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Items: 9

1.

Quantifying and Understanding Well-to-Well Contamination in Microbiome Research.

Minich JJ, Sanders JG, Amir A, Humphrey G, Gilbert JA, Knight R.

mSystems. 2019 Jun 25;4(4). pii: e00186-19. doi: 10.1128/mSystems.00186-19.

2.

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.

Eisenhofer R, Minich JJ, Marotz C, Cooper A, Knight R, Weyrich LS.

Trends Microbiol. 2019 Feb;27(2):105-117. doi: 10.1016/j.tim.2018.11.003. Epub 2018 Nov 26. Review.

PMID:
30497919
3.

High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity.

Minich JJ, Humphrey G, Benitez RAS, Sanders J, Swafford A, Allen EE, Knight R.

mSystems. 2018 Nov 6;3(6). pii: e00166-18. doi: 10.1128/mSystems.00166-18. eCollection 2018 Nov-Dec.

4.

Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians.

Allaband C, McDonald D, Vázquez-Baeza Y, Minich JJ, Tripathi A, Brenner DA, Loomba R, Smarr L, Sandborn WJ, Schnabl B, Dorrestein P, Zarrinpar A, Knight R.

Clin Gastroenterol Hepatol. 2019 Jan;17(2):218-230. doi: 10.1016/j.cgh.2018.09.017. Epub 2018 Sep 18. Review.

5.

Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus).

Minich JJ, Zhu Q, Xu ZZ, Amir A, Ngochera M, Simwaka M, Allen EE, Zidana H, Knight R.

Microbiologyopen. 2018 Dec;7(6):e00716. doi: 10.1002/mbo3.716. Epub 2018 Aug 31.

6.

KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.

Minich JJ, Zhu Q, Janssen S, Hendrickson R, Amir A, Vetter R, Hyde J, Doty MM, Stillwell K, Benardini J, Kim JH, Allen EE, Venkateswaran K, Knight R.

mSystems. 2018 Mar 13;3(3). pii: e00218-17. doi: 10.1128/mSystems.00218-17. eCollection 2018 May-Jun.

7.

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption.

Minich JJ, Morris MM, Brown M, Doane M, Edwards MS, Michael TP, Dinsdale EA.

PLoS One. 2018 Feb 23;13(2):e0192772. doi: 10.1371/journal.pone.0192772. eCollection 2018.

8.

From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16. eCollection 2016 Mar-Apr.

9.

Improved multiple displacement amplification (iMDA) and ultraclean reagents.

Motley ST, Picuri JM, Crowder CD, Minich JJ, Hofstadler SA, Eshoo MW.

BMC Genomics. 2014 Jun 6;15:443. doi: 10.1186/1471-2164-15-443.

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