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Items: 1 to 50 of 82

1.

Discrimination power of knowledge-based potential dictated by the dominant energies in native protein structures.

Mirzaie M.

Amino Acids. 2019 Jul;51(7):1029-1038. doi: 10.1007/s00726-019-02743-0. Epub 2019 May 16.

PMID:
31098784
2.

Reply to 'Methodological and statistical questions regarding a study on hair nickel and chromium'.

Jamshidi S, Rahmati Kamel M, Mirzaie M, Khafri S, Parsian H.

Acta Odontol Scand. 2019 Apr;77(3):235-237. doi: 10.1080/00016357.2018.1551573. No abstract available.

PMID:
30849008
3.

IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis.

Ashtiani M, Nickchi P, Jahangiri-Tazehkand S, Safari A, Mirzaie M, Jafari M.

BMC Bioinformatics. 2019 Feb 12;20(1):73. doi: 10.1186/s12859-019-2659-y.

4.

Protein complex prediction: A survey.

Zahiri J, Emamjomeh A, Bagheri S, Ivazeh A, Mahdevar G, Sepasi Tehrani H, Mirzaie M, Fakheri BA, Mohammad-Noori M.

Genomics. 2019 Jan 17. pii: S0888-7543(18)30572-X. doi: 10.1016/j.ygeno.2019.01.011. [Epub ahead of print] Review.

PMID:
30660789
5.

Three-way interaction model with switching mechanism as an effective strategy for tracing functionally-related genes.

Khayer N, Mirzaie M, Marashi SA, Rezaei-Tavirani M, Goshadrou F.

Expert Rev Proteomics. 2019 Feb;16(2):161-169. doi: 10.1080/14789450.2019.1559734. Epub 2018 Dec 24.

PMID:
30556756
6.

CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis.

Ashtiani M, Mirzaie M, Jafari M.

Bioinformatics. 2019 Apr 15;35(8):1436-1437. doi: 10.1093/bioinformatics/bty819.

PMID:
30239607
7.

Downregulation of Matrix Metalloproteinases 2 and 9 is Involved in the Protective Effect of Trehalose on Spinal Cord Injury.

Mirzaie M, Karimi M, Fallah H, Khaksari M, Nazari-Robati M.

Int J Mol Cell Med. 2018 Winter;7(1):8-16. doi: 10.22088/IJMCM.BUMS.7.1.8. Epub 2018 Mar 23.

8.

Hip arthroplasty in haemophilia: a systematic review.

Parsa A, Azizbaig Mohajer M, Mirzaie M.

Hip Int. 2018 Sep;28(5):459-467. doi: 10.1177/1120700018793777. Epub 2018 Aug 20.

PMID:
30124085
9.

A systematic survey of centrality measures for protein-protein interaction networks.

Ashtiani M, Salehzadeh-Yazdi A, Razaghi-Moghadam Z, Hennig H, Wolkenhauer O, Mirzaie M, Jafari M.

BMC Syst Biol. 2018 Jul 31;12(1):80. doi: 10.1186/s12918-018-0598-2.

10.

Valproic acid inhibits the protective effects of stromal cells against chemotherapy in breast cancer: Insights from proteomics and systems biology.

Barneh F, Salimi M, Goshadrou F, Ashtiani M, Mirzaie M, Zali H, Jafari M.

J Cell Biochem. 2018 Nov;119(11):9270-9283. doi: 10.1002/jcb.27196. Epub 2018 Jun 28.

PMID:
29953653
11.

Hip Surgery in Quiescent or Active Tubercular Hip Arthritis; Is Reactivation Risk Really a Matter.

Parsa A, Mirzaie M, Ebrahimzadeh MH, Birjandinejad A, Malek A, Mousavian A.

Arch Bone Jt Surg. 2018 May;6(3):169-175. Review.

12.

Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer.

Barneh F, Mirzaie M, Nickchi P, Tan TZ, Thiery JP, Piran M, Salimi M, Goshadrou F, Aref AR, Jafari M.

Brief Bioinform. 2019 Mar 25;20(2):717-731. doi: 10.1093/bib/bby030.

PMID:
29726962
13.

Lipid and carotenoid synthesis by Rhodosporidium diobovatum, grown on glucose versus glycerol, and its biodiesel properties.

Nasirian N, Mirzaie M, Cicek N, Levin DB.

Can J Microbiol. 2018 Apr;64(4):277-289. doi: 10.1139/cjm-2017-0613. Epub 2018 Feb 2.

PMID:
29394487
14.

Hydrophobic residues can identify native protein structures.

Mirzaie M.

Proteins. 2018 Apr;86(4):467-474. doi: 10.1002/prot.25466. Epub 2018 Feb 5.

PMID:
29383753
15.

A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology.

Jafari M, Ansari-Pour N, Azimzadeh S, Mirzaie M.

PLoS One. 2017 Dec 21;12(12):e0189922. doi: 10.1371/journal.pone.0189922. eCollection 2017.

16.

Human T-lymphotropic virus 1 (HTLV-1) pathogenesis: A systems virology study.

Mozhgani SH, Zarei-Ghobadi M, Teymoori-Rad M, Mokhtari-Azad T, Mirzaie M, Sheikhi M, Jazayeri SM, Shahbahrami R, Ghourchian H, Jafari M, Rezaee SA, Norouzi M.

J Cell Biochem. 2018 May;119(5):3968-3979. doi: 10.1002/jcb.26546. Epub 2018 Jan 19.

PMID:
29227540
17.

Local injection of carrageenan accelerates orthodontic tooth movement: A preliminary experimental animal study.

Kavoli S, Mirzaie M, Feizi F, Rakhshan V, Arash V, Bijani A.

Int Orthod. 2017 Dec;15(4):588-599. doi: 10.1016/j.ortho.2017.09.001. Epub 2017 Nov 9.

PMID:
29128199
18.

Accélération du mouvement dentaire orthodontique par injection locale de carraghénane : étude expérimentale préliminaire sur animaux.

Kavoli S, Mirzaie M, Feizi F, Rakhshan V, Arash V, Bijani A.

Int Orthod. 2017 Dec;15(4):588-599. doi: 10.1016/j.ortho.2017.09.002. Epub 2017 Nov 9. French. No abstract available.

PMID:
29128198
19.

Three-way interaction model to trace the mechanisms involved in Alzheimer's disease transgenic mice.

Khayer N, Marashi SA, Mirzaie M, Goshadrou F.

PLoS One. 2017 Sep 21;12(9):e0184697. doi: 10.1371/journal.pone.0184697. eCollection 2017.

20.

Evaluation of scalp hair nickel and chromium level changes in patients with fixed orthodontic appliance: a one-year follow-up study.

Jamshidi S, Rahmati Kamel M, Mirzaie M, Sarrafan A, Khafri S, Parsian H.

Acta Odontol Scand. 2018 Jan;76(1):1-5. doi: 10.1080/00016357.2017.1372624. Epub 2017 Sep 9.

PMID:
28889787
21.

Trauma pneumonectomy: A narrative review.

Phillips B, Turco L, Mirzaie M, Fernandez C.

Int J Surg. 2017 Oct;46:71-74. doi: 10.1016/j.ijsu.2017.08.570. Epub 2017 Aug 31. Review.

PMID:
28864394
22.

Trauma to the bladder and ureter: a review of diagnosis, management, and prognosis.

Phillips B, Holzmer S, Turco L, Mirzaie M, Mause E, Mause A, Person A, Leslie SW, Cornell DL, Wagner M, Bertellotti R, Asensio JA.

Eur J Trauma Emerg Surg. 2017 Dec;43(6):763-773. doi: 10.1007/s00068-017-0817-3. Epub 2017 Jul 20. Review.

PMID:
28730297
23.

A Comparative Study of Enamel Surface Roughness After Bleaching With Diode Laser and Nd: YAG Laser.

Mirzaie M, Yassini E, Ganji S, Moradi Z, Chiniforush N.

J Lasers Med Sci. 2016 Summer;7(3):197-200. doi: 10.15171/jlms.2016.34. Epub 2016 Jul 18.

24.

Systems Biomedicine of Rabies Delineates the Affected Signaling Pathways.

Azimzadeh Jamalkandi S, Mozhgani SH, Gholami Pourbadie H, Mirzaie M, Noorbakhsh F, Vaziri B, Gholami A, Ansari-Pour N, Jafari M.

Front Microbiol. 2016 Nov 7;7:1688. eCollection 2016.

25.

Surface treatment comparison by application of diamond bur and Er,Cr:YSGG at different powers: morphological and mechanical evaluation.

Mirzaie M, Yassini E, Etemadi A, Tavakoli A, Chiniforush N.

Laser Ther. 2016 Oct 1;25(3):215-220.

26.

Suitable intravenous fluid for preventing dysnatremia in children with gastroenteritis; a randomized clinical trial.

Golshekan K, Badeli H, Miri M, Mirzaie M, Hassanzadeh Rad A, Salamat F, Abdi Tazeabadi S, Bidar N, Blouki-Moghaddam K, Hashemian H.

J Renal Inj Prev. 2016 Apr 22;5(2):69-73. doi: 10.15171/jrip.2016.15. eCollection 2016.

27.

Resonantly Enhanced Betatron Hard X-rays from Ionization Injected Electrons in a Laser Plasma Accelerator.

Huang K, Li YF, Li DZ, Chen LM, Tao MZ, Ma Y, Zhao JR, Li MH, Chen M, Mirzaie M, Hafz N, Sokollik T, Sheng ZM, Zhang J.

Sci Rep. 2016 Jun 8;6:27633. doi: 10.1038/srep27633.

28.

Investigating the importance of Delaunay-based definition of atomic interactions in scoring of protein-protein docking results.

Jafari R, Sadeghi M, Mirzaie M.

J Mol Graph Model. 2016 May;66:108-14. doi: 10.1016/j.jmgm.2016.04.001. Epub 2016 Apr 4.

PMID:
27060891
29.

Evaluation of temperature change during antimicrobial photodynamic therapy with two different photosensitizers in dental caries.

Mirzaie M, Yassini E, Ashnagar S, Hadadi A, Chiniforush N.

Photodiagnosis Photodyn Ther. 2016 Jun;14:115-8. doi: 10.1016/j.pdpdt.2016.03.005. Epub 2016 Mar 21.

PMID:
27012319
30.

Microtensile strength of resin cement bond to indirect composite treated by different output powers of Er:YAG laser.

Garshasbzadeh NZ, Mirzaie M, Yassini E, Shahabi S, Benedicenti S, Angiero F, Chiniforush N.

Microsc Res Tech. 2016 Apr;79(4):328-33. doi: 10.1002/jemt.22634. Epub 2016 Feb 13.

PMID:
26873266
31.

Polarity-based fractionation in proteomics: hydrophilic interaction vs reversed-phase liquid chromatography.

Jafari M, Mirzaie M, Khodabandeh M, Rezadoost H, Ghassempour A, Aboul-Enein HY.

Biomed Chromatogr. 2016 Jul;30(7):1036-1041. doi: 10.1002/bmc.3647. Epub 2015 Dec 6.

PMID:
26555197
32.

Enhanced electron yield from laser-driven wakefield acceleration in high-Z gas jets.

Mirzaie M, Hafz NA, Li S, Liu F, He F, Cheng Y, Zhang J.

Rev Sci Instrum. 2015 Oct;86(10):103502. doi: 10.1063/1.4931780.

PMID:
26520950
33.

Updates on drug-target network; facilitating polypharmacology and data integration by growth of DrugBank database.

Barneh F, Jafari M, Mirzaie M.

Brief Bioinform. 2016 Nov;17(6):1070-1080. Epub 2015 Oct 21.

PMID:
26490381
34.

Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms.

Jafari M, Mirzaie M, Sadeghi M.

BMC Bioinformatics. 2015 Oct 5;16:319. doi: 10.1186/s12859-015-0755-1.

35.

Demonstration of self-truncated ionization injection for GeV electron beams.

Mirzaie M, Li S, Zeng M, Hafz NA, Chen M, Li GY, Zhu QJ, Liao H, Sokollik T, Liu F, Ma YY, Chen LM, Sheng ZM, Zhang J.

Sci Rep. 2015 Oct 1;5:14659. doi: 10.1038/srep14659.

36.

A Case of Recurrent Kikuchi-Fujimoto Disease.

Erfanian Taghvaei MR, Mirzaie M, Parsa A, Ghiasi Moghadam T.

Jundishapur J Microbiol. 2015 Jul 25;8(7):e25654. doi: 10.5812/jjm.25654v2. eCollection 2015 Jul.

37.

Demographic and Socioeconomic Factors of Patients With Coronary Artery Diseases Undertreatment of Coronary Artery Bypass Grafting, Percutaneous Coronary Intervention and Drug Therapy in Mashhad, Iran.

Mirzaie M, Khajedaluee M, Falsoleiman H, Mirzaie A, Emadzadeh MR, Erfanian Taghvaei MR.

Iran Red Crescent Med J. 2015 Jun 1;17(6):e28238. doi: 10.5812/ircmj.17(5)2015.28238. eCollection 2015 Jun.

38.

Signaling network of lipids as a comprehensive scaffold for omics data integration in sputum of COPD patients.

Azimzadeh Jamalkandi S, Mirzaie M, Jafari M, Mehrani H, Shariati P, Khodabandeh M.

Biochim Biophys Acta. 2015 Oct;1851(10):1383-93. doi: 10.1016/j.bbalip.2015.07.005. Epub 2015 Jul 26. Review.

PMID:
26215076
39.

Interventricular Septum Hydatid Cyst: Successful Seven-Year Follow Up- Case Report.

Mirzaie A, Erfanian-Taghvaei MR, Mirzaie M, Sharifi-Noghabi R.

Iran J Public Health. 2014 Sep;43(9):1295-8.

40.

Clinical outcomes and cost effectiveness of two aftercare models provided by general physicians and nurses to patients with severe mental illness.

Malakouti SK, Mirabzadeh A, Nojomi M, Ahmadi Tonkaboni A, Nadarkhani F, Mirzaie M, Chimeh N.

Med J Islam Repub Iran. 2015 Apr 7;29:196. eCollection 2015.

41.

Erratum: Bioactive Lipids in Emphysema: Decoding Fat to Reveal COPD Phenotypes.

Mirzaie M, Kheradmand F.

Am J Respir Crit Care Med. 2015 May 15;191(10):1210. doi: 10.1164/rccm.19110erratum1. No abstract available.

42.

In vitro antileishmanial activity of methanolic and aqueous extracts of Eucalyptus camaldulensis against Leishmania major.

Nosratabadi SJ, Sharifi I, Sharififar F, Bamorovat M, Daneshvar H, Mirzaie M.

J Parasit Dis. 2015 Mar;39(1):18-21. doi: 10.1007/s12639-013-0377-3. Epub 2013 Nov 12.

43.

Cephalometric evaluation of soft tissue changes after extraction of upper first premolars in class ΙΙ div 1 patients.

Amirabadi GE, Mirzaie M, Kushki SM, Olyaee P.

J Clin Exp Dent. 2014 Dec 1;6(5):e539-45. doi: 10.4317/jced.51474. eCollection 2014 Dec.

44.

The Effect of Different Powers of Er:YAG Laser Treatment on Surface Morphology of an Indirect Composite Resin: SEM Evaluation.

Garshasbzadeh NZ, Mirzaie M, Yassini E, Shahabi S, Chiniforush N.

J Lasers Med Sci. 2014 Summer;5(3):130-4.

45.

Bioactive lipids in emphysema. Decoding fat to reveal COPD phenotypes.

Mirzaie M, Kheradmand F.

Am J Respir Crit Care Med. 2015 Feb 1;191(3):241-3. doi: 10.1164/rccm.201412-2264ED. No abstract available. Erratum in: Am J Respir Crit Care Med. 2015 May 15;191(10):1210.

46.

Enhanced single-stage laser-driven electron acceleration by self-controlled ionization injection.

Li S, Hafz NA, Mirzaie M, Sokollik T, Zeng M, Chen M, Sheng Z, Zhang J.

Opt Express. 2014 Dec 1;22(24):29578-86. doi: 10.1364/OE.22.029578.

PMID:
25606890
47.

Epidemiology of hand injuries in children presenting to an orthopedic trauma center in southeast of iran.

Mirzaie M, Parsa A, Salehi M, Dahmardehei M, Moghadam MH, Mirzaie N.

Arch Bone Jt Surg. 2014 Sep;2(3):225-31. Epub 2014 Sep 15.

48.

Proteomics and traditional medicine: new aspect in explanation of temperaments.

Jafari M, Rezadoost H, Karimi M, Mirzaie M, Rezaie-Tavirani M, Khodabandeh M, Kordafshari G, Abbasian N, Nickchi P, Gilany K, Ghassempour A.

Forsch Komplementmed. 2014;21(4):250-3. doi: 10.1159/000366118. Epub 2014 Aug 16. No abstract available.

PMID:
25231567
50.

Evolutionarily conserved motifs and modules in mitochondrial protein-protein interaction networks.

Jafari M, Sadeghi M, Mirzaie M, Marashi SA, Rezaei-Tavirani M.

Mitochondrion. 2013 Nov;13(6):668-75. doi: 10.1016/j.mito.2013.09.006. Epub 2013 Sep 27.

PMID:
24080200

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