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Items: 38

1.

OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages.

Watanabe K, Liu Y, Noguchi S, Murray M, Chang JC, Kishima M, Nishimura H, Hashimoto K, Minoda A, Suzuki H.

Sci Rep. 2019 Apr 24;9(1):6490. doi: 10.1038/s41598-019-43021-z.

2.

Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritis.

Liu Y, Chang JC, Hon CC, Fukui N, Tanaka N, Zhang Z, Lee MTM, Minoda A.

Sci Rep. 2018 Oct 19;8(1):15499. doi: 10.1038/s41598-018-33779-z.

3.

JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.

Handoko L, Kaczkowski B, Hon CC, Lizio M, Wakamori M, Matsuda T, Ito T, Jeyamohan P, Sato Y, Sakamoto K, Yokoyama S, Kimura H, Minoda A, Umehara T.

Epigenetics. 2018;13(4):410-431. doi: 10.1080/15592294.2018.1469891. Epub 2018 Aug 6.

4.

Peripheral PDGFRα+gp38+ mesenchymal cells support the differentiation of fetal liver-derived ILC2.

Koga S, Hozumi K, Hirano KI, Yazawa M, Terooatea T, Minoda A, Nagasawa T, Koyasu S, Moro K.

J Exp Med. 2018 Jun 4;215(6):1609-1626. doi: 10.1084/jem.20172310. Epub 2018 May 4.

5.

Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity.

Lee Y, Nishizawa T, Takemoto M, Kumazaki K, Yamashita K, Hirata K, Minoda A, Nagatoishi S, Tsumoto K, Ishitani R, Nureki O.

Nat Plants. 2017 Oct;3(10):825-832. doi: 10.1038/s41477-017-0022-8. Epub 2017 Oct 2.

PMID:
28970497
6.

Priming of lineage-specifying genes by Bcl11b is required for lineage choice in post-selection thymocytes.

Kojo S, Tanaka H, Endo TA, Muroi S, Liu Y, Seo W, Tenno M, Kakugawa K, Naoe Y, Nair K, Moro K, Katsuragi Y, Kanai A, Inaba T, Egawa T, Venkatesh B, Minoda A, Kominami R, Taniuchi I.

Nat Commun. 2017 Sep 26;8(1):702. doi: 10.1038/s41467-017-00768-1.

7.

Intracortical signal processing of periodontal ligament sensations in rat.

Minoda A, Mizoguchi N, Kobayashi M, Suda N, Muramoto K.

Neuroscience. 2017 Jul 4;355:212-224. doi: 10.1016/j.neuroscience.2017.04.045. Epub 2017 May 10.

PMID:
28499975
8.

Effective and selective recovery of gold and palladium ions from metal wastewater using a sulfothermophilic red alga, Galdieria sulphuraria.

Ju X, Igarashi K, Miyashita S, Mitsuhashi H, Inagaki K, Fujii S, Sawada H, Kuwabara T, Minoda A.

Bioresour Technol. 2016 Jul;211:759-64. doi: 10.1016/j.biortech.2016.01.061.

9.

Profiling of lipid and glycogen accumulations under different growth conditions in the sulfothermophilic red alga Galdieria sulphuraria.

Sakurai T, Aoki M, Ju X, Ueda T, Nakamura Y, Fujiwara S, Umemura T, Tsuzuki M, Minoda A.

Bioresour Technol. 2016 Jan;200:861-6. doi: 10.1016/j.biortech.2015.11.014. Epub 2015 Nov 14.

PMID:
26595665
10.

Identification of chromatin marks at TERRA promoter and encoding region.

Negishi Y, Kawaji H, Minoda A, Usui K.

Biochem Biophys Res Commun. 2015 Nov 27;467(4):1052-7. doi: 10.1016/j.bbrc.2015.09.176. Epub 2015 Oct 13.

11.

Recovery of rare earth elements from the sulfothermophilic red alga Galdieria sulphuraria using aqueous acid.

Minoda A, Sawada H, Suzuki S, Miyashita S, Inagaki K, Yamamoto T, Tsuzuki M.

Appl Microbiol Biotechnol. 2015 Feb;99(3):1513-9. doi: 10.1007/s00253-014-6070-3. Epub 2014 Oct 7.

PMID:
25283836
12.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

13.

Impact of sequencing depth in ChIP-seq experiments.

Jung YL, Luquette LJ, Ho JW, Ferrari F, Tolstorukov M, Minoda A, Issner R, Epstein CB, Karpen GH, Kuroda MI, Park PJ.

Nucleic Acids Res. 2014 May;42(9):e74. doi: 10.1093/nar/gku178. Epub 2014 Mar 5.

14.

Air-drying of cells, the novel conditions for stimulated synthesis of triacylglycerol in a Green Alga, Chlorella kessleri.

Shiratake T, Sato A, Minoda A, Tsuzuki M, Sato N.

PLoS One. 2013 Nov 15;8(11):e79630. doi: 10.1371/journal.pone.0079630. eCollection 2013.

15.

Nanoparticle assemblies via coordination with a tetrakis(terpyridine) linker bearing a rigid tetrahedral core.

Yamanoi Y, Yamamoto Y, Miyachi M, Shimada M, Minoda A, Oshima S, Kobori Y, Nishihara H.

Langmuir. 2013 Jul 16;29(28):8768-72. doi: 10.1021/la401896d. Epub 2013 Jul 1.

PMID:
23805784
16.

Synthesis of diazenido-ligated vanadium nanoparticles.

Miyachi M, Yamamoto Y, Yamanoi Y, Minoda A, Oshima S, Kobori Y, Nishihara H.

Langmuir. 2013 Apr 30;29(17):5099-103. doi: 10.1021/la400102q. Epub 2013 Apr 17.

PMID:
23581295
17.

Metallo-foldamers with backbone-coordinative oxime peptides: control of secondary structures.

Tashiro S, Matsuoka K, Minoda A, Shionoya M.

Angew Chem Int Ed Engl. 2012 Dec 21;51(52):13123-7. doi: 10.1002/anie.201206968. Epub 2012 Nov 14.

PMID:
23154930
18.

Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain.

Riddle NC, Jung YL, Gu T, Alekseyenko AA, Asker D, Gui H, Kharchenko PV, Minoda A, Plachetka A, Schwartz YB, Tolstorukov MY, Kuroda MI, Pirrotta V, Karpen GH, Park PJ, Elgin SC.

PLoS Genet. 2012 Sep;8(9):e1002954. doi: 10.1371/journal.pgen.1002954. Epub 2012 Sep 20.

19.

Nature and function of insulator protein binding sites in the Drosophila genome.

Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, Kuroda MI, Park PJ, Savitsky M, Karpen GH, Pirrotta V.

Genome Res. 2012 Nov;22(11):2188-98. doi: 10.1101/gr.138156.112. Epub 2012 Jul 5. Erratum in: Genome Res. 2013 Feb;23(2):409.

20.

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, Karpen GH, Pirrotta V, Kuroda MI, Park PJ.

PLoS Genet. 2012;8(4):e1002646. doi: 10.1371/journal.pgen.1002646. Epub 2012 Apr 26. Erratum in: PLoS Genet. 2014 Jan;10(1). doi: 10.1371/annotation/39c76721-c8e1-4d42-ae6b-33063ce207d2.

21.

External light conditions and internal cell cycle phases coordinate accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae.

Kanesaki Y, Imamura S, Minoda A, Tanaka K.

DNA Res. 2012 Jun;19(3):289-303. doi: 10.1093/dnares/dss013. Epub 2012 Apr 19.

22.

Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.

Chiolo I, Minoda A, Colmenares SU, Polyzos A, Costes SV, Karpen GH.

Cell. 2011 Mar 4;144(5):732-44. doi: 10.1016/j.cell.2011.02.012. Epub 2011 Feb 25.

23.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.

24.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

25.

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin.

Riddle NC, Minoda A, Kharchenko PV, Alekseyenko AA, Schwartz YB, Tolstorukov MY, Gorchakov AA, Jaffe JD, Kennedy C, Linder-Basso D, Peach SE, Shanower G, Zheng H, Kuroda MI, Pirrotta V, Park PJ, Elgin SC, Karpen GH.

Genome Res. 2011 Feb;21(2):147-63. doi: 10.1101/gr.110098.110. Epub 2010 Dec 22.

26.

An assessment of histone-modification antibody quality.

Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, Luu Y, Ngo Q, Perry M, Rechtsteiner A, Riddle NC, Schwartz YB, Shanower GA, Vielle A, Ahringer J, Elgin SC, Kuroda MI, Pirrotta V, Ren B, Strome S, Park PJ, Karpen GH, Hawkins RD, Lieb JD.

Nat Struct Mol Biol. 2011 Jan;18(1):91-3. doi: 10.1038/nsmb.1972. Epub 2010 Dec 5.

27.

Nucleus-independent control of the rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae.

Minoda A, Weber AP, Tanaka K, Miyagishima SY.

Plant Physiol. 2010 Nov;154(3):1532-40. doi: 10.1104/pp.110.163188. Epub 2010 Sep 2.

28.

Nitrate assimilatory genes and their transcriptional regulation in a unicellular red alga Cyanidioschyzon merolae: genetic evidence for nitrite reduction by a sulfite reductase-like enzyme.

Imamura S, Terashita M, Ohnuma M, Maruyama S, Minoda A, Weber AP, Inouye T, Sekine Y, Fujita Y, Omata T, Tanaka K.

Plant Cell Physiol. 2010 May;51(5):707-17. doi: 10.1093/pcp/pcq043. Epub 2010 Apr 7.

PMID:
20375110
29.

One-pot, template syntheses of a new class of metallomacrocycles with a tetraoxime cyclic skeleton.

Tashiro S, Minoda A, Yamada M, Shionoya M.

Inorg Chem. 2009 Nov 2;48(21):10093-101. doi: 10.1021/ic900993j.

PMID:
19852519
30.

Blockade of the ERK pathway markedly sensitizes tumor cells to HDAC inhibitor-induced cell death.

Ozaki K, Minoda A, Kishikawa F, Kohno M.

Biochem Biophys Res Commun. 2006 Jan 27;339(4):1171-7. Epub 2005 Dec 5.

PMID:
16338224
31.

Microarray profiling of plastid gene expression in a unicellular red alga, Cyanidioschyzon merolae.

Minoda A, Nagasawa K, Hanaoka M, Horiuchi M, Takahashi H, Tanaka K.

Plant Mol Biol. 2005 Oct;59(3):375-85.

PMID:
16235106
32.
33.

Improvement of culture conditions and evidence for nuclear transformation by homologous recombination in a red alga, Cyanidioschyzon merolae 10D.

Minoda A, Sakagami R, Yagisawa F, Kuroiwa T, Tanaka K.

Plant Cell Physiol. 2004 Jun;45(6):667-71.

PMID:
15215501
34.

Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D.

Matsuzaki M, Misumi O, Shin-I T, Maruyama S, Takahara M, Miyagishima SY, Mori T, Nishida K, Yagisawa F, Nishida K, Yoshida Y, Nishimura Y, Nakao S, Kobayashi T, Momoyama Y, Higashiyama T, Minoda A, Sano M, Nomoto H, Oishi K, Hayashi H, Ohta F, Nishizaka S, Haga S, Miura S, Morishita T, Kabeya Y, Terasawa K, Suzuki Y, Ishii Y, Asakawa S, Takano H, Ohta N, Kuroiwa H, Tanaka K, Shimizu N, Sugano S, Sato N, Nozaki H, Ogasawara N, Kohara Y, Kuroiwa T.

Nature. 2004 Apr 8;428(6983):653-7.

PMID:
15071595
35.
36.

Involvement of sulfoquinovosyl diacylglycerol in the structural integrity and heat-tolerance of photosystem II.

Sato N, Aoki M, Maru Y, Sonoike K, Minoda A, Tsuzuki M.

Planta. 2003 Jun;217(2):245-51. Epub 2003 Mar 6.

PMID:
12783332
37.

Role of sulfoquinovosyl diacylglycerol for the maintenance of photosystem II in Chlamydomonas reinhardtii.

Minoda A, Sato N, Nozaki H, Okada K, Takahashi H, Sonoike K, Tsuzuki M.

Eur J Biochem. 2002 May;269(9):2353-8. Erratum in: Eur J Biochem 2002 Jun;269(12):3093.

38.

[Public Health nurses and the future of their activities].

Minoda A.

Kango. 1965 Sep;17(9):109-27. Japanese. No abstract available.

PMID:
5174099

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