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Items: 1 to 50 of 159

1.

The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis.

Zhang L, Xu Y, Zhang X, Ma X, Zhang L, Liao Z, Zhang Q, Wan X, Cheng Y, Zhang J, Li D, Zhang L, Xu J, Tao A, Lin L, Fang P, Chen S, Qi R, Xu X, Qi J, Ming R.

Plant Biotechnol J. 2020 Jan 23. doi: 10.1111/pbi.13341. [Epub ahead of print]

2.

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane.

Cai M, Lin J, Li Z, Lin Z, Ma Y, Wang Y, Ming R.

PLoS One. 2020 Jan 16;15(1):e0227716. doi: 10.1371/journal.pone.0227716. eCollection 2020.

3.

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development.

Qin G, Liu C, Li J, Qi Y, Gao Z, Zhang X, Yi X, Pan H, Ming R, Xu Y.

Hortic Res. 2020 Jan 7;7:10. doi: 10.1038/s41438-019-0233-4. eCollection 2020.

4.

The role of cis-elements in the evolution of crassulacean acid metabolism photosynthesis.

Chen LY, Xin Y, Wai CM, Liu J, Ming R.

Hortic Res. 2020 Jan 1;7:5. doi: 10.1038/s41438-019-0229-0. eCollection 2020. Review.

5.

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple.

Zhang X, Fatima M, Zhou P, Ma Q, Ming R.

BMC Genomics. 2020 Jan 2;21(1):8. doi: 10.1186/s12864-019-6421-7.

6.

TRY plant trait database - enhanced coverage and open access.

Kattge J, Bönisch G, Díaz S, Lavorel S, Prentice IC, Leadley P, Tautenhahn S, Werner GDA, Aakala T, Abedi M, Acosta ATR, Adamidis GC, Adamson K, Aiba M, Albert CH, Alcántara JM, Alcázar C C, Aleixo I, Ali H, Amiaud B, Ammer C, Amoroso MM, Anand M, Anderson C, Anten N, Antos J, Apgaua DMG, Ashman TL, Asmara DH, Asner GP, Aspinwall M, Atkin O, Aubin I, Baastrup-Spohr L, Bahalkeh K, Bahn M, Baker T, Baker WJ, Bakker JP, Baldocchi D, Baltzer J, Banerjee A, Baranger A, Barlow J, Barneche DR, Baruch Z, Bastianelli D, Battles J, Bauerle W, Bauters M, Bazzato E, Beckmann M, Beeckman H, Beierkuhnlein C, Bekker R, Belfry G, Belluau M, Beloiu M, Benavides R, Benomar L, Berdugo-Lattke ML, Berenguer E, Bergamin R, Bergmann J, Bergmann Carlucci M, Berner L, Bernhardt-Römermann M, Bigler C, Bjorkman AD, Blackman C, Blanco C, Blonder B, Blumenthal D, Bocanegra-González KT, Boeckx P, Bohlman S, Böhning-Gaese K, Boisvert-Marsh L, Bond W, Bond-Lamberty B, Boom A, Boonman CCF, Bordin K, Boughton EH, Boukili V, Bowman DMJS, Bravo S, Brendel MR, Broadley MR, Brown KA, Bruelheide H, Brumnich F, Bruun HH, Bruy D, Buchanan SW, Bucher SF, Buchmann N, Buitenwerf R, Bunker DE, Bürger J, Burrascano S, Burslem DFRP, Butterfield BJ, Byun C, Marques M, Scalon MC, Caccianiga M, Cadotte M, Cailleret M, Camac J, Camarero JJ, Campany C, Campetella G, Campos JA, Cano-Arboleda L, Canullo R, Carbognani M, Carvalho F, Casanoves F, Castagneyrol B, Catford JA, Cavender-Bares J, Cerabolini BEL, Cervellini M, Chacón-Madrigal E, Chapin K, Chapin FS, Chelli S, Chen SC, Chen A, Cherubini P, Chianucci F, Choat B, Chung KS, Chytrý M, Ciccarelli D, Coll L, Collins CG, Conti L, Coomes D, Cornelissen JHC, Cornwell WK, Corona P, Coyea M, Craine J, Craven D, Cromsigt JPGM, Csecserits A, Cufar K, Cuntz M, da Silva AC, Dahlin KM, Dainese M, Dalke I, Dalle Fratte M, Dang-Le AT, Danihelka J, Dannoura M, Dawson S, de Beer AJ, De Frutos A, De Long JR, Dechant B, Delagrange S, Delpierre N, Derroire G, Dias AS, Diaz-Toribio MH, Dimitrakopoulos PG, Dobrowolski M, Doktor D, Dřevojan P, Dong N, Dransfield J, Dressler S, Duarte L, Ducouret E, Dullinger S, Durka W, Duursma R, Dymova O, E-Vojtkó A, Eckstein RL, Ejtehadi H, Elser J, Emilio T, Engemann K, Erfanian MB, Erfmeier A, Esquivel-Muelbert A, Esser G, Estiarte M, Domingues TF, Fagan WF, Fagúndez J, Falster DS, Fan Y, Fang J, Farris E, Fazlioglu F, Feng Y, Fernandez-Mendez F, Ferrara C, Ferreira J, Fidelis A, Finegan B, Firn J, Flowers TJ, Flynn DFB, Fontana V, Forey E, Forgiarini C, François L, Frangipani M, Frank D, Frenette-Dussault C, Freschet GT, Fry EL, Fyllas NM, Mazzochini GG, Gachet S, Gallagher R, Ganade G, Ganga F, García-Palacios P, Gargaglione V, Garnier E, Garrido JL, de Gasper AL, Gea-Izquierdo G, Gibson D, Gillison AN, Giroldo A, Glasenhardt MC, Gleason S, Gliesch M, Goldberg E, Göldel B, Gonzalez-Akre E, Gonzalez-Andujar JL, González-Melo A, González-Robles A, Graae BJ, Granda E, Graves S, Green WA, Gregor T, Gross N, Guerin GR, Günther A, Gutiérrez AG, Haddock L, Haines A, Hall J, Hambuckers A, Han W, Harrison SP, Hattingh W, Hawes JE, He T, He P, Heberling JM, Helm A, Hempel S, Hentschel J, Hérault B, Hereş AM, Herz K, Heuertz M, Hickler T, Hietz P, Higuchi P, Hipp AL, Hirons A, Hock M, Hogan JA, Holl K, Honnay O, Hornstein D, Hou E, Hough-Snee N, Hovstad KA, Ichie T, Igić B, Illa E, Isaac M, Ishihara M, Ivanov L, Ivanova L, Iversen CM, Izquierdo J, Jackson RB, Jackson B, Jactel H, Jagodzinski AM, Jandt U, Jansen S, Jenkins T, Jentsch A, Jespersen JRP, Jiang GF, Johansen JL, Johnson D, Jokela EJ, Joly CA, Jordan GJ, Joseph GS, Junaedi D, Junker RR, Justes E, Kabzems R, Kane J, Kaplan Z, Kattenborn T, Kavelenova L, Kearsley E, Kempel A, Kenzo T, Kerkhoff A, Khalil MI, Kinlock NL, Kissling WD, Kitajima K, Kitzberger T, Kjøller R, Klein T, Kleyer M, Klimešová J, Klipel J, Kloeppel B, Klotz S, Knops JMH, Kohyama T, Koike F, Kollmann J, Komac B, Komatsu K, König C, Kraft NJB, Kramer K, Kreft H, Kühn I, Kumarathunge D, Kuppler J, Kurokawa H, Kurosawa Y, Kuyah S, Laclau JP, Lafleur B, Lallai E, Lamb E, Lamprecht A, Larkin DJ, Laughlin D, Le Bagousse-Pinguet Y, le Maire G, le Roux PC, le Roux E, Lee T, Lens F, Lewis SL, Lhotsky B, Li Y, Li X, Lichstein JW, Liebergesell M, Lim JY, Lin YS, Linares JC, Liu C, Liu D, Liu U, Livingstone S, Llusià J, Lohbeck M, López-García Á, Lopez-Gonzalez G, Lososová Z, Louault F, Lukács BA, Lukeš P, Luo Y, Lussu M, Ma S, Maciel Rabelo Pereira C, Mack M, Maire V, Mäkelä A, Mäkinen H, Malhado ACM, Mallik A, Manning P, Manzoni S, Marchetti Z, Marchino L, Marcilio-Silva V, Marcon E, Marignani M, Markesteijn L, Martin A, Martínez-Garza C, Martínez-Vilalta J, Mašková T, Mason K, Mason N, Massad TJ, Masse J, Mayrose I, McCarthy J, McCormack ML, McCulloh K, McFadden IR, McGill BJ, McPartland MY, Medeiros JS, Medlyn B, Meerts P, Mehrabi Z, Meir P, Melo FPL, Mencuccini M, Meredieu C, Messier J, Mészáros I, Metsaranta J, Michaletz ST, Michelaki C, Migalina S, Milla R, Miller JED, Minden V, Ming R, Mokany K, Moles AT, Molnár A 5th, Molofsky J, Molz M, Montgomery RA, Monty A, Moravcová L, Moreno-Martínez A, Moretti M, Mori AS, Mori S, Morris D, Morrison J, Mucina L, Mueller S, Muir CD, Müller SC, Munoz F, Myers-Smith IH, Myster RW, Nagano M, Naidu S, Narayanan A, Natesan B, Negoita L, Nelson AS, Neuschulz EL, Ni J, Niedrist G, Nieto J, Niinemets Ü, Nolan R, Nottebrock H, Nouvellon Y, Novakovskiy A; Nutrient Network, Nystuen KO, O'Grady A, O'Hara K, O'Reilly-Nugent A, Oakley S, Oberhuber W, Ohtsuka T, Oliveira R, Öllerer K, Olson ME, Onipchenko V, Onoda Y, Onstein RE, Ordonez JC, Osada N, Ostonen I, Ottaviani G, Otto S, Overbeck GE, Ozinga WA, Pahl AT, Paine CET, Pakeman RJ, Papageorgiou AC, Parfionova E, Pärtel M, Patacca M, Paula S, Paule J, Pauli H, Pausas JG, Peco B, Penuelas J, Perea A, Peri PL, Petisco-Souza AC, Petraglia A, Petritan AM, Phillips OL, Pierce S, Pillar VD, Pisek J, Pomogaybin A, Poorter H, Portsmuth A, Poschlod P, Potvin C, Pounds D, Powell AS, Power SA, Prinzing A, Puglielli G, Pyšek P, Raevel V, Rammig A, Ransijn J, Ray CA, Reich PB, Reichstein M, Reid DEB, Réjou-Méchain M, de Dios VR, Ribeiro S, Richardson S, Riibak K, Rillig MC, Riviera F, Robert EMR, Roberts S, Robroek B, Roddy A, Rodrigues AV, Rogers A, Rollinson E, Rolo V, Römermann C, Ronzhina D, Roscher C, Rosell JA, Rosenfield MF, Rossi C, Roy DB, Royer-Tardif S, Rüger N, Ruiz-Peinado R, Rumpf SB, Rusch GM, Ryo M, Sack L, Saldaña A, Salgado-Negret B, Salguero-Gomez R, Santa-Regina I, Santacruz-García AC, Santos J, Sardans J, Schamp B, Scherer-Lorenzen M, Schleuning M, Schmid B, Schmidt M, Schmitt S, Schneider JV, Schowanek SD, Schrader J, Schrodt F, Schuldt B, Schurr F, Selaya Garvizu G, Semchenko M, Seymour C, Sfair JC, Sharpe JM, Sheppard CS, Sheremetiev S, Shiodera S, Shipley B, Shovon TA, Siebenkäs A, Sierra C, Silva V, Silva M, Sitzia T, Sjöman H, Slot M, Smith NG, Sodhi D, Soltis P, Soltis D, Somers B, Sonnier G, Sørensen MV, Sosinski EE Jr, Soudzilovskaia NA, Souza AF, Spasojevic M, Sperandii MG, Stan AB, Stegen J, Steinbauer K, Stephan JG, Sterck F, Stojanovic DB, Strydom T, Suarez ML, Svenning JC, Svitková I, Svitok M, Svoboda M, Swaine E, Swenson N, Tabarelli M, Takagi K, Tappeiner U, Tarifa R, Tauugourdeau S, Tavsanoglu C, Te Beest M, Tedersoo L, Thiffault N, Thom D, Thomas E, Thompson K, Thornton PE, Thuiller W, Tichý L, Tissue D, Tjoelker MG, Tng DYP, Tobias J, Török P, Tarin T, Torres-Ruiz JM, Tóthmérész B, Treurnicht M, Trivellone V, Trolliet F, Trotsiuk V, Tsakalos JL, Tsiripidis I, Tysklind N, Umehara T, Usoltsev V, Vadeboncoeur M, Vaezi J, Valladares F, Vamosi J, van Bodegom PM, van Breugel M, Van Cleemput E, van de Weg M, van der Merwe S, van der Plas F, van der Sande MT, van Kleunen M, Van Meerbeek K, Vanderwel M, Vanselow KA, Vårhammar A, Varone L, Vasquez Valderrama MY, Vassilev K, Vellend M, Veneklaas EJ, Verbeeck H, Verheyen K, Vibrans A, Vieira I, Villacís J, Violle C, Vivek P, Wagner K, Waldram M, Waldron A, Walker AP, Waller M, Walther G, Wang H, Wang F, Wang W, Watkins H, Watkins J, Weber U, Weedon JT, Wei L, Weigelt P, Weiher E, Wells AW, Wellstein C, Wenk E, Westoby M, Westwood A, White PJ, Whitten M, Williams M, Winkler DE, Winter K, Womack C, Wright IJ, Wright SJ, Wright J, Pinho BX, Ximenes F, Yamada T, Yamaji K, Yanai R, Yankov N, Yguel B, Zanini KJ, Zanne AE, Zelený D, Zhao YP, Zheng J, Zheng J, Ziemińska K, Zirbel CR, Zizka G, Zo-Bi IC, Zotz G, Wirth C.

Glob Chang Biol. 2020 Jan;26(1):119-188. doi: 10.1111/gcb.14904. Epub 2019 Dec 31.

PMID:
31891233
7.

Genome-Wide Identification and Expression Profile Analysis of WRKY Family Genes in the Autopolyploid Saccharum spontaneum.

Li Z, Hua X, Zhong W, Yuan Y, Wang Y, Wang Z, Ming R, Zhang J.

Plant Cell Physiol. 2019 Dec 12. pii: pcz227. doi: 10.1093/pcp/pcz227. [Epub ahead of print]

PMID:
31830269
8.

Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya.

Zerpa-Catanho D, Wai J, Wang ML, Yu L, Nguyen J, Ming R.

BMC Plant Biol. 2019 Dec 9;19(1):545. doi: 10.1186/s12870-019-2169-0.

9.

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.

Souza GM, Van Sluys MA, Lembke CG, Lee H, Margarido GRA, Hotta CT, Gaiarsa JW, Diniz AL, Oliveira MM, Ferreira SS, Nishiyama MY, Ten-Caten F, Ragagnin GT, Andrade PM, de Souza RF, Nicastro GG, Pandya R, Kim C, Guo H, Durham AM, Carneiro MS, Zhang J, Zhang X, Zhang Q, Ming R, Schatz MC, Davidson B, Paterson AH, Heckerman D.

Gigascience. 2019 Dec 1;8(12). pii: giz129. doi: 10.1093/gigascience/giz129.

10.

Phospholipid Component Defines Pharmacokinetic and Pharmacodynamic Properties of Synthetic High-Density Lipoproteins.

Fawaz MV, Kim SY, Li D, Ming R, Xia Z, Olsen K, Pogozheva ID, Tesmer JJG, Schwendeman A.

J Pharmacol Exp Ther. 2020 Feb;372(2):193-204. doi: 10.1124/jpet.119.257568. Epub 2019 Nov 27.

PMID:
31776208
11.

Positional cloning and characterization of the papaya diminutive mutant reveal a truncating mutation in the CpMMS19 gene.

Wang Y, Singh R, Tong E, Tang M, Zheng L, Fang H, Li R, Guo L, Song J, Srinivasan R, Sharma A, Lin L, Trujillo JA, Manshardt R, Chen LY, Ming R, Yu Q.

New Phytol. 2019 Nov 16. doi: 10.1111/nph.16325. [Epub ahead of print]

PMID:
31733154
12.

Synthetic high-density lipoprotein nanoparticles for the treatment of Niemann-Pick diseases.

Schultz ML, Fawaz MV, Azaria RD, Hollon TC, Liu EA, Kunkel TJ, Halseth TA, Krus KL, Ming R, Morin EE, McLoughlin HS, Bushart DD, Paulson HL, Shakkottai VG, Orringer DA, Schwendeman AS, Lieberman AP.

BMC Med. 2019 Nov 11;17(1):200. doi: 10.1186/s12916-019-1423-5.

13.

Auxin regulation involved in gynoecium morphogenesis of papaya flowers.

Zhou P, Fatima M, Ma X, Liu J, Ming R.

Hortic Res. 2019 Nov 1;6:119. doi: 10.1038/s41438-019-0205-8. eCollection 2019.

14.

Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya.

Wang G, Lin J, Shi Y, Chang X, Wang Y, Guo L, Wang W, Dou M, Deng Y, Ming R, Zhang J.

BMC Genomics. 2019 Oct 22;20(1):765. doi: 10.1186/s12864-019-6133-z.

15.

The bracteatus pineapple genome and domestication of clonally propagated crops.

Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, Lin Z, Zhang J, Huang L, Wang H, Hwa TY, Kao SM, Choi JY, Sharma A, Song J, Wang L, Yim WC, Cushman JC, Paull RE, Matsumoto T, Qin Y, Wu Q, Wang J, Yu Q, Wu J, Zhang S, Boches P, Tung CW, Wang ML, Coppens d'Eeckenbrugge G, Sanewski GM, Purugganan MD, Schatz MC, Bennetzen JL, Lexer C, Ming R.

Nat Genet. 2019 Oct;51(10):1549-1558. doi: 10.1038/s41588-019-0506-8. Epub 2019 Sep 30.

PMID:
31570895
16.

Two Well-Compatible Acceptors with Efficient Energy Transfer Enable Ternary Organic Photovoltaics Exhibiting a 13.36% Efficiency.

Wang J, Ma X, Wang J, Ming R, An Q, Zhang J, Yang C, Zhang F.

Small. 2019 Oct;15(41):e1902602. doi: 10.1002/smll.201902602. Epub 2019 Aug 21.

PMID:
31433122
17.

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data.

Zhang X, Zhang S, Zhao Q, Ming R, Tang H.

Nat Plants. 2019 Aug;5(8):833-845. doi: 10.1038/s41477-019-0487-8. Epub 2019 Aug 5.

PMID:
31383970
18.

Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening.

Zhou D, Shen Y, Zhou P, Fatima M, Lin J, Yue J, Zhang X, Chen LY, Ming R.

Hortic Res. 2019 Jun 22;6:80. doi: 10.1038/s41438-019-0162-2. eCollection 2019.

19.

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication.

Zhuang W, Chen H, Yang M, Wang J, Pandey MK, Zhang C, Chang WC, Zhang L, Zhang X, Tang R, Garg V, Wang X, Tang H, Chow CN, Wang J, Deng Y, Wang D, Khan AW, Yang Q, Cai T, Bajaj P, Wu K, Guo B, Zhang X, Li J, Liang F, Hu J, Liao B, Liu S, Chitikineni A, Yan H, Zheng Y, Shan S, Liu Q, Xie D, Wang Z, Khan SA, Ali N, Zhao C, Li X, Luo Z, Zhang S, Zhuang R, Peng Z, Wang S, Mamadou G, Zhuang Y, Zhao Z, Yu W, Xiong F, Quan W, Yuan M, Li Y, Zou H, Xia H, Zha L, Fan J, Yu J, Xie W, Yuan J, Chen K, Zhao S, Chu W, Chen Y, Sun P, Meng F, Zhuo T, Zhao Y, Li C, He G, Zhao Y, Wang C, Kavikishor PB, Pan RL, Paterson AH, Wang X, Ming R, Varshney RK.

Nat Genet. 2019 May;51(5):865-876. doi: 10.1038/s41588-019-0402-2. Epub 2019 May 1.

PMID:
31043757
20.

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum.

Wang Y, Hua X, Xu J, Chen Z, Fan T, Zeng Z, Wang H, Hour AL, Yu Q, Ming R, Zhang J.

BMC Genomics. 2019 Jan 24;20(1):83. doi: 10.1186/s12864-019-5437-3.

21.

Exploring the differential mechanisms of carotenoid biosynthesis in the yellow peel and red flesh of papaya.

Shen YH, Yang FY, Lu BG, Zhao WW, Jiang T, Feng L, Chen XJ, Ming R.

BMC Genomics. 2019 Jan 16;20(1):49. doi: 10.1186/s12864-018-5388-0.

22.

ERF109 of trifoliate orange (Poncirus trifoliata (L.) Raf.) contributes to cold tolerance by directly regulating expression of Prx1 involved in antioxidative process.

Wang M, Dai W, Du J, Ming R, Dahro B, Liu JH.

Plant Biotechnol J. 2019 Jul;17(7):1316-1332. doi: 10.1111/pbi.13056. Epub 2019 Jan 4.

23.

Designing an asymmetrical isomer to promote the LUMO energy level and molecular packing of a non-fullerene acceptor for polymer solar cells with 12.6% efficiency.

Gao W, An Q, Zhong C, Luo Z, Ming R, Zhang M, Zou Y, Liu F, Zhang F, Yang C.

Chem Sci. 2018 Aug 20;9(42):8142-8149. doi: 10.1039/c8sc02018c. eCollection 2018 Nov 14.

24.

Development of a flow-through USP 4 apparatus drug release assay for the evaluation of amphotericin B liposome.

Tang J, Srinivasan S, Yuan W, Ming R, Liu Y, Dai Z, Noble CO, Hayes ME, Zheng N, Jiang W, Szoka FC, Schwendeman A.

Eur J Pharm Biopharm. 2019 Jan;134:107-116. doi: 10.1016/j.ejpb.2018.11.010. Epub 2018 Nov 24.

PMID:
30481559
25.

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Dec;50(12):1754. doi: 10.1038/s41588-018-0293-7.

PMID:
30425353
26.

New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics.

Hu W, Hua X, Zhang Q, Wang J, Shen Q, Zhang X, Wang K, Yu Q, Lin YR, Ming R, Zhang J.

BMC Plant Biol. 2018 Nov 7;18(1):270. doi: 10.1186/s12870-018-1495-y.

27.

Comparative Analysis of Homologous Sequences of Saccharum officinarum and Saccharum spontaneum Reveals Independent Polyploidization Events.

Sharma A, Song J, Lin Q, Singh R, Ramos N, Wang K, Zhang J, Ming R, Yu Q.

Front Plant Sci. 2018 Sep 25;9:1414. doi: 10.3389/fpls.2018.01414. eCollection 2018.

28.

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Nov;50(11):1565-1573. doi: 10.1038/s41588-018-0237-2. Epub 2018 Oct 8. Erratum in: Nat Genet. 2018 Dec;50(12):1754.

PMID:
30297971
29.

Comparison of the Mitochondrial Genome Sequences of Six Annulohypoxylon stygium Isolates Suggests Short Fragment Insertions as a Potential Factor Leading to Larger Genomic Size.

Deng Y, Hsiang T, Li S, Lin L, Wang Q, Chen Q, Xie B, Ming R.

Front Microbiol. 2018 Sep 10;9:2079. doi: 10.3389/fmicb.2018.02079. eCollection 2018.

30.

PGD: Pineapple Genomics Database.

Xu H, Yu Q, Shi Y, Hua X, Tang H, Yang L, Ming R, Zhang J.

Hortic Res. 2018 Sep 17;5:66. doi: 10.1038/s41438-018-0078-2. eCollection 2018.

31.

Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a 'sweet' crop with 'bitter' genomes.

Yang X, Song J, Todd J, Peng Z, Paudel D, Luo Z, Ma X, You Q, Hanson E, Zhao Z, Zhao Y, Zhang J, Ming R, Wang J.

Plant Biotechnol J. 2019 Feb;17(2):488-498. doi: 10.1111/pbi.12992. Epub 2018 Aug 29.

32.

Development of an X-specific marker and identification of YY individuals in spinach.

Wadlington WH, Ming R.

Theor Appl Genet. 2018 Sep;131(9):1987-1994. doi: 10.1007/s00122-018-3127-1. Epub 2018 Jul 3.

PMID:
29971471
33.

Diversification and independent domestication of Asian and European pears.

Wu J, Wang Y, Xu J, Korban SS, Fei Z, Tao S, Ming R, Tai S, Khan AM, Postman JD, Gu C, Yin H, Zheng D, Qi K, Li Y, Wang R, Deng CH, Kumar S, Chagné D, Li X, Wu J, Huang X, Zhang H, Xie Z, Li X, Zhang M, Li Y, Yue Z, Fang X, Li J, Li L, Jin C, Qin M, Zhang J, Wu X, Ke Y, Wang J, Yang H, Zhang S.

Genome Biol. 2018 Jun 11;19(1):77. doi: 10.1186/s13059-018-1452-y.

34.

Recent polyploidization events in three Saccharum founding species.

Zhang J, Zhang Q, Li L, Tang H, Zhang Q, Chen Y, Arrow J, Zhang X, Wang A, Miao C, Ming R.

Plant Biotechnol J. 2019 Jan;17(1):264-274. doi: 10.1111/pbi.12962. Epub 2018 Jul 24.

35.

Differential methylation and expression of HUA1 ortholog in three sex types of papaya.

Liu J, Chatham L, Aryal R, Yu Q, Ming R.

Plant Sci. 2018 Jul;272:99-106. doi: 10.1016/j.plantsci.2018.04.001. Epub 2018 Apr 5.

PMID:
29807610
36.

Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics.

Orozco-Arias S, Liu J, Tabares-Soto R, Ceballos D, Silva Domingues D, Garavito A, Ming R, Guyot R.

Biology (Basel). 2018 May 25;7(2). pii: E32. doi: 10.3390/biology7020032.

37.

Asymmetrical Ladder-Type Donor-Induced Polar Small Molecule Acceptor to Promote Fill Factors Approaching 77% for High-Performance Nonfullerene Polymer Solar Cells.

Gao W, Zhang M, Liu T, Ming R, An Q, Wu K, Xie D, Luo Z, Zhong C, Liu F, Zhang F, Yan H, Yang C.

Adv Mater. 2018 Jun;30(26):e1800052. doi: 10.1002/adma.201800052. Epub 2018 May 15.

PMID:
29766573
38.

Development and Applications of Chromosome-Specific Cytogenetic BAC-FISH Probes in S. spontaneum.

Dong G, Shen J, Zhang Q, Wang J, Yu Q, Ming R, Wang K, Zhang J.

Front Plant Sci. 2018 Feb 26;9:218. doi: 10.3389/fpls.2018.00218. eCollection 2018.

39.

Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane.

Singh R, Jones T, Wai CM, Jifon J, Nagai C, Ming R, Yu Q.

Sci Rep. 2018 Mar 13;8(1):4415. doi: 10.1038/s41598-018-22798-5.

40.

Chromosome Nomenclature and Cytological Characterization of Sacred Lotus.

Meng Z, Hu X, Zhang Z, Li Z, Lin Q, Yang M, Yang P, Ming R, Yu Q, Wang K.

Cytogenet Genome Res. 2017;153(4):223-231. doi: 10.1159/000486777. Epub 2018 Feb 14.

PMID:
29439256
41.

Papain-like cysteine proteases in Carica papaya: lineage-specific gene duplication and expansion.

Liu J, Sharma A, Niewiara MJ, Singh R, Ming R, Yu Q.

BMC Genomics. 2018 Jan 6;19(1):26. doi: 10.1186/s12864-017-4394-y.

42.

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.

Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J, Heyduk K, Goodstein DM, Guo HB, Moseley RC, Fitzek E, Jawdy S, Zhang Z, Xie M, Hartwell J, Grimwood J, Abraham PE, Mewalal R, Beltrán JD, Boxall SF, Dever LV, Palla KJ, Albion R, Garcia T, Mayer JA, Don Lim S, Man Wai C, Peluso P, Van Buren R, De Paoli HC, Borland AM, Guo H, Chen JG, Muchero W, Yin Y, Jacobson DA, Tschaplinski TJ, Hettich RL, Ming R, Winter K, Leebens-Mack JH, Smith JAC, Cushman JC, Schmutz J, Tuskan GA.

Nat Commun. 2017 Dec 1;8(1):1899. doi: 10.1038/s41467-017-01491-7.

43.

Growth Inhibition Effect and Validation of Stable Expressed Reference Genes for Near-Infrared Photothermal Therapy Mediated by Gold Nanoflower Particles on Human Tongue Carcinoma Tca-8113 Cells.

Wenzhi S, Dezhou W, Ming R, Yingzi L, Zhenzhen H, Chen W, Wanzhong Y, Qiwei Y, Wensheng Y.

J Biomed Nanotechnol. 2017 Dec 1;13(9):1158-1167. doi: 10.1166/jbn.2017.2410.

PMID:
31251148
44.

Effect of Synthetic High Density Lipoproteins Modification with Polyethylene Glycol on Pharmacokinetics and Pharmacodynamics.

Li D, Fawaz MV, Morin EE, Ming R, Sviridov D, Tang J, Ackermann R, Olsen K, Remaley AT, Schwendeman A.

Mol Pharm. 2018 Jan 2;15(1):83-96. doi: 10.1021/acs.molpharmaceut.7b00734. Epub 2017 Nov 29.

45.

Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population.

Wai CM, Zhang J, Jones TC, Nagai C, Ming R.

BMC Genomics. 2017 Oct 11;18(1):773. doi: 10.1186/s12864-017-4158-8.

46.

Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.

Sharma A, Wai CM, Ming R, Yu Q.

Genome Biol Evol. 2017 Sep 1;9(9):2170-2190. doi: 10.1093/gbe/evx161.

47.

Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq.

Shen YH, Lu BG, Feng L, Yang FY, Geng JJ, Ming R, Chen XJ.

BMC Genomics. 2017 Aug 31;18(1):671. doi: 10.1186/s12864-017-4072-0.

48.

PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae.

Bao J, Chen M, Zhong Z, Tang W, Lin L, Zhang X, Jiang H, Zhang D, Miao C, Tang H, Zhang J, Lu G, Ming R, Norvienyeku J, Wang B, Wang Z.

Mol Plant. 2017 Nov 6;10(11):1465-1468. doi: 10.1016/j.molp.2017.08.008. Epub 2017 Aug 31. No abstract available.

49.

A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts.

Zeng F, Lian X, Zhang G, Yu X, Bradley CA, Ming R.

Genom Data. 2017 Jul 8;13:54-63. doi: 10.1016/j.gdata.2017.07.007. eCollection 2017 Sep.

50.

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple.

Wai CM, VanBuren R, Zhang J, Huang L, Miao W, Edger PP, Yim WC, Priest HD, Meyers BC, Mockler T, Smith JAC, Cushman JC, Ming R.

Plant J. 2017 Oct;92(1):19-30. doi: 10.1111/tpj.13630. Epub 2017 Aug 21.

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