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Items: 1 to 50 of 351

1.

Characterization of sulfur-compound metabolism underlying wax-ester fermentation in Euglena gracilis.

Yamada K, Nitta T, Atsuji K, Shiroyama M, Inoue K, Higuchi C, Nitta N, Oshiro S, Mochida K, Iwata O, Ohtsu I, Suzuki K.

Sci Rep. 2019 Jan 29;9(1):853. doi: 10.1038/s41598-018-36600-z.

2.

Physiological responses of eelgrass (Zostera marina) to ambient stresses such as herbicide, insufficient light, and high water temperature.

Mochida K, Hano T, Onduka T, Ito K, Yoshida G.

Aquat Toxicol. 2019 Mar;208:20-28. doi: 10.1016/j.aquatox.2018.12.018. Epub 2018 Dec 23.

PMID:
30597291
3.

Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets.

Mochida K, Koda S, Inoue K, Nishii R.

Front Plant Sci. 2018 Nov 29;9:1770. doi: 10.3389/fpls.2018.01770. eCollection 2018. Review.

4.

Computer vision-based phenotyping for improvement of plant productivity: a machine learning perspective.

Mochida K, Koda S, Inoue K, Hirayama T, Tanaka S, Nishii R, Melgani F.

Gigascience. 2019 Jan 1;8(1). doi: 10.1093/gigascience/giy153.

5.

Multiple mandibular static bone depressions attached to the three major salivary glands.

Nishimura S, Osawa K, Tanaka T, Imamura Y, Kokuryo S, Habu M, Jyoujima T, Miyamura Y, Mochida KI, Inoue T, Kito S, Wakasugi-Sato N, Matsumoto-Takeda S, Oda M, Yoshiga D, Kodama M, Sasaguri M, Tominaga K, Yoshioka I, Morimoto Y.

Oral Radiol. 2018 Sep;34(3):277-280. doi: 10.1007/s11282-017-0304-x. Epub 2017 Sep 8.

PMID:
30484032
6.

Benzothiadiazole, a plant defense inducer, negatively regulates sheath blight resistance in Brachypodium distachyon.

Kouzai Y, Noutoshi Y, Inoue K, Shimizu M, Onda Y, Mochida K.

Sci Rep. 2018 Nov 26;8(1):17358. doi: 10.1038/s41598-018-35790-w.

7.

Publisher Correction: Cytoplasmic localization of GRHL3 upon epidermal differentiation triggers cell shape change for epithelial morphogenesis.

Kimura-Yoshida C, Mochida K, Nakaya MA, Mizutani T, Matsuo I.

Nat Commun. 2018 Nov 20;9(1):4959. doi: 10.1038/s41467-018-07486-2.

8.

Identification, Structural Characterization and Gene Expression Analysis of Members of the Nuclear Factor-Y Family in Chickpea (Cicer arietinum L.) under Dehydration and Abscisic Acid Treatments.

Chu HD, Nguyen KH, Watanabe Y, Le DT, Pham TLT, Mochida K, Tran LP.

Int J Mol Sci. 2018 Oct 23;19(11). pii: E3290. doi: 10.3390/ijms19113290.

9.

Cytoplasmic localization of GRHL3 upon epidermal differentiation triggers cell shape change for epithelial morphogenesis.

Kimura-Yoshida C, Mochida K, Nakaya MA, Mizutani T, Matsuo I.

Nat Commun. 2018 Oct 3;9(1):4059. doi: 10.1038/s41467-018-06171-8. Erratum in: Nat Commun. 2018 Nov 20;9(1):4959.

10.

Toxicity of the biocide polycarbamate, used for aquaculture nets, to some marine fish species.

Mochida K, Ito K, Ito M, Hano T, Ohkubo N.

Comp Biochem Physiol C Toxicol Pharmacol. 2018 Dec;214:61-67. doi: 10.1016/j.cbpc.2018.09.001. Epub 2018 Sep 7.

PMID:
30201584
11.

Detection and localization of the thyroid hormone receptor beta mRNA in the immature olfactory receptor neurons of chum salmon.

Kudo H, Eto A, Abe T, Mochida K.

Heliyon. 2018 Aug 22;4(8):e00744. doi: 10.1016/j.heliyon.2018.e00744. eCollection 2018 Aug.

12.
13.

Biased genome editing using the local accumulation of DSB repair molecules system.

Nakade S, Mochida K, Kunii A, Nakamae K, Aida T, Tanaka K, Sakamoto N, Sakuma T, Yamamoto T.

Nat Commun. 2018 Aug 16;9(1):3270. doi: 10.1038/s41467-018-05773-6.

14.

Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells.

Ogita S, Nomura T, Kato Y, Uehara-Yamaguchi Y, Inoue K, Yoshida T, Sakurai T, Shinozaki K, Mochida K.

Sci Rep. 2018 Jul 27;8(1):11347. doi: 10.1038/s41598-018-29645-7.

15.

Mouse Embryo Cryopreservation by High-Osmolality Vitrification.

Mochida K.

Cold Spring Harb Protoc. 2018 May 1;2018(5):pdb.prot094565. doi: 10.1101/pdb.prot094565.

PMID:
29717050
16.

Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum.

Takahagi K, Inoue K, Shimizu M, Uehara-Yamaguchi Y, Onda Y, Mochida K.

Gigascience. 2018 Apr 1;7(4). doi: 10.1093/gigascience/giy020.

17.

The Basic Helix-Loop-Helix Transcription Factor GubHLH3 Positively Regulates Soyasaponin Biosynthetic Genes in Glycyrrhiza uralensis.

Tamura K, Yoshida K, Hiraoka Y, Sakaguchi D, Chikugo A, Mochida K, Kojoma M, Mitsuda N, Saito K, Muranaka T, Seki H.

Plant Cell Physiol. 2018 Apr 1;59(4):778-791. doi: 10.1093/pcp/pcy046. Erratum in: Plant Cell Physiol. 2018 Apr 1;59(4):876.

PMID:
29648666
18.

Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing.

Onda Y, Takahagi K, Shimizu M, Inoue K, Mochida K.

Front Plant Sci. 2018 Mar 23;9:201. doi: 10.3389/fpls.2018.00201. eCollection 2018.

19.

Unexpected heterogeneity derived from Cas9 ribonucleoprotein-introduced clonal cells at the HPRT1 locus.

Sakuma T, Mochida K, Nakade S, Ezure T, Minagawa S, Yamamoto T.

Genes Cells. 2018 Apr;23(4):255-263. doi: 10.1111/gtc.12569. Epub 2018 Feb 9.

20.

MAFB is dispensable for the fetal testis morphogenesis and the maintenance of spermatogenesis in adult mice.

Shawki HH, Oishi H, Usui T, Kitadate Y, Basha WA, Abdellatif AM, Hasegawa K, Okada R, Mochida K, El-Shemy HA, Muratani M, Ogura A, Yoshida S, Takahashi S.

PLoS One. 2018 Jan 11;13(1):e0190800. doi: 10.1371/journal.pone.0190800. eCollection 2018.

21.

A Case of Nivolumab-Induced Severe Mononeuropathy Multiplex and Rhabdomyolysis.

Sakai K, Mochizuki H, Mochida K, Shiomi K, Amano M, Nakazato M.

Case Rep Med. 2017;2017:1093858. doi: 10.1155/2017/1093858. Epub 2017 Oct 22.

22.

Identification of quantitative trait loci associated with the susceptibility of mouse spermatozoa to cryopreservation.

Liu J, Mochida K, Hasegawa A, Inoue K, Ogura A.

J Reprod Dev. 2018 Apr 13;64(2):117-127. doi: 10.1262/jrd.2017-148. Epub 2017 Dec 21.

23.

Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.

Koda S, Onda Y, Matsui H, Takahagi K, Yamaguchi-Uehara Y, Shimizu M, Inoue K, Yoshida T, Sakurai T, Honda H, Eguchi S, Nishii R, Mochida K.

Front Plant Sci. 2017 Nov 28;8:2055. doi: 10.3389/fpls.2017.02055. eCollection 2017.

24.

Nail apparatus melanoma in a Japanese population: a comparative study of surgical procedures and prognoses in a large series of 151 cases.

Ogata D, Uhara H, Tsutsumida A, Yamazaki N, Mochida K, Amano M, Yoshikawa S, Kiyohara Y, Tsuchida T.

Eur J Dermatol. 2017 Dec 1;27(6):620-626. doi: 10.1684/ejd.2017.3133.

PMID:
29165298
25.

Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani, a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon.

Kouzai Y, Kimura M, Watanabe M, Kusunoki K, Osaka D, Suzuki T, Matsui H, Yamamoto M, Ichinose Y, Toyoda K, Matsuura T, Mori IC, Hirayama T, Minami E, Nishizawa Y, Inoue K, Onda Y, Mochida K, Noutoshi Y.

New Phytol. 2018 Jan;217(2):771-783. doi: 10.1111/nph.14849. Epub 2017 Oct 19.

26.

Information Resources for Functional Genomics Studies in Brachypodium distachyon.

Mochida K, Shinozaki K.

Methods Mol Biol. 2018;1667:87-99. doi: 10.1007/978-1-4939-7278-4_8.

PMID:
29039006
27.

Phylogenomics reveals habitat-associated body shape divergence in Oryzias woworae species group (Teleostei: Adrianichthyidae).

Mokodongan DF, Montenegro J, Mochida K, Fujimoto S, Ishikawa A, Kakioka R, Yong L, Mulis, Hadiaty RK, Mandagi IF, Masengi KWA, Wachi N, Hashiguchi Y, Kitano J, Yamahira K.

Mol Phylogenet Evol. 2018 Jan;118:194-203. doi: 10.1016/j.ympev.2017.10.005. Epub 2017 Oct 9.

PMID:
29024751
28.

A Novel Mouse Model of iNKT Cell-deficiency Generated by CRISPR/Cas9 Reveals a Pathogenic Role of iNKT Cells in Metabolic Disease.

Ren Y, Sekine-Kondo E, Shibata R, Kato-Itoh M, Umino A, Yanagida A, Satoh M, Inoue K, Yamaguchi T, Mochida K, Nakae S, Van Kaer L, Iwabuchi K, Nakauchi H, Watarai H.

Sci Rep. 2017 Oct 6;7(1):12765. doi: 10.1038/s41598-017-12475-4.

29.

Efficient and scheduled production of pseudopregnant female mice for embryo transfer by estrous cycle synchronization.

Hasegawa A, Mochida K, Ogonuki N, Hirose M, Tomishima T, Inoue K, Ogura A.

J Reprod Dev. 2017 Dec 15;63(6):539-545. doi: 10.1262/jrd.2017-068. Epub 2017 Aug 20.

30.

RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatments.

Sano N, Kim JS, Onda Y, Nomura T, Mochida K, Okamoto M, Seo M.

Sci Rep. 2017 Aug 14;7(1):8095. doi: 10.1038/s41598-017-08116-5.

31.

Development of a method to assess the ichthyotoxicity of the harmful marine microalgae Karenia spp. using gill cell cultures from red sea bream (Pagrus major ).

Ohkubo N, Tomaru Y, Yamaguchi H, Kitatsuji S, Mochida K.

Fish Physiol Biochem. 2017 Dec;43(6):1603-1612. doi: 10.1007/s10695-017-0396-6. Epub 2017 Jul 11.

PMID:
28695381
32.

Comparative transcriptome analysis of nodules of two Mesorhizobium-chickpea associations with differential symbiotic efficiency under phosphate deficiency.

Nasr Esfahani M, Inoue K, Chu HD, Nguyen KH, Van Ha C, Watanabe Y, Burritt DJ, Herrera-Estrella L, Mochida K, Tran LP.

Plant J. 2017 Sep;91(5):911-926. doi: 10.1111/tpj.13616. Epub 2017 Aug 4.

33.

The Rodent-Specific MicroRNA Cluster within the Sfmbt2 Gene Is Imprinted and Essential for Placental Development.

Inoue K, Hirose M, Inoue H, Hatanaka Y, Honda A, Hasegawa A, Mochida K, Ogura A.

Cell Rep. 2017 May 2;19(5):949-956. doi: 10.1016/j.celrep.2017.04.018.

34.

CRISPR/Cas9-mediated genome editing in wild-derived mice: generation of tamed wild-derived strains by mutation of the a (nonagouti) gene.

Hirose M, Hasegawa A, Mochida K, Matoba S, Hatanaka Y, Inoue K, Goto T, Kaneda H, Yamada I, Furuse T, Abe K, Uenoyama Y, Tsukamura H, Wakana S, Honda A, Ogura A.

Sci Rep. 2017 Feb 14;7:42476. doi: 10.1038/srep42476.

35.

Erratum to: Effect of taurine supplementation on hepatic metabolism and alleviation of cadmium toxicity and bioaccumulation in a marine teleost, red sea bream, Pagrus major.

Hano T, Ito K, Kono K, Ito M, Ohkubo N, Mochida K.

Fish Physiol Biochem. 2017 Jun;43(3):911-912. doi: 10.1007/s10695-016-0323-2. No abstract available.

PMID:
28078494
36.

A hepatic metabolomics-based diagnostic approach to assess lethal toxicity of dithiocarbamate fungicide polycarbamate in three marine fish species.

Hano T, Ohkubo N, Mochida K.

Ecotoxicol Environ Saf. 2017 Apr;138:64-70. doi: 10.1016/j.ecoenv.2016.12.019. Epub 2016 Dec 22.

PMID:
28011422
37.

Photo-induced toxicity and oxidative stress responses in Tigriopus japonicus exposed to nitro-polycyclic aromatic hydrocarbons and artificial light.

Onduka T, Ojima D, Ito K, Mochida K, Ito M, Koyama J, Fujii K.

Chemosphere. 2017 Feb;169:596-603. doi: 10.1016/j.chemosphere.2016.11.113. Epub 2016 Nov 27.

PMID:
27902966
38.

Gene cassette knock-in in mammalian cells and zygotes by enhanced MMEJ.

Aida T, Nakade S, Sakuma T, Izu Y, Oishi A, Mochida K, Ishikubo H, Usami T, Aizawa H, Yamamoto T, Tanaka K.

BMC Genomics. 2016 Nov 28;17(1):979.

39.

Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume.

Mochida K, Sakurai T, Seki H, Yoshida T, Takahagi K, Sawai S, Uchiyama H, Muranaka T, Saito K.

Plant J. 2017 Jan;89(2):181-194. doi: 10.1111/tpj.13385. Epub 2016 Oct 24.

40.

Highly multiplexed CRISPR-Cas9-nuclease and Cas9-nickase vectors for inactivation of hepatitis B virus.

Sakuma T, Masaki K, Abe-Chayama H, Mochida K, Yamamoto T, Chayama K.

Genes Cells. 2016 Nov;21(11):1253-1262. doi: 10.1111/gtc.12437. Epub 2016 Sep 23.

41.

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley.

Takahagi K, Uehara-Yamaguchi Y, Yoshida T, Sakurai T, Shinozaki K, Mochida K, Saisho D.

Sci Rep. 2016 Sep 12;6:33199. doi: 10.1038/srep33199.

42.

Evaluation of bioremediation potential of three benthic annelids in organically polluted marine sediment.

Ito M, Ito K, Ohta K, Hano T, Onduka T, Mochida K, Fujii K.

Chemosphere. 2016 Nov;163:392-399. doi: 10.1016/j.chemosphere.2016.08.046. Epub 2016 Aug 24.

PMID:
27565306
43.

Mycobacterium avium infection induces the resistance of the interferon-γ response in mouse spleen cells at late stages of infection.

Masumi A, Mochida K, Takizawa K, Mizukami T, Kuramitsu M, Tsuruhara M, Mori S, Shibayama K, Yamaguchi K, Hamaguchi I.

Inflamm Regen. 2016 Aug 26;36:21. doi: 10.1186/s41232-016-0024-3. eCollection 2016.

44.

Effect of taurine supplementation on hepatic metabolism and alleviation of cadmium toxicity and bioaccumulation in a marine teleost, red sea bream, Pagrus major.

Hano T, Ito K, Kono K, Ito M, Ohkubo N, Mochida K.

Fish Physiol Biochem. 2017 Feb;43(1):137-152. doi: 10.1007/s10695-016-0274-7. Epub 2016 Aug 17. Erratum in: Fish Physiol Biochem. 2017 Jun;43(3):911-912.

PMID:
27535560
45.

Exploring Genetic Diversity in Plants Using High-Throughput Sequencing Techniques.

Onda Y, Mochida K.

Curr Genomics. 2016 Aug;17(4):358-67. doi: 10.2174/1389202917666160331202742.

46.

Intramolecular Chain Hydrosilylation of Alkynylphenylsilanes Using a Silyl Cation as a Chain Carrier.

Arii H, Nakabayashi K, Mochida K, Kawashima T.

Molecules. 2016 Aug 1;21(8). pii: E999. doi: 10.3390/molecules21080999.

47.

Regioselective and Stereospecific Dehydrogenative Annulation Utilizing Silylium Ion-Activated Alkenes.

Arii H, Yano Y, Nakabayashi K, Yamaguchi S, Yamamura M, Mochida K, Kawashima T.

J Org Chem. 2016 Aug 5;81(15):6314-9. doi: 10.1021/acs.joc.6b00793. Epub 2016 Jul 12.

PMID:
27404297
48.

Transcription of a novel P450 gene varies with some factors (pollutant exposure, temperature, time, and body region) in a marine oligochaete (Thalassodrilides sp.).

Ito M, Ito K, Ohta K, Hano T, Onduka T, Mochida K.

Mar Pollut Bull. 2016 Aug 15;109(1):344-349. doi: 10.1016/j.marpolbul.2016.05.055. Epub 2016 May 29.

PMID:
27251443
49.

Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray.

Utsumi Y, Tanaka M, Kurotani A, Yoshida T, Mochida K, Matsui A, Ishitani M, Sraphet S, Whankaew S, Asvarak T, Narangajavana J, Triwitayakorn K, Sakurai T, Seki M.

J Plant Res. 2016 Jul;129(4):711-726. doi: 10.1007/s10265-016-0828-x. Epub 2016 May 2.

PMID:
27138000
50.

Differences in the ability of two marine annelid species, Thalassodrilides sp. and Perinereis nuntia, to detoxify 1-nitronaphthalene.

Ito K, Ito M, Onduka T, Ohta K, Torii T, Hano T, Mochida K, Ohkubo N, Miura T, Fujii K.

Chemosphere. 2016 May;151:339-44. doi: 10.1016/j.chemosphere.2016.02.026. Epub 2016 Mar 15.

PMID:
26950025

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