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Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.

Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T.

Genome Biol. 2019 Aug 9;20(1):161. doi: 10.1186/s13059-019-1781-5.


Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.

Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T.

Genome Biol. 2019 Jun 21;20(1):126. doi: 10.1186/s13059-019-1729-9. Erratum in: Genome Biol. 2019 Aug 9;20(1):161.


Antagonistic selection and pleiotropy constrain the evolution of plant chemical defenses.

Keith RA, Mitchell-Olds T.

Evolution. 2019 May;73(5):947-960. doi: 10.1111/evo.13728. Epub 2019 Apr 15.


Ecological differentiation facilitates fine-scale coexistence of sexual and asexual Boechera.

Rushworth CA, Windham MD, Keith RA, Mitchell-Olds T.

Am J Bot. 2018 Dec;105(12):2051-2064. doi: 10.1002/ajb2.1201. Epub 2018 Dec 13.


The Functional Change and Deletion of FLC Homologs Contribute to the Evolution of Rapid Flowering in Boechera stricta.

Lee CR, Hsieh JW, Schranz ME, Mitchell-Olds T.

Front Plant Sci. 2018 Jul 31;9:1078. doi: 10.3389/fpls.2018.01078. eCollection 2018.


Physiological mechanisms contributing to the QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought.

Grondin A, Dixit S, Torres R, Venkateshwarlu C, Rogers E, Mitchell-Olds T, Benfey PN, Kumar A, Henry A.

Rice (N Y). 2018 Jul 31;11(1):43. doi: 10.1186/s12284-018-0234-1.


DIACYLGLYCEROL ACYLTRANSFERASE1 Contributes to Freezing Tolerance.

Arisz SA, Heo JY, Koevoets IT, Zhao T, van Egmond P, Meyer AJ, Zeng W, Niu X, Wang B, Mitchell-Olds T, Schranz ME, Testerink C.

Plant Physiol. 2018 Aug;177(4):1410-1424. doi: 10.1104/pp.18.00503. Epub 2018 Jun 15.


Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes.

Kliver S, Rayko M, Komissarov A, Bakin E, Zhernakova D, Prasad K, Rushworth C, Baskar R, Smetanin D, Schmutz J, Rokhsar DS, Mitchell-Olds T, Grossniklaus U, Brukhin V.

Genes (Basel). 2018 Mar 28;9(4). pii: E185. doi: 10.3390/genes9040185.


Plasticity of plant defense and its evolutionary implications in wild populations of Boechera stricta.

Wagner MR, Mitchell-Olds T.

Evolution. 2018 May;72(5):1034-1049. doi: 10.1111/evo.13469. Epub 2018 Apr 10.


Balancing selection and trans-specific polymorphisms.

Wang B, Mitchell-Olds T.

Genome Biol. 2017 Dec 12;18(1):231. doi: 10.1186/s13059-017-1365-1.


Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone.

Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Luis Goicoechea J, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, Kudrna D, Zhang J, Talag J, Golser W, Ghattas K, Schranz ME, Wing R, Lysak MA, Schmutz J, Rokhsar DS, Mitchell-Olds T.

Nat Ecol Evol. 2017 Oct;1(10):1585. doi: 10.1038/s41559-017-0310-8.


Young inversion with multiple linked QTLs under selection in a hybrid zone.

Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, Kudrna D, Zhang J, Talag J, Golser W, Ghattas K, Schranz ME, Wing R, Lysak MA, Schmutz J, Rokhsar DS, Mitchell-Olds T.

Nat Ecol Evol. 2017 Apr 3;1(5):119. doi: 10.1038/s41559-017-0119. Erratum in: Nat Ecol Evol. 2017 Oct;1(10 ):1585.


Testing the optimal defense hypothesis in nature: Variation for glucosinolate profiles within plants.

Keith RA, Mitchell-Olds T.

PLoS One. 2017 Jul 21;12(7):e0180971. doi: 10.1371/journal.pone.0180971. eCollection 2017.


QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance.

Yao N, Lee CR, Semagn K, Sow M, Nwilene F, Kolade O, Bocco R, Oyetunji O, Mitchell-Olds T, Ndjiondjop MN.

PLoS One. 2016 Aug 10;11(8):e0160749. doi: 10.1371/journal.pone.0160749. eCollection 2016.


Host genotype and age shape the leaf and root microbiomes of a wild perennial plant.

Wagner MR, Lundberg DS, Del Rio TG, Tringe SG, Dangl JL, Mitchell-Olds T.

Nat Commun. 2016 Jul 12;7:12151. doi: 10.1038/ncomms12151.


Microgeographic Patterns of Genetic Divergence and Adaptation across Environmental Gradients in Boechera stricta (Brassicaceae).

Anderson JT, Perera N, Chowdhury B, Mitchell-Olds T.

Am Nat. 2015 Oct;186 Suppl 1:S60-73. doi: 10.1086/682404. Epub 2015 Aug 17.


Natural variation, differentiation, and genetic trade-offs of ecophysiological traits in response to water limitation in Brachypodium distachyon and its descendent allotetraploid B. hybridum (Poaceae).

Manzaneda AJ, Rey PJ, Anderson JT, Raskin E, Weiss-Lehman C, Mitchell-Olds T.

Evolution. 2015 Oct;69(10):2689-704. doi: 10.1111/evo.12776. Epub 2015 Sep 28.


Flux Control in a Defense Pathway in Arabidopsis thaliana Is Robust to Environmental Perturbations and Controls Variation in Adaptive Traits.

Olson-Manning CF, Strock CF, Mitchell-Olds T.

G3 (Bethesda). 2015 Sep 10;5(11):2421-7. doi: 10.1534/g3.115.021816.


Large-scale adaptive divergence in Boechera fecunda, an endangered wild relative of Arabidopsis.

Leamy LJ, Lee CR, Cousins V, Mujacic I, Manzaneda AJ, Prasad K, Mitchell-Olds T, Song BH.

Ecol Evol. 2014 Aug;4(16):3175-86. doi: 10.1002/ece3.1148. Epub 2014 Jul 22.


Unifying genetic canalization, genetic constraint, and genotype-by-environment interaction: QTL by genomic background by environment interaction of flowering time in Boechera stricta.

Lee CR, Anderson JT, Mitchell-Olds T.

PLoS Genet. 2014 Oct 23;10(10):e1004727. doi: 10.1371/journal.pgen.1004727. eCollection 2014 Oct.


Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, Budak H, Tuna M, Mitchell-Olds T, Pfender WF, Juenger TE, Mockler TC, Vogel JP.

Plant J. 2014 Aug;79(3):361-74. doi: 10.1111/tpj.12569. Epub 2014 Jul 15.


Identification of quantitative trait loci and a candidate locus for freezing tolerance in controlled and outdoor environments in the overwintering crucifer Boechera stricta.

Heo JY, Feng D, Niu X, Mitchell-Olds T, Van Tienderen PH, Tomes D, Schranz ME.

Plant Cell Environ. 2014 Nov;37(11):2459-69. doi: 10.1111/pce.12365. Epub 2014 Jun 9.


Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative.

Wagner MR, Lundberg DS, Coleman-Derr D, Tringe SG, Dangl JL, Mitchell-Olds T.

Ecol Lett. 2014 Jun;17(6):717-26. doi: 10.1111/ele.12276. Epub 2014 Apr 4. Erratum in: Ecol Lett. 2015 Feb;18(2):218-20.


Strong selection genome-wide enhances fitness trade-offs across environments and episodes of selection.

Anderson JT, Lee CR, Mitchell-Olds T.

Evolution. 2014 Jan;68(1):16-31. doi: 10.1111/evo.12259. Epub 2013 Sep 16.


Selection on QTL and complex traits in complex environments.

Mitchell-Olds T.

Mol Ecol. 2013 Jul;22(13):3427-9.


On the origin and evolution of apomixis in Boechera.

Lovell JT, Aliyu OM, Mau M, Schranz ME, Koch M, Kiefer C, Song BH, Mitchell-Olds T, Sharbel TF.

Plant Reprod. 2013 Dec;26(4):309-15. doi: 10.1007/s00497-013-0218-7. Epub 2013 Jun 20.


The evolution of quantitative traits in complex environments.

Anderson JT, Wagner MR, Rushworth CA, Prasad KV, Mitchell-Olds T.

Heredity (Edinb). 2014 Jan;112(1):4-12. doi: 10.1038/hdy.2013.33. Epub 2013 Apr 24. Review.


3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.

Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Zurek PR, Symonova O, Zheng Y, Bucksch A, Mileyko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, Benfey PN.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):E1695-704. doi: 10.1073/pnas.1304354110. Epub 2013 Apr 11.


Signatures of demography and recombination at coding genes in naturally-distributed populations of Arabidopsis lyrata subsp. petraea.

Vigueira CC, Rauh B, Mitchell-Olds T, Lawton-Rauh AL.

PLoS One. 2013;8(3):e58916. doi: 10.1371/journal.pone.0058916. Epub 2013 Mar 12.


The Reference Genome of the Halophytic Plant Eutrema salsugineum.

Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X.

Front Plant Sci. 2013 Mar 21;4:46. doi: 10.3389/fpls.2013.00046. eCollection 2013.


Complex trait divergence contributes to environmental niche differentiation in ecological speciation of Boechera stricta.

Lee CR, Mitchell-Olds T.

Mol Ecol. 2013 Apr;22(8):2204-17. doi: 10.1111/mec.12250. Epub 2013 Feb 22.


Adaptive evolution: evaluating empirical support for theoretical predictions.

Olson-Manning CF, Wagner MR, Mitchell-Olds T.

Nat Rev Genet. 2012 Dec;13(12):867-77. doi: 10.1038/nrg3322. Review.


The calmodulin-binding transcription factor SIGNAL RESPONSIVE1 is a novel regulator of glucosinolate metabolism and herbivory tolerance in Arabidopsis.

Laluk K, Prasad KV, Savchenko T, Celesnik H, Dehesh K, Levy M, Mitchell-Olds T, Reddy AS.

Plant Cell Physiol. 2012 Dec;53(12):2008-15. doi: 10.1093/pcp/pcs143. Epub 2012 Oct 16.


Evolutionary and ecological responses to anthropogenic climate change: update on anthropogenic climate change.

Anderson JT, Panetta AM, Mitchell-Olds T.

Plant Physiol. 2012 Dec;160(4):1728-40. doi: 10.1104/pp.112.206219. Epub 2012 Oct 5. Review. No abstract available.


A gain-of-function polymorphism controlling complex traits and fitness in nature.

Prasad KV, Song BH, Olson-Manning C, Anderson JT, Lee CR, Schranz ME, Windsor AJ, Clauss MJ, Manzaneda AJ, Naqvi I, Reichelt M, Gershenzon J, Rupasinghe SG, Schuler MA, Mitchell-Olds T.

Science. 2012 Aug 31;337(6098):1081-4. doi: 10.1126/science.1221636.


Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana.

Olson-Manning CF, Lee CR, Rausher MD, Mitchell-Olds T.

Mol Biol Evol. 2013 Jan;30(1):14-23. doi: 10.1093/molbev/mss204. Epub 2012 Aug 25.


Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome.

Lee CR, Mitchell-Olds T.

Mol Biol Evol. 2012 Dec;29(12):3721-8. doi: 10.1093/molbev/mss174. Epub 2012 Jul 13.


Phenotypic plasticity and adaptive evolution contribute to advancing flowering phenology in response to climate change.

Anderson JT, Inouye DW, McKinney AM, Colautti RI, Mitchell-Olds T.

Proc Biol Sci. 2012 Sep 22;279(1743):3843-52. doi: 10.1098/rspb.2012.1051. Epub 2012 Jul 11.


Genetic trade-offs and conditional neutrality contribute to local adaptation.

Anderson JT, Lee CR, Rushworth CA, Colautti RI, Mitchell-Olds T.

Mol Ecol. 2013 Feb;22(3):699-708. doi: 10.1111/j.1365-294X.2012.05522.x. Epub 2012 Mar 15.


Origin, fate, and architecture of ecologically relevant genetic variation.

Colautti RI, Lee CR, Mitchell-Olds T.

Curr Opin Plant Biol. 2012 Apr;15(2):199-204. doi: 10.1016/j.pbi.2012.01.016. Epub 2012 Feb 14. Review.


Environmental aridity is associated with cytotype segregation and polyploidy occurrence in Brachypodium distachyon (Poaceae).

Manzaneda AJ, Rey PJ, Bastida JM, Weiss-Lehman C, Raskin E, Mitchell-Olds T.

New Phytol. 2012 Feb;193(3):797-805. doi: 10.1111/j.1469-8137.2011.03988.x. Epub 2011 Dec 12.


Boechera, a model system for ecological genomics.

Rushworth CA, Song BH, Lee CR, Mitchell-Olds T.

Mol Ecol. 2011 Dec;20(23):4843-57. doi: 10.1111/j.1365-294X.2011.05340.x. Epub 2011 Nov 8. Review.


Quantifying effects of environmental and geographical factors on patterns of genetic differentiation.

Lee CR, Mitchell-Olds T.

Mol Ecol. 2011 Nov;20(22):4631-42. doi: 10.1111/j.1365-294X.2011.05310.x. Epub 2011 Oct 14.


Repeated phenotypic changes highlight molecular targets of convergent evolution.

Wagner MR, Mitchell-Olds T.

Genome Biol. 2011 Aug 23;12(8):124. doi: 10.1186/gb-2011-12-8-124.


Brachypodium as a model for the grasses: today and the future.

Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, Vain P, Brutnell T, Sibout R, Bevan M, Budak H, Caicedo AL, Gao C, Gu Y, Hazen SP, Holt BF 3rd, Hong SY, Jordan M, Manzaneda AJ, Mitchell-Olds T, Mochida K, Mur LA, Park CM, Sedbrook J, Watt M, Zheng SJ, Vogel JP.

Plant Physiol. 2011 Sep;157(1):3-13. doi: 10.1104/pp.111.179531. Epub 2011 Jul 19. No abstract available.


Evolutionary genetics of plant adaptation.

Anderson JT, Willis JH, Mitchell-Olds T.

Trends Genet. 2011 Jul;27(7):258-66. doi: 10.1016/j.tig.2011.04.001. Review.


Ecological genetics and genomics of plant defenses: Evidence and approaches.

Anderson JT, Mitchell-Olds T.

Funct Ecol. 2011 Apr;25(2):312-324.


Evolutionary and Ecological Genomics of Non-Model Plants.

Song BH, Mitchell-Olds T.

J Syst Evol. 2011 Jan 1;49(1):17-24.


Beyond QTL cloning.

Anderson JT, Mitchell-Olds T.

PLoS Genet. 2010 Nov 11;6(11):e1001197. doi: 10.1371/journal.pgen.1001197. No abstract available.


Life-history QTLS and natural selection on flowering time in Boechera stricta, a perennial relative of Arabidopsis.

Anderson JT, Lee CR, Mitchell-Olds T.

Evolution. 2011 Mar;65(3):771-87. doi: 10.1111/j.1558-5646.2010.01175.x. Epub 2010 Nov 17.

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