05.005. Epub 2015 Jun 18.

13.

The tethering of chromatin to the nuclear envelope supports nuclear mechanics.

Schreiner SM, Koo PK, Zhao Y, Mochrie SG, King MC.

Nat Commun. 2015 Jun 15;6:7159. doi: 10.1038/ncomms8159.

14.

Structural Diversity of Arthropod Biophotonic Nanostructures Spans Amphiphilic Phase-Space.

Saranathan V, Seago AE, Sandy A, Narayanan S, Mochrie SG, Dufresne ER, Cao H, Osuji CO, Prum RO.

Nano Lett. 2015 Jun 10;15(6):3735-42. doi: 10.1021/acs.nanolett.5b00201. Epub 2015 May 14.

PMID:
25938382
15.

Condensation transition and forced unravelling of DNA-histone H1 toroids: a multi-state free energy landscape.

Mack AH, Schlingman DJ, Salinas RD, Regan L, Mochrie SG.

J Phys Condens Matter. 2015 Feb 18;27(6):064106. doi: 10.1088/0953-8984/27/6/064106. Epub 2015 Jan 7.

PMID:
25563346
16.

Routes to DNA accessibility: alternative pathways for nucleosome unwinding.

Schlingman DJ, Mack AH, Kamenetska M, Mochrie SGJ, Regan L.

Biophys J. 2014 Jul 15;107(2):384-392. doi: 10.1016/j.bpj.2014.05.042.

17.

Active drift stabilization in three dimensions via image cross-correlation.

Koo PK, Setru SU, Mochrie SG.

Rev Sci Instrum. 2013 Oct;84(10):103705. doi: 10.1063/1.4824197. Erratum in: Rev Sci Instrum. 2016 Aug;87(8):089901.

PMID:
24182117
18.

The molecular yo-yo method: live jump detection improves throughput of single-molecule force spectroscopy for out-of-equilibrium transitions.

Mack AH, Schlingman DJ, Kamenetska M, Collins R, Regan L, Mochrie SG.

Rev Sci Instrum. 2013 Aug;84(8):085119. doi: 10.1063/1.4819026.

PMID:
24007119
19.

Unwinding and rewinding the nucleosome inner turn: force dependence of the kinetic rate constants.

Mochrie SG, Mack AH, Schlingman DJ, Collins R, Kamenetska M, Regan L.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jan;87(1):012710. Epub 2013 Jan 17.

20.

Practical axial optical trapping.

Mack AH, Schlingman DJ, Regan L, Mochrie SG.

Rev Sci Instrum. 2012 Oct;83(10):103106. doi: 10.1063/1.4757862.

21.

Kinetics and thermodynamics of phenotype: unwinding and rewinding the nucleosome.

Mack AH, Schlingman DJ, Ilagan RP, Regan L, Mochrie SG.

J Mol Biol. 2012 Nov 9;423(5):687-701. doi: 10.1016/j.jmb.2012.08.021. Epub 2012 Aug 31.

22.

Structure and optical function of amorphous photonic nanostructures from avian feather barbs: a comparative small angle X-ray scattering (SAXS) analysis of 230 bird species.

Saranathan V, Forster JD, Noh H, Liew SF, Mochrie SG, Cao H, Dufresne ER, Prum RO.

J R Soc Interface. 2012 Oct 7;9(75):2563-80. doi: 10.1098/rsif.2012.0191. Epub 2012 May 9.

23.

Dynamics of colloidal particles in ice.

Spannuth M, Mochrie SG, Peppin SS, Wettlaufer JS.

J Chem Phys. 2011 Dec 14;135(22):224706. doi: 10.1063/1.3665927.

PMID:
22168718
24.

X-ray near-field speckle: implementation and critical analysis.

Lu X, Mochrie SG, Narayanan S, Sandy AR, Sprung M.

J Synchrotron Radiat. 2011 Nov;18(Pt 6):823-34. doi: 10.1107/S0909049511037149. Epub 2011 Oct 5.

25.

Modulating repeat protein stability: the effect of individual helix stability on the collective behavior of the ensemble.

Cortajarena AL, Mochrie SG, Regan L.

Protein Sci. 2011 Jun;20(6):1042-7. doi: 10.1002/pro.638. Epub 2011 May 3.

26.

Particle-scale structure in frozen colloidal suspensions from small-angle x-ray scattering.

Spannuth M, Mochrie SG, Peppin SS, Wettlaufer JS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Feb;83(2 Pt 1):021402. Epub 2011 Feb 28.

PMID:
21405844
27.

Allosteric conformational spread: exact results using a simple transfer matrix method.

Mochrie SG, Mack AH, Regan L.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Sep;82(3 Pt 1):031913. Epub 2010 Sep 23.

PMID:
21230114
28.

A new method for the covalent attachment of DNA to a surface for single-molecule studies.

Schlingman DJ, Mack AH, Mochrie SG, Regan L.

Colloids Surf B Biointerfaces. 2011 Mar;83(1):91-5. doi: 10.1016/j.colsurfb.2010.11.002. Epub 2010 Nov 9.

29.

Contribution of double scattering to structural coloration in quasiordered nanostructures of bird feathers.

Noh H, Liew SF, Saranathan V, Prum RO, Mochrie SG, Dufresne ER, Cao H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 1):051923. Epub 2010 May 25.

PMID:
20866277
30.

Double scattering of light from Biophotonic Nanostructures with short-range order.

Noh H, Liew SF, Saranathan V, Prum RO, Mochrie SG, Dufresne ER, Cao H.

Opt Express. 2010 May 24;18(11):11942-8. doi: 10.1364/OE.18.011942.

PMID:
20589056
31.

Structure, function, and self-assembly of single network gyroid (I4132) photonic crystals in butterfly wing scales.

Saranathan V, Osuji CO, Mochrie SG, Noh H, Narayanan S, Sandy A, Dufresne ER, Prum RO.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11676-81. doi: 10.1073/pnas.0909616107. Epub 2010 Jun 14.

32.

Biomimetic isotropic nanostructures for structural coloration.

Forster JD, Noh H, Liew SF, Saranathan V, Schreck CF, Yang L, Park JG, Prum RO, Mochrie SG, O'Hern CS, Cao H, Dufresne ER.

Adv Mater. 2010 Jul 20;22(26-27):2939-44. doi: 10.1002/adma.200903693. No abstract available.

PMID:
20414884
33.

How noniridescent colors are generated by quasi-ordered structures of bird feathers.

Noh H, Liew SF, Saranathan V, Mochrie SG, Prum RO, Dufresne ER, Cao H.

Adv Mater. 2010 Jul 20;22(26-27):2871-80. doi: 10.1002/adma.200903699.

PMID:
20401903
34.

Precision optical trapping via a programmable direct-digital-synthesis-based controller for acousto-optic deflectors.

Mack AH, Trías MK, Mochrie SG.

Rev Sci Instrum. 2009 Jan;80(1):016101. doi: 10.1063/1.3053122.

PMID:
19191462
35.

Mapping the energy landscape of repeat proteins using NMR-detected hydrogen exchange.

Cortajarena AL, Mochrie SG, Regan L.

J Mol Biol. 2008 Jun 6;379(3):617-26. doi: 10.1016/j.jmb.2008.02.046. Epub 2008 Feb 29.

36.

How a liquid becomes a glass both on cooling and on heating.

Lu X, Mochrie SG, Narayanan S, Sandy AR, Sprung M.

Phys Rev Lett. 2008 Feb 1;100(4):045701. Epub 2008 Jan 29.

PMID:
18352302
37.

Small-angle x-ray scattering measurements of the microstructure of liquid helium mixtures adsorbed in aerogel.

Lurio LB, Mulders N, Paetkau M, Chan MH, Mochrie SG.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jul;76(1 Pt 1):011506. Epub 2007 Jul 12.

PMID:
17677449
38.

Crossover from stretched to compressed exponential relaxations in a polymer-based sponge phase.

Falus P, Borthwick MA, Narayanan S, Sandy AR, Mochrie SG.

Phys Rev Lett. 2006 Aug 11;97(6):066102. Epub 2006 Aug 9.

PMID:
17026180
39.

Relationship between structural and stress relaxation in a block-copolymer melt.

Patel AJ, Narayanan S, Sandy A, Mochrie SG, Garetz BA, Watanabe H, Balsara NP.

Phys Rev Lett. 2006 Jun 30;96(25):257801. Epub 2006 Jun 30.

PMID:
16907344
40.

Surface and interfacial dynamics of polymeric bilayer films.

Jiang Z, Kim H, Mochrie SG, Lurio LB, Sinha SK.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jul;74(1 Pt 1):011603. Epub 2006 Jul 19.

PMID:
16907103
41.

Small-angle X-ray scattering using coherent undulator radiation at the ESRF.

Abernathy DL, Grübel G, Brauer S, McNulty I, Stephenson GB, Mochrie SG, Sandy AR, Mulders N, Sutton M.

J Synchrotron Radiat. 1998 Jan 1;5(Pt 1):37-47.

PMID:
16687799
42.

Statistical analysis of X-ray speckle at the NSLS.

Tsui OK, Mochrie SG, Berman LE.

J Synchrotron Radiat. 1998 Jan 1;5(Pt 1):30-6.

PMID:
16687798
43.

Optimizing the signal-to-noise ratio for X-ray photon correlation spectroscopy.

Falus P, Lurio LB, Mochrie SG.

J Synchrotron Radiat. 2006 May;13(Pt 3):253-9. Epub 2006 Apr 13.

PMID:
16645251
44.

A recurring theme in protein engineering: the design, stability and folding of repeat proteins.

Main ER, Lowe AR, Mochrie SG, Jackson SE, Regan L.

Curr Opin Struct Biol. 2005 Aug;15(4):464-71. Review.

PMID:
16043339
45.

A new folding paradigm for repeat proteins.

Kajander T, Cortajarena AL, Main ER, Mochrie SG, Regan L.

J Am Chem Soc. 2005 Jul 27;127(29):10188-90.

PMID:
16028928
46.

Fluctuation dynamics of block copolymer vesicles.

Falus P, Borthwick MA, Mochrie SG.

Phys Rev Lett. 2005 Jan 14;94(1):016105. Epub 2005 Jan 12.

PMID:
15698103
47.

Evolution of particle-scale dynamics in an aging clay suspension.

Bandyopadhyay R, Liang D, Yardimci H, Sessoms DA, Borthwick MA, Mochrie SG, Harden JL, Leheny RL.

Phys Rev Lett. 2004 Nov 26;93(22):228302. Epub 2004 Nov 23.

PMID:
15601124
48.

Symmetric-to-asymmetric transition in triblock copolymer-homopolymer blends.

Falus P, Xiang H, Borthwick MA, Russell TP, Mochrie SG.

Phys Rev Lett. 2004 Oct 1;93(14):145701. Epub 2004 Sep 27.

PMID:
15524811
49.

The fastest global events in RNA folding: electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme.

Das R, Kwok LW, Millett IS, Bai Y, Mills TT, Jacob J, Maskel GS, Seifert S, Mochrie SG, Thiyagarajan P, Doniach S, Pollack L, Herschlag D.

J Mol Biol. 2003 Sep 12;332(2):311-9.

PMID:
12948483
50.

Measuring the nematic order of suspensions of colloidal fd virus by x-ray diffraction and optical birefringence.

Purdy KR, Dogic Z, Fraden S, Rühm A, Lurio L, Mochrie SG.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Mar;67(3 Pt 1):031708. Epub 2003 Mar 28.

PMID:
12689089

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