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Items: 1 to 50 of 91

1.

Polymorphic edge detection (PED): two efficient methods of polymorphism detection from next-generation sequencing data.

Miyao A, Kiyomiya JS, Iida K, Doi K, Yasue H.

BMC Bioinformatics. 2019 Jun 28;20(1):362. doi: 10.1186/s12859-019-2955-6.

2.

Specification of basal region identity after asymmetric zygotic division requires mitogen-activated protein kinase 6 in rice.

Ishimoto K, Sohonahra S, Kishi-Kaboshi M, Itoh JI, Hibara KI, Sato Y, Watanabe T, Abe K, Miyao A, Nosaka-Takahashi M, Suzuki T, Ta NK, Shimizu-Sato S, Suzuki T, Toyoda A, Takahashi H, Nakazono M, Nagato Y, Hirochika H, Sato Y.

Development. 2019 Jun 21;146(13). pii: dev176305. doi: 10.1242/dev.176305.

PMID:
31118231
3.

Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.

Morey SR, Hirose T, Hashida Y, Miyao A, Hirochika H, Ohsugi R, Yamagishi J, Aoki N.

Funct Plant Biol. 2019 May 2. doi: 10.1071/FP18291. [Epub ahead of print]

PMID:
31043226
4.

The urea transporter DUR3 contributes to rice production under nitrogen-deficient and field conditions.

Beier MP, Fujita T, Sasaki K, Kanno K, Ohashi M, Tamura W, Konishi N, Saito M, Imagawa F, Ishiyama K, Miyao A, Yamaya T, Kojima S.

Physiol Plant. 2019 Sep;167(1):75-89. doi: 10.1111/ppl.12872. Epub 2019 Jan 9.

PMID:
30426495
5.

A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane.

Roth R, Chiapello M, Montero H, Gehrig P, Grossmann J, O'Holleran K, Hartken D, Walters F, Yang SY, Hillmer S, Schumacher K, Bowden S, Craze M, Wallington EJ, Miyao A, Sawers R, Martinoia E, Paszkowski U.

Nat Commun. 2018 Nov 8;9(1):4677. doi: 10.1038/s41467-018-06865-z.

6.

Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.

Morey SR, Hirose T, Hashida Y, Miyao A, Hirochika H, Ohsugi R, Yamagishi J, Aoki N.

Rice (N Y). 2018 Jan 17;11(1):6. doi: 10.1186/s12284-018-0201-x.

7.

Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition.

Cheng C, Tarutani Y, Miyao A, Ito T, Yamazaki M, Sakai H, Fukai E, Hirochika H.

Plant J. 2015 Sep;83(6):1069-81. doi: 10.1111/tpj.12952.

8.

Phenotypic analyses of rice lse2 and lse3 mutants that exhibit hyperaccumulation of starch in the leaf blades.

Liang C, Hirose T, Okamura M, Tanimoto R, Miyao A, Hirochika H, Terao T, Li T, Ohsugi R, Aoki N.

Rice (N Y). 2014 Dec;7(1):32. doi: 10.1186/s12284-014-0032-3. Epub 2014 Dec 21.

9.

Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice.

Alam MM, Nakamura H, Ichikawa H, Miyao A, Hirochika H, Kobayashi K, Yamaoka N, Nishiguchi M.

Rice (N Y). 2014 Dec;7(1):9. doi: 10.1186/s12284-014-0009-2. Epub 2014 Aug 27.

11.

OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.

Kurusu T, Koyano T, Hanamata S, Kubo T, Noguchi Y, Yagi C, Nagata N, Yamamoto T, Ohnishi T, Okazaki Y, Kitahata N, Ando D, Ishikawa M, Wada S, Miyao A, Hirochika H, Shimada H, Makino A, Saito K, Ishida H, Kinoshita T, Kurata N, Kuchitsu K.

Autophagy. 2014 May;10(5):878-88. doi: 10.4161/auto.28279. Epub 2014 Mar 24.

12.

Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements.

Nakagome M, Solovieva E, Takahashi A, Yasue H, Hirochika H, Miyao A.

BMC Bioinformatics. 2014 Mar 14;15:71. doi: 10.1186/1471-2105-15-71.

13.

Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.).

Hanzawa E, Sasaki K, Nagai S, Obara M, Fukuta Y, Uga Y, Miyao A, Hirochika H, Higashitani A, Maekawa M, Sato T.

Rice (N Y). 2013 Nov 20;6(1):30. doi: 10.1186/1939-8433-6-30.

14.

Identification of transcription factors involved in rice secondary cell wall formation.

Hirano K, Kondo M, Aya K, Miyao A, Sato Y, Antonio BA, Namiki N, Nagamura Y, Matsuoka M.

Plant Cell Physiol. 2013 Nov;54(11):1791-802. doi: 10.1093/pcp/pct122. Epub 2013 Oct 1.

PMID:
24089432
15.

RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation.

Toda Y, Tanaka M, Ogawa D, Kurata K, Kurotani K, Habu Y, Ando T, Sugimoto K, Mitsuda N, Katoh E, Abe K, Miyao A, Hirochika H, Hattori T, Takeda S.

Plant Cell. 2013 May;25(5):1709-25. doi: 10.1105/tpc.113.112052. Epub 2013 May 28.

16.

Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice.

Ueda K, Yoshimura F, Miyao A, Hirochika H, Nonomura K, Wabiko H.

Plant Physiol. 2013 Jun;162(2):858-71. doi: 10.1104/pp.113.216523. Epub 2013 Apr 29.

17.

Reverse-genetic approach to verify physiological roles of rice phytoalexins: characterization of a knockdown mutant of OsCPS4 phytoalexin biosynthetic gene in rice.

Toyomasu T, Usui M, Sugawara C, Otomo K, Hirose Y, Miyao A, Hirochika H, Okada K, Shimizu T, Koga J, Hasegawa M, Chuba M, Kawana Y, Kuroda M, Minami E, Mitsuhashi W, Yamane H.

Physiol Plant. 2014 Jan;150(1):55-62. doi: 10.1111/ppl.12066. Epub 2013 Jun 10.

PMID:
23621683
18.

Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice.

Chen H, Kobayashi K, Miyao A, Hirochika H, Yamaoka N, Nishiguchi M.

PLoS One. 2013;8(1):e55252. doi: 10.1371/journal.pone.0055252. Epub 2013 Jan 30.

19.

Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the phosphate transporter1 gene family.

Yang SY, Grønlund M, Jakobsen I, Grotemeyer MS, Rentsch D, Miyao A, Hirochika H, Kumar CS, Sundaresan V, Salamin N, Catausan S, Mattes N, Heuer S, Paszkowski U.

Plant Cell. 2012 Oct;24(10):4236-51. doi: 10.1105/tpc.112.104901. Epub 2012 Oct 16.

20.

Cryptochrome and phytochrome cooperatively but independently reduce active gibberellin content in rice seedlings under light irradiation.

Hirose F, Inagaki N, Hanada A, Yamaguchi S, Kamiya Y, Miyao A, Hirochika H, Takano M.

Plant Cell Physiol. 2012 Sep;53(9):1570-82. doi: 10.1093/pcp/pcs097. Epub 2012 Jul 3.

21.

Regulation of a proteinaceous elicitor-induced Ca2+ influx and production of phytoalexins by a putative voltage-gated cation channel, OsTPC1, in cultured rice cells.

Hamada H, Kurusu T, Okuma E, Nokajima H, Kiyoduka M, Koyano T, Sugiyama Y, Okada K, Koga J, Saji H, Miyao A, Hirochika H, Yamane H, Murata Y, Kuchitsu K.

J Biol Chem. 2012 Mar 23;287(13):9931-9. doi: 10.1074/jbc.M111.337659. Epub 2012 Jan 23.

22.

Molecular spectrum of somaclonal variation in regenerated rice revealed by whole-genome sequencing.

Miyao A, Nakagome M, Ohnuma T, Yamagata H, Kanamori H, Katayose Y, Takahashi A, Matsumoto T, Hirochika H.

Plant Cell Physiol. 2012 Jan;53(1):256-64. doi: 10.1093/pcp/pcr172. Epub 2011 Dec 7.

PMID:
22156226
23.

A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance.

Asano T, Hayashi N, Kobayashi M, Aoki N, Miyao A, Mitsuhara I, Ichikawa H, Komatsu S, Hirochika H, Kikuchi S, Ohsugi R.

Plant J. 2012 Jan;69(1):26-36. doi: 10.1111/j.1365-313X.2011.04766.x. Epub 2011 Oct 10.

24.

An ATP-binding cassette subfamily G full transporter is essential for the retention of leaf water in both wild barley and rice.

Chen G, Komatsuda T, Ma JF, Nawrath C, Pourkheirandish M, Tagiri A, Hu YG, Sameri M, Li X, Zhao X, Liu Y, Li C, Ma X, Wang A, Nair S, Wang N, Miyao A, Sakuma S, Yamaji N, Zheng X, Nevo E.

Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12354-9. doi: 10.1073/pnas.1108444108. Epub 2011 Jul 7.

25.

RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice.

Ogawa D, Abe K, Miyao A, Kojima M, Sakakibara H, Mizutani M, Morita H, Toda Y, Hobo T, Sato Y, Hattori T, Hirochika H, Takeda S.

Nat Commun. 2011;2:278. doi: 10.1038/ncomms1279.

26.

A novel RNA-recognition-motif protein is required for premeiotic G1/S-phase transition in rice (Oryza sativa L.).

Nonomura K, Eiguchi M, Nakano M, Takashima K, Komeda N, Fukuchi S, Miyazaki S, Miyao A, Hirochika H, Kurata N.

PLoS Genet. 2011 Jan 6;7(1):e1001265. doi: 10.1371/journal.pgen.1001265.

27.

Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.

Nagamura Y, Antonio BA, Sato Y, Miyao A, Namiki N, Yonemaru J, Minami H, Kamatsuki K, Shimura K, Shimizu Y, Hirochika H.

Plant Cell Physiol. 2011 Feb;52(2):230-7. doi: 10.1093/pcp/pcq197. Epub 2011 Jan 6.

28.

Isolation, fine mapping and expression profiling of a lesion mimic genotype, spl(NF4050-8) that confers blast resistance in rice.

Babu R, Jiang CJ, Xu X, Kottapalli KR, Takatsuji H, Miyao A, Hirochika H, Kawasaki S.

Theor Appl Genet. 2011 Mar;122(4):831-54. doi: 10.1007/s00122-010-1490-7. Epub 2010 Dec 4.

PMID:
21132425
29.

Negative feedback regulation of microbe-associated molecular pattern-induced cytosolic Ca2+ transients by protein phosphorylation.

Kurusu T, Hamada H, Sugiyama Y, Yagala T, Kadota Y, Furuichi T, Hayashi T, Umemura K, Komatsu S, Miyao A, Hirochika H, Kuchitsu K.

J Plant Res. 2011 May;124(3):415-24. doi: 10.1007/s10265-010-0388-4. Epub 2010 Nov 10.

PMID:
21063744
30.

Pdk1 kinase regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice.

Matsui H, Miyao A, Takahashi A, Hirochika H.

Plant Cell Physiol. 2010 Dec;51(12):2082-91. doi: 10.1093/pcp/pcq167. Epub 2010 Nov 3.

PMID:
21051443
31.

Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging.

Takahashi A, Hayashi N, Miyao A, Hirochika H.

BMC Plant Biol. 2010 Aug 13;10:175. doi: 10.1186/1471-2229-10-175.

32.

Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected.

Hirose T, Zhang Z, Miyao A, Hirochika H, Ohsugi R, Terao T.

J Exp Bot. 2010 Aug;61(13):3639-46. doi: 10.1093/jxb/erq175. Epub 2010 Jul 5.

33.

A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis.

Kishi-Kaboshi M, Okada K, Kurimoto L, Murakami S, Umezawa T, Shibuya N, Yamane H, Miyao A, Takatsuji H, Takahashi A, Hirochika H.

Plant J. 2010 Aug;63(4):599-612. doi: 10.1111/j.1365-313X.2010.04264.x.

34.

SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice.

Asano K, Miyao A, Hirochika H, Kitano H, Matsuoka M, Ashikari M.

Proc Jpn Acad Ser B Phys Biol Sci. 2010;86(3):265-73.

35.

Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.

Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M.

Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5792-7. doi: 10.1073/pnas.0911965107. Epub 2010 Mar 10.

36.

The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling.

Yoshii M, Yamazaki M, Rakwal R, Kishi-Kaboshi M, Miyao A, Hirochika H.

Plant J. 2010 Mar;61(5):804-15. doi: 10.1111/j.1365-313X.2009.04107.x. Epub 2009 Dec 15.

37.

PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice.

Kobayashi K, Maekawa M, Miyao A, Hirochika H, Kyozuka J.

Plant Cell Physiol. 2010 Jan;51(1):47-57. doi: 10.1093/pcp/pcp166. Epub 2009 Nov 19.

38.

MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.

Ohmori S, Kimizu M, Sugita M, Miyao A, Hirochika H, Uchida E, Nagato Y, Yoshida H.

Plant Cell. 2009 Oct;21(10):3008-25. doi: 10.1105/tpc.109.068742. Epub 2009 Oct 9.

39.

Characterization of pullulanase (PUL)-deficient mutants of rice (Oryza sativa L.) and the function of PUL on starch biosynthesis in the developing rice endosperm.

Fujita N, Toyosawa Y, Utsumi Y, Higuchi T, Hanashiro I, Ikegami A, Akuzawa S, Yoshida M, Mori A, Inomata K, Itoh R, Miyao A, Hirochika H, Satoh H, Nakamura Y.

J Exp Bot. 2009;60(3):1009-23. doi: 10.1093/jxb/ern349. Epub 2009 Feb 3.

40.

Arbuscular mycorrhiza-specific signaling in rice transcends the common symbiosis signaling pathway.

Gutjahr C, Banba M, Croset V, An K, Miyao A, An G, Hirochika H, Imaizumi-Anraku H, Paszkowski U.

Plant Cell. 2008 Nov;20(11):2989-3005. doi: 10.1105/tpc.108.062414. Epub 2008 Nov 25.

41.

Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus.

Yoshii M, Shimizu T, Yamazaki M, Higashi T, Miyao A, Hirochika H, Omura T.

Plant J. 2009 Feb;57(4):615-25. doi: 10.1111/j.1365-313X.2008.03712.x. Epub 2008 Oct 10.

42.

Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway.

Banba M, Gutjahr C, Miyao A, Hirochika H, Paszkowski U, Kouchi H, Imaizumi-Anraku H.

Plant Cell Physiol. 2008 Nov;49(11):1659-71. doi: 10.1093/pcp/pcn153. Epub 2008 Oct 13.

PMID:
18852152
43.

Loss of cytosolic fructose-1,6-bisphosphatase limits photosynthetic sucrose synthesis and causes severe growth retardations in rice (Oryza sativa).

Lee SK, Jeon JS, Börnke F, Voll L, Cho JI, Goh CH, Jeong SW, Park YI, Kim SJ, Choi SB, Miyao A, Hirochika H, An G, Cho MH, Bhoo SH, Sonnewald U, Hahn TR.

Plant Cell Environ. 2008 Dec;31(12):1851-63. doi: 10.1111/j.1365-3040.2008.01890.x. Epub 2008 Sep 22.

44.

OsRecQ1, a QDE-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for double-stranded RNA.

Chen H, Samadder PP, Tanaka Y, Ohira T, Okuizumi H, Yamaoka N, Miyao A, Hirochika H, Ohira T, Tsuchimoto S, Ohtsubo H, Nishiguchi M.

Plant J. 2008 Oct;56(2):274-286. doi: 10.1111/j.1365-313X.2008.03587.x. Epub 2008 Jun 28. Erratum in: Plant J. 2009 May;58(3):539.

45.

A genome-wide gain-of function analysis of rice genes using the FOX-hunting system.

Nakamura H, Hakata M, Amano K, Miyao A, Toki N, Kajikawa M, Pang J, Higashi N, Ando S, Toki S, Fujita M, Enju A, Seki M, Nakazawa M, Ichikawa T, Shinozaki K, Matsui M, Nagamura Y, Hirochika H, Ichikawa H.

Plant Mol Biol. 2007 Nov;65(4):357-71. Epub 2007 Oct 10.

PMID:
17929174
46.

Rice Pti1a negatively regulates RAR1-dependent defense responses.

Takahashi A, Agrawal GK, Yamazaki M, Onosato K, Miyao A, Kawasaki T, Shimamoto K, Hirochika H.

Plant Cell. 2007 Sep;19(9):2940-51. Epub 2007 Sep 21.

47.

A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.

Nonomura K, Morohoshi A, Nakano M, Eiguchi M, Miyao A, Hirochika H, Kurata N.

Plant Cell. 2007 Aug;19(8):2583-94. Epub 2007 Aug 3.

48.

The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts.

Tozawa Y, Teraishi M, Sasaki T, Sonoike K, Nishiyama Y, Itaya M, Miyao A, Hirochika H.

Plant J. 2007 Oct;52(1):124-32. Epub 2007 Jul 25.

49.

Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm.

Fujita N, Yoshida M, Kondo T, Saito K, Utsumi Y, Tokunaga T, Nishi A, Satoh H, Park JH, Jane JL, Miyao A, Hirochika H, Nakamura Y.

Plant Physiol. 2007 Aug;144(4):2009-23. Epub 2007 Jun 22.

50.

Rice OsHKT2;1 transporter mediates large Na+ influx component into K+-starved roots for growth.

Horie T, Costa A, Kim TH, Han MJ, Horie R, Leung HY, Miyao A, Hirochika H, An G, Schroeder JI.

EMBO J. 2007 Jun 20;26(12):3003-14. Epub 2007 May 31.

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