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Items: 21

1.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7.

2.

Assessment of REPLI-g Multiple Displacement Whole Genome Amplification (WGA) Techniques for Metagenomic Applications.

Ahsanuddin S, Afshinnekoo E, Gandara J, Hakyemezoğlu M, Bezdan D, Minot S, Greenfield N, Mason CE.

J Biomol Tech. 2017 Apr;28(1):46-55. doi: 10.7171/jbt.17-2801-008. Epub 2017 Mar 21. Erratum in: J Biomol Tech. 2017 Jul;28(2):96.

3.

MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.

Brown BL, Watson M, Minot SS, Rivera MC, Franklin RB.

Gigascience. 2017 Mar 1;6(3):1-10. doi: 10.1093/gigascience/gix007.

4.

Evolutionary and functional implications of hypervariable loci within the skin virome.

Hannigan GD, Zheng Q, Meisel JS, Minot SS, Bushman FD, Grice EA.

PeerJ. 2017 Feb 7;5:e2959. doi: 10.7717/peerj.2959. eCollection 2017.

5.

Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing.

Sim JH, Truong C, Minot SS, Greenfield N, Budvytiene I, Lohith A, Anikst V, Pourmand N, Banaei N.

Diagn Microbiol Infect Dis. 2017 Jan;87(1):11-16. doi: 10.1016/j.diagmicrobio.2016.09.023. Epub 2016 Oct 5.

PMID:
27771207
6.

Global divergence of the human follicle mite Demodex folliculorum: Persistent associations between host ancestry and mite lineages.

Palopoli MF, Fergus DJ, Minot S, Pei DT, Simison WB, Fernandez-Silva I, Thoemmes MS, Dunn RR, Trautwein M.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15958-63. doi: 10.1073/pnas.1512609112. Epub 2015 Dec 14.

7.

The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.

Hannigan GD, Meisel JS, Tyldsley AS, Zheng Q, Hodkinson BP, SanMiguel AJ, Minot S, Bushman FD, Grice EA.

MBio. 2015 Oct 20;6(5):e01578-15. doi: 10.1128/mBio.01578-15.

8.

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer.

Kilianski A, Haas JL, Corriveau EJ, Liem AT, Willis KL, Kadavy DR, Rosenzweig CN, Minot SS.

Gigascience. 2015 Mar 26;4:12. doi: 10.1186/s13742-015-0051-z. eCollection 2015.

9.
10.

Validation of high throughput sequencing and microbial forensics applications.

Budowle B, Connell ND, Bielecka-Oder A, Colwell RR, Corbett CR, Fletcher J, Forsman M, Kadavy DR, Markotic A, Morse SA, Murch RS, Sajantila A, Schmedes SE, Ternus KL, Turner SD, Minot S.

Investig Genet. 2014 Jul 30;5:9. doi: 10.1186/2041-2223-5-9. eCollection 2014. Review.

11.

Rapid evolution of the human gut virome.

Minot S, Bryson A, Chehoud C, Wu GD, Lewis JD, Bushman FD.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12450-5. doi: 10.1073/pnas.1300833110. Epub 2013 Jul 8.

12.

RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.

Stoltzfus JD, Minot S, Berriman M, Nolan TJ, Lok JB.

PLoS Negl Trop Dis. 2012;6(10):e1854. doi: 10.1371/journal.pntd.0001854. Epub 2012 Oct 25.

13.

Conservation of gene cassettes among diverse viruses of the human gut.

Minot S, Wu GD, Lewis JD, Bushman FD.

PLoS One. 2012;7(8):e42342. doi: 10.1371/journal.pone.0042342. Epub 2012 Aug 10.

14.

Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity.

Minot S, Melo MB, Li F, Lu D, Niedelman W, Levine SS, Saeij JP.

Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13458-63. doi: 10.1073/pnas.1117047109. Epub 2012 Jul 30.

15.

Hypervariable loci in the human gut virome.

Minot S, Grunberg S, Wu GD, Lewis JD, Bushman FD.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3962-6. doi: 10.1073/pnas.1119061109. Epub 2012 Feb 21.

16.

The human gut virome: inter-individual variation and dynamic response to diet.

Minot S, Sinha R, Chen J, Li H, Keilbaugh SA, Wu GD, Lewis JD, Bushman FD.

Genome Res. 2011 Oct;21(10):1616-25. doi: 10.1101/gr.122705.111. Epub 2011 Aug 31.

17.

Suicidal ideation, self-harm and attempted suicide: results from the British psychiatric morbidity survey 2000.

Bebbington PE, Minot S, Cooper C, Dennis M, Meltzer H, Jenkins R, Brugha T.

Eur Psychiatry. 2010 Nov;25(7):427-31. doi: 10.1016/j.eurpsy.2009.12.004.

PMID:
20627465
18.

Suicide attempts, gender, and sexual abuse: data from the 2000 British Psychiatric Morbidity Survey.

Bebbington PE, Cooper C, Minot S, Brugha TS, Jenkins R, Meltzer H, Dennis M.

Am J Psychiatry. 2009 Oct;166(10):1135-40. doi: 10.1176/appi.ajp.2009.09030310. Epub 2009 Sep 1.

PMID:
19723788
19.

Lamotrigine in adolescent mood disorders: a retrospective chart review.

Carandang C, Robbins D, Mullany E, Yazbek M, Minot S.

J Can Acad Child Adolesc Psychiatry. 2007 Feb;16(1):1-8.

20.

Elements of effective clinical supervision.

Minot SR, Adamski TJ.

Perspect Psychiatr Care. 1989;25(2):22-6.

PMID:
2633124
21.

Depression. What does it mean?

Minot SR.

Am J Nurs. 1986 Mar;86(3):284-8. No abstract available.

PMID:
3082207

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