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Isolation of OXA-181 Carbapenemase-Producing Escherichia coli and OXA-232 Carbapenemase-Producing Klebsiella pneumoniae from a Pregnant Woman Returning to Japan from India.

Tamura S, Hayakawa K, Miyoshi-Akiyama T, Nakanishi M, Yano T, Shimoya K, Sugiki Y, Mezaki K, Ohmagari N.

Jpn J Infect Dis. 2019 Jul 24;72(4):281-283. doi: 10.7883/yoken.JJID.2018.432. Epub 2019 May 31. No abstract available.


Complete Genome Sequences of Staphylococcus argenteus TWCC 58113, Which Bears Two Plasmids.

Miyoshi-Akiyama T, Ohnishi T, Shinjoh M, Ohara H, Kawai T, Kamimaki I, Mizushima R, Kamada K, Itakura Y, Iguchi S, Uzawa Y, Yoshida A, Kikuchi K, Takemoto N.

Microbiol Resour Announc. 2019 Apr 25;8(17). pii: e01582-18. doi: 10.1128/MRA.01582-18.


Effects of bowel preparation on the human gut microbiome and metabolome.

Nagata N, Tohya M, Fukuda S, Suda W, Nishijima S, Takeuchi F, Ohsugi M, Tsujimoto T, Nakamura T, Shimomura A, Yanagisawa N, Hisada Y, Watanabe K, Imbe K, Akiyama J, Mizokami M, Miyoshi-Akiyama T, Uemura N, Hattori M.

Sci Rep. 2019 Mar 11;9(1):4042. doi: 10.1038/s41598-019-40182-9.


Description of Paraclostridium bifermentans subsp. muricolitidis subsp. nov., emended description of Paraclostridium bifermentans (Sasi Jyothsna et al., 2016), and creation of Paraclostridium bifermentans subsp. bifermentans subsp. nov.

Kutsuna R, Miyoshi-Akiyama T, Mori K, Hayashi M, Tomida J, Morita Y, Tanaka K, Kawamura Y.

Microbiol Immunol. 2019 Jan;63(1):1-10. doi: 10.1111/1348-0421.12663.


Pathogenicity Induced by Invasive Infection of Streptococcus dysgalactiae subsp. equisimilis in a Mouse Model of Diabetes.

Ogura K, Okumura K, Shimizu Y, Kirikae T, Miyoshi-Akiyama T.

Front Microbiol. 2018 Sep 21;9:2128. doi: 10.3389/fmicb.2018.02128. eCollection 2018.


Instability of the 16S rRNA methyltransferase-encoding npmA gene: why have bacterial cells possessing npmA not spread despite their high and broad resistance to aminoglycosides?

Ishizaki Y, Shibuya Y, Hayashi C, Inoue K, Kirikae T, Tada T, Miyoshi-Akiyama T, Igarashi M.

J Antibiot (Tokyo). 2018 Sep;71(9):798-807. doi: 10.1038/s41429-018-0070-y. Epub 2018 Jun 8.


Bacterial EndoMS/NucS acts as a clamp-mediated mismatch endonuclease to prevent asymmetric accumulation of replication errors.

Takemoto N, Numata I, Su'etsugu M, Miyoshi-Akiyama T.

Nucleic Acids Res. 2018 Jul 6;46(12):6152-6165. doi: 10.1093/nar/gky481.


Emergence and Spread of Epidemic Multidrug-Resistant Pseudomonas aeruginosa.

Miyoshi-Akiyama T, Tada T, Ohmagari N, Viet Hung N, Tharavichitkul P, Pokhrel BM, Gniadkowski M, Shimojima M, Kirikae T.

Genome Biol Evol. 2017 Dec 1;9(12):3238-3245. doi: 10.1093/gbe/evx243.


Complete Genome Sequence and Comparative Genomics of a Streptococcus pyogenes emm3 Strain M3-b isolated from a Japanese Patient with Streptococcal Toxic Shock Syndrome.

Ogura K, Watanabe S, Kirikae T, Miyoshi-Akiyama T.

J Genomics. 2017 Jul 1;5:71-74. doi: 10.7150/jgen.20915. eCollection 2017.


Correction for Miyoshi-Akiyama et al., "Comparative Genome Analysis of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Sequence Type 131 Strains from Nepal and Japan".

Miyoshi-Akiyama T, Sherchan JB, Doi Y, Nagamatsu M, Sherchand JB, Tandukar S, Ohmagari N, Kirikae T, Ohara H, Hayakawa K.

mSphere. 2017 May 24;2(3). pii: e00136-17. doi: 10.1128/mSphere.00136-17. eCollection 2017 May-Jun.


Genetic diversity of Mycobacterium tuberculosis isolates from Tochigi prefecture, a local region of Japan.

Mizukoshi F, Miyoshi-Akiyama T, Iwai H, Suzuki T, Kiritani R, Kirikae T, Funatogawa K.

BMC Infect Dis. 2017 May 25;17(1):365. doi: 10.1186/s12879-017-2457-y.


Vibrio cholerae Cholix Toxin-Induced HepG2 Cell Death is Enhanced by Tumor Necrosis Factor-Alpha Through ROS and Intracellular Signal-Regulated Kinases.

Ogura K, Terasaki Y, Miyoshi-Akiyama T, Terasaki M, Moss J, Noda M, Yahiro K.

Toxicol Sci. 2017 Apr 1;156(2):455-468. doi: 10.1093/toxsci/kfx009.


Comparative Genome Analysis of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Sequence Type 131 Strains from Nepal and Japan.

Miyoshi-Akiyama T, Sherchan JB, Doi Y, Nagamatsu M, Sherchand JB, Tandukar S, Ohmagari N, Kirikae T, Ohara H, Hayakawa K.

mSphere. 2016 Oct 26;1(5). pii: e00289-16. eCollection 2016 Sep-Oct. Erratum in: mSphere. 2017 May 24;2(3):.


High rate of multidrug-resistant organism colonization among patients hospitalized overseas highlights the need for preemptive infection control.

Hayakawa K, Mezaki K, Sugiki Y, Nagamatsu M, Miyoshi-Akiyama T, Kirikae T, Kutsuna S, Takeshita N, Yamamoto K, Katanami Y, Ohmagari N.

Am J Infect Control. 2016 Nov 1;44(11):e257-e259. doi: 10.1016/j.ajic.2016.06.040.


Peroxiredoxin 1 Contributes to Host Defenses against Mycobacterium tuberculosis.

Matsumura K, Iwai H, Kato-Miyazawa M, Kirikae F, Zhao J, Yanagawa T, Ishii T, Miyoshi-Akiyama T, Funatogawa K, Kirikae T.

J Immunol. 2016 Oct 15;197(8):3233-3244. Epub 2016 Sep 7.


Multidrug-Resistant Sequence Type 235 Pseudomonas aeruginosa Clinical Isolates Producing IMP-26 with Increased Carbapenem-Hydrolyzing Activities in Vietnam.

Tada T, Nhung PH, Miyoshi-Akiyama T, Shimada K, Tsuchiya M, Phuong DM, Anh NQ, Ohmagari N, Kirikae T.

Antimicrob Agents Chemother. 2016 Oct 21;60(11):6853-6858. doi: 10.1128/AAC.01177-16. Print 2016 Nov.


Proposal of Helicobacter canicola sp. nov., previously identified as Helicobacter cinaedi, isolated from canines.

Kawamura Y, Tomida J, Miyoshi-Akiyama T, Okamoto T, Narita M, Hashimoto K, Cnockaert M, Vandamme P, Morita Y, Sawa T, Akaike T.

Syst Appl Microbiol. 2016 Jul;39(5):307-12. doi: 10.1016/j.syapm.2016.06.004. Epub 2016 Jun 25.


A Mutation in the 16S rRNA Decoding Region Attenuates the Virulence of Mycobacterium tuberculosis.

Watanabe S, Matsumura K, Iwai H, Funatogawa K, Haishima Y, Fukui C, Okumura K, Kato-Miyazawa M, Hashimoto M, Teramoto K, Kirikae F, Miyoshi-Akiyama T, Kirikae T.

Infect Immun. 2016 Jul 21;84(8):2264-2273. doi: 10.1128/IAI.00417-16. Print 2016 Aug.


A Carbapenem-Resistant Pseudomonas aeruginosa Isolate Harboring Two Copies of blaIMP-34 Encoding a Metallo-β-Lactamase.

Tada T, Miyoshi-Akiyama T, Shimada K, Shiroma A, Nakano K, Teruya K, Satou K, Hirano T, Shimojima M, Kirikae T.

PLoS One. 2016 Apr 7;11(4):e0149385. doi: 10.1371/journal.pone.0149385. eCollection 2016.


Emergence of a daptomycin-non-susceptible Enterococcus faecium strain that encodes mutations in DNA repair genes after high-dose daptomycin therapy.

Matono T, Hayakawa K, Hirai R, Tanimura A, Yamamoto K, Fujiya Y, Mawatari M, Kutsuna S, Takeshita N, Mezaki K, Ohmagari N, Miyoshi-Akiyama T.

BMC Res Notes. 2016 Apr 1;9:197. doi: 10.1186/s13104-016-2003-9.


Severe invasive streptococcal infection by Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis.

Watanabe S, Takemoto N, Ogura K, Miyoshi-Akiyama T.

Microbiol Immunol. 2016 Jan;60(1):1-9. doi: 10.1111/1348-0421.12334. Review.


The Forgotten: Identification and Functional Characterization of MHC Class II Molecules H2-Eb2 and RT1-Db2.

Monzón-Casanova E, Rudolf R, Starick L, Müller I, Söllner C, Müller N, Westphal N, Miyoshi-Akiyama T, Uchiyama T, Berberich I, Walter L, Herrmann T.

J Immunol. 2016 Feb 1;196(3):988-99. doi: 10.4049/jimmunol.1403070. Epub 2016 Jan 6.


CASTB (the comprehensive analysis server for the Mycobacterium tuberculosis complex): A publicly accessible web server for epidemiological analyses, drug-resistance prediction and phylogenetic comparison of clinical isolates.

Iwai H, Kato-Miyazawa M, Kirikae T, Miyoshi-Akiyama T.

Tuberculosis (Edinb). 2015 Dec;95(6):843-844. doi: 10.1016/ Epub 2015 Oct 19. No abstract available.


Dissemination of clonal complex 2 Acinetobacter baumannii strains co-producing carbapenemases and 16S rRNA methylase ArmA in Vietnam.

Tada T, Miyoshi-Akiyama T, Shimada K, Nga TT, Thu le TA, Son NT, Ohmagari N, Kirikae T.

BMC Infect Dis. 2015 Oct 15;15:433. doi: 10.1186/s12879-015-1171-x.


Development and evaluation of immunochromatography to detect Gram-negative bacteria producing ArmA 16S rRNA methylase responsible for aminoglycoside resistance.

Oshiro S, Tada T, Kameoka Y, Suzuki K, Ohmagari N, Miyoshi-Akiyama T, Kirikae T.

J Microbiol Methods. 2015 Nov;118:159-63. doi: 10.1016/j.mimet.2015.09.005. Epub 2015 Sep 14.


Molecular epidemiology of multidrug-resistant Acinetobacter baumannii isolates in a university hospital in Nepal reveals the emergence of a novel epidemic clonal lineage.

Shrestha S, Tada T, Miyoshi-Akiyama T, Ohara H, Shimada K, Satou K, Teruya K, Nakano K, Shiroma A, Sherchand JB, Rijal BP, Hirano T, Kirikae T, Pokhrel BM.

Int J Antimicrob Agents. 2015 Nov;46(5):526-31. doi: 10.1016/j.ijantimicag.2015.07.012. Epub 2015 Aug 28.


IMP-51, a novel IMP-type metallo-β-lactamase with increased doripenem- and meropenem-hydrolyzing activities, in a carbapenem-resistant Pseudomonas aeruginosa clinical isolate.

Tada T, Nhung PH, Miyoshi-Akiyama T, Shimada K, Phuong DM, Anh NQ, Ohmagari N, Kirikae T.

Antimicrob Agents Chemother. 2015 Nov;59(11):7090-3. doi: 10.1128/AAC.01611-15. Epub 2015 Aug 17.


A Novel 6'-N-Aminoglycoside Acetyltransferase, AAC(6')-Ial, from a Clinical Isolate of Serratia marcescens.

Tada T, Miyoshi-Akiyama T, Shimada K, Dahal RK, Mishra SK, Ohara H, Kirikae T, Pokhrel BM.

Microb Drug Resist. 2016 Mar;22(2):103-8. doi: 10.1089/mdr.2015.0126. Epub 2015 Aug 13.


Identification of a novel NDM variant, NDM-13, from a multidrug-resistant Escherichia coli clinical isolate in Nepal.

Shrestha B, Tada T, Miyoshi-Akiyama T, Shimada K, Ohara H, Kirikae T, Pokhrel BM.

Antimicrob Agents Chemother. 2015 Sep;59(9):5847-50. doi: 10.1128/AAC.00332-15. Epub 2015 Jul 13.


Evaluation of the Etest method for detecting colistin susceptibility of multidrug-resistant Gram-negative isolates in Vietnam.

Nhung PH, Miyoshi-Akiyama T, Phuong DM, Shimada K, Anh NQ, Binh NG, Thanh do V, Ohmagari N, Kirikae T.

J Infect Chemother. 2015 Aug;21(8):617-9. doi: 10.1016/j.jiac.2015.04.002. Epub 2015 Apr 18.


Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer.

Okumura K, Kato M, Kirikae T, Kayano M, Miyoshi-Akiyama T.

BMC Genomics. 2015 Mar 20;16:218. doi: 10.1186/s12864-015-1368-9.


MicroRNA-155 knockout mice are susceptible to Mycobacterium tuberculosis infection.

Iwai H, Funatogawa K, Matsumura K, Kato-Miyazawa M, Kirikae F, Kiga K, Sasakawa C, Miyoshi-Akiyama T, Kirikae T.

Tuberculosis (Edinb). 2015 May;95(3):246-50. doi: 10.1016/ Epub 2015 Mar 21.


Clinical epidemiology and molecular analysis of extended-spectrum-β-lactamase-producing Escherichia coli in Nepal: characteristics of sequence types 131 and 648.

Sherchan JB, Hayakawa K, Miyoshi-Akiyama T, Ohmagari N, Kirikae T, Nagamatsu M, Tojo M, Ohara H, Sherchand JB, Tandukar S.

Antimicrob Agents Chemother. 2015;59(6):3424-32. doi: 10.1128/AAC.00270-15. Epub 2015 Mar 30.


Genetic diversity of Mycobacterium tuberculosis isolates from foreign-born and Japan-born residents in Tokyo.

Kato-Miyazawa M, Miyoshi-Akiyama T, Kanno Y, Takasaki J, Kirikae T, Kobayashi N.

Clin Microbiol Infect. 2015 Mar;21(3):248.e1-8. doi: 10.1016/j.cmi.2014.09.013. Epub 2014 Oct 13.


Complete annotated genome sequence of Mycobacterium tuberculosis (Zopf) Lehmann and Neumann (ATCC35812) (Kurono).

Miyoshi-Akiyama T, Satou K, Kato M, Shiroma A, Matsumura K, Tamotsu H, Iwai H, Teruya K, Funatogawa K, Hirano T, Kirikae T.

Tuberculosis (Edinb). 2015 Jan;95(1):37-9. doi: 10.1016/ Epub 2014 Oct 31.


Multidrug-resistant Acinetobactor baumannii isolated from a traveler returned from Brunei.

Tojo M, Mawatari M, Hayakawa K, Nagamatsu M, Shimada K, Mezaki K, Sugiki Y, Kuroda E, Takeshita N, Kutsuna S, Fujiya Y, Miyoshi-Akiyama T, Kirikae T, Ohmagari N.

J Infect Chemother. 2015 Mar;21(3):212-4. doi: 10.1016/j.jiac.2014.08.029. Epub 2014 Oct 23.


Identification of a novel 6'-N-aminoglycoside acetyltransferase, AAC(6')-Iak, from a multidrug-resistant clinical isolate of Stenotrophomonas maltophilia.

Tada T, Miyoshi-Akiyama T, Dahal RK, Mishra SK, Shimada K, Ohara H, Kirikae T, Pokhrel BM.

Antimicrob Agents Chemother. 2014 Oct;58(10):6324-7. doi: 10.1128/AAC.03354-14. Epub 2014 Aug 4.


NDM-12, a novel New Delhi metallo-β-lactamase variant from a carbapenem-resistant Escherichia coli clinical isolate in Nepal.

Tada T, Shrestha B, Miyoshi-Akiyama T, Shimada K, Ohara H, Kirikae T, Pokhrel BM.

Antimicrob Agents Chemother. 2014 Oct;58(10):6302-5. doi: 10.1128/AAC.03355-14. Epub 2014 Aug 4.


Dissemination in Japan of multidrug-resistant Pseudomonas aeruginosa isolates producing IMP-type metallo-β-lactamases and AAC(6')-Iae/AAC(6')-Ib.

Tojo M, Tada T, Shimojima M, Tanaka M, Narahara K, Miyoshi-Akiyama T, Kirikae T, Ohmagari N.

J Infect Chemother. 2014 Sep;20(9):586-8. doi: 10.1016/j.jiac.2014.04.014. Epub 2014 Jun 6.


Molecular and epidemiological characterization of IMP-type metallo-β-lactamase-producing Enterobacter cloacae in a Large tertiary care hospital in Japan.

Hayakawa K, Miyoshi-Akiyama T, Kirikae T, Nagamatsu M, Shimada K, Mezaki K, Sugiki Y, Kuroda E, Kubota S, Takeshita N, Kutsuna S, Tojo M, Ohmagari N.

Antimicrob Agents Chemother. 2014 Jun;58(6):3441-50. doi: 10.1128/AAC.02652-13. Epub 2014 Apr 7.


Evaluation of an automated rapid diagnostic assay for detection of Gram-negative bacteria and their drug-resistance genes in positive blood cultures.

Tojo M, Fujita T, Ainoda Y, Nagamatsu M, Hayakawa K, Mezaki K, Sakurai A, Masui Y, Yazaki H, Takahashi H, Miyoshi-Akiyama T, Totsuka K, Kirikae T, Ohmagari N.

PLoS One. 2014 Apr 4;9(4):e94064. doi: 10.1371/journal.pone.0094064. eCollection 2014.


Biochemical analysis of metallo-β-lactamase NDM-3 from a multidrug-resistant Escherichia coli strain isolated in Japan.

Tada T, Miyoshi-Akiyama T, Shimada K, Kirikae T.

Antimicrob Agents Chemother. 2014 Jun;58(6):3538-40. doi: 10.1128/AAC.02793-13. Epub 2014 Mar 31.


Parvimonas micra as a causative organism of spondylodiscitis: a report of two cases and a literature review.

Uemura H, Hayakawa K, Shimada K, Tojo M, Nagamatsu M, Miyoshi-Akiyama T, Tamura S, Mesaki K, Yamamoto K, Yanagawa Y, Sugihara J, Kutsuna S, Takeshita N, Shoda N, Hagiwara A, Kirikae T, Ohmagari N.

Int J Infect Dis. 2014 Jun;23:53-5. doi: 10.1016/j.ijid.2014.02.007. Epub 2014 Mar 26. Review.


Dissemination of 16S rRNA methylase ArmA-producing acinetobacter baumannii and emergence of OXA-72 carbapenemase coproducers in Japan.

Tada T, Miyoshi-Akiyama T, Shimada K, Shimojima M, Kirikae T.

Antimicrob Agents Chemother. 2014 May;58(5):2916-20. doi: 10.1128/AAC.01212-13. Epub 2014 Feb 18.


NDM-1 Metallo-β-Lactamase and ArmA 16S rRNA methylase producing Providencia rettgeri clinical isolates in Nepal.

Tada T, Miyoshi-Akiyama T, Dahal RK, Sah MK, Ohara H, Shimada K, Kirikae T, Pokhrel BM.

BMC Infect Dis. 2014 Feb 3;14:56. doi: 10.1186/1471-2334-14-56.


A silent mutation in mabA confers isoniazid resistance on Mycobacterium tuberculosis.

Ando H, Miyoshi-Akiyama T, Watanabe S, Kirikae T.

Mol Microbiol. 2014 Feb;91(3):538-47. doi: 10.1111/mmi.12476. Epub 2014 Jan 9.


Development of duplex PCR assay for detection and differentiation of typical and atypical Melissococcus plutonius strains.

Arai R, Miyoshi-Akiyama T, Okumura K, Morinaga Y, Wu M, Sugimura Y, Yoshiyama M, Okura M, Kirikae T, Takamatsu D.

J Vet Med Sci. 2014 Apr;76(4):491-8. Epub 2013 Dec 10.


Dissemination of multidrug-resistant Klebsiella pneumoniae clinical isolates with various combinations of carbapenemases (NDM-1 and OXA-72) and 16S rRNA methylases (ArmA, RmtC and RmtF) in Nepal.

Tada T, Miyoshi-Akiyama T, Dahal RK, Mishra SK, Ohara H, Shimada K, Kirikae T, Pokhrel BM.

Int J Antimicrob Agents. 2013 Oct;42(4):372-4. doi: 10.1016/j.ijantimicag.2013.06.014. Epub 2013 Aug 24. No abstract available.


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