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Items: 20

1.

Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.

Ando T, Matsuda T, Goto K, Hara K, Ito A, Hirata J, Yatomi J, Kajitani R, Okuno M, Yamaguchi K, Kobayashi M, Takano T, Minakuchi Y, Seki M, Suzuki Y, Yano K, Itoh T, Shigenobu S, Toyoda A, Niimi T.

Nat Commun. 2018 Sep 21;9(1):3843. doi: 10.1038/s41467-018-06116-1.

PMID:
30242156
2.

Endoribonuclease ENDU-2 regulates multiple traits including cold tolerance via cell autonomous and nonautonomous controls in Caenorhabditis elegans.

Ujisawa T, Ohta A, Ii T, Minakuchi Y, Toyoda A, Ii M, Kuhara A.

Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):8823-8828. doi: 10.1073/pnas.1808634115. Epub 2018 Aug 13.

PMID:
30104389
3.

Exploring the Limits and Causes of Plastid Genome Expansion in Volvocine Green Algae.

Gaouda H, Hamaji T, Yamamoto K, Kawai-Toyooka H, Suzuki M, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Nozaki H, Smith DR.

Genome Biol Evol. 2018 Sep 1;10(9):2248-2254. doi: 10.1093/gbe/evy175.

4.

Molecular Characterization of Eye Pigmentation-Related ABC Transporter Genes in the Ladybird Beetle Harmonia axyridis Reveals Striking Gene Duplication of the white Gene.

Tsuji T, Gotoh H, Morita S, Hirata J, Minakuchi Y, Yaginuma T, Toyoda A, Niimi T.

Zoolog Sci. 2018 Jun;35(3):260-267. doi: 10.2108/zs170166.

PMID:
29882491
5.

Mining of the Uncharacterized Cytochrome P450 Genes Involved in Alkaloid Biosynthesis in California Poppy Using a Draft Genome Sequence.

Hori K, Yamada Y, Purwanto R, Minakuchi Y, Toyoda A, Hirakawa H, Sato F.

Plant Cell Physiol. 2018 Feb 1;59(2):222-233. doi: 10.1093/pcp/pcx210.

6.

Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans.

Arai R, Sugawara T, Sato Y, Minakuchi Y, Toyoda A, Nabeshima K, Kimura H, Kimura A.

Sci Rep. 2017 Jun 16;7(1):3631. doi: 10.1038/s41598-017-03483-5.

7.

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y.

Nat Commun. 2016 Nov 8;7:13295. doi: 10.1038/ncomms13295.

8.

Natural variations of cold tolerance and temperature acclimation in Caenorhabditis elegans.

Okahata M, Ohta A, Mizutani H, Minakuchi Y, Toyoda A, Kuhara A.

J Comp Physiol B. 2016 Dec;186(8):985-998. Epub 2016 Jun 18.

9.

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.

Hashimoto T, Horikawa DD, Saito Y, Kuwahara H, Kozuka-Hata H, Shin-I T, Minakuchi Y, Ohishi K, Motoyama A, Aizu T, Enomoto A, Kondo K, Tanaka S, Hara Y, Koshikawa S, Sagara H, Miura T, Yokobori SI, Miyagawa K, Suzuki Y, Kubo T, Oyama M, Kohara Y, Fujiyama A, Arakawa K, Katayama T, Toyoda A, Kunieda T.

Nat Commun. 2016 Sep 20;7:12808. doi: 10.1038/ncomms12808.

10.

The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.

Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ.

Nat Commun. 2016 Apr 22;7:11370. doi: 10.1038/ncomms11370.

11.

Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice.

Uchimura A, Higuchi M, Minakuchi Y, Ohno M, Toyoda A, Fujiyama A, Miura I, Wakana S, Nishino J, Yagi T.

Genome Res. 2015 Aug;25(8):1125-34. doi: 10.1101/gr.186148.114. Epub 2015 Jun 30.

12.

Genomic and phenotypic characterization of a wild medaka population: towards the establishment of an isogenic population genetic resource in fish.

Spivakov M, Auer TO, Peravali R, Dunham I, Dolle D, Fujiyama A, Toyoda A, Aizu T, Minakuchi Y, Loosli F, Naruse K, Birney E, Wittbrodt J.

G3 (Bethesda). 2014 Mar 20;4(3):433-45. doi: 10.1534/g3.113.008722.

13.

Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum).

Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K.

Plant Cell Physiol. 2014 Feb;55(2):445-54. doi: 10.1093/pcp/pct181. Epub 2013 Dec 5.

PMID:
24319074
14.

Comparison of Genomic and Epigenomic Expression in Monozygotic Twins Discordant for Rett Syndrome.

Miyake K, Yang C, Minakuchi Y, Ohori K, Soutome M, Hirasawa T, Kazuki Y, Adachi N, Suzuki S, Itoh M, Goto Y, Andoh T, Kurosawa H, Oshimura M, Sasaki M, Toyoda A, Kubota T.

PLoS One. 2013 Jun 21;8(6):e66729. doi: 10.1371/journal.pone.0066729. Print 2013. Erratum in: PLoS One. 2014;9(4):e94737.

15.

Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.

Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M, Kawashima K, Minami C, Muraki A, Nakazaki N, Takahashi C, Nakayama S, Kishida Y, Kohara M, Yamada M, Tsuruoka H, Sasamoto S, Tabata S, Aizu T, Toyoda A, Shin-i T, Minakuchi Y, Kohara Y, Fujiyama A, Tsuchimoto S, Kajiyama S, Makigano E, Ohmido N, Shibagaki N, Cartagena JA, Wada N, Kohinata T, Atefeh A, Yuasa S, Matsunaga S, Fukui K.

DNA Res. 2011 Feb;18(1):65-76. doi: 10.1093/dnares/dsq030. Epub 2010 Dec 13.

16.

Atelocollagen-mediated systemic DDS for nucleic acid medicines.

Hanai K, Takeshita F, Honma K, Nagahara S, Maeda M, Minakuchi Y, Sano A, Ochiya T.

Ann N Y Acad Sci. 2006 Oct;1082:9-17.

PMID:
17145919
17.

Efficient delivery of small interfering RNA to bone-metastatic tumors by using atelocollagen in vivo.

Takeshita F, Minakuchi Y, Nagahara S, Honma K, Sasaki H, Hirai K, Teratani T, Namatame N, Yamamoto Y, Hanai K, Kato T, Sano A, Ochiya T.

Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12177-82. Epub 2005 Aug 9.

18.

Atelocollagen-mediated synthetic small interfering RNA delivery for effective gene silencing in vitro and in vivo.

Minakuchi Y, Takeshita F, Kosaka N, Sasaki H, Yamamoto Y, Kouno M, Honma K, Nagahara S, Hanai K, Sano A, Kato T, Terada M, Ochiya T.

Nucleic Acids Res. 2004 Jul 22;32(13):e109.

19.

Potential of atelocollagen-mediated systemic antisense therapeutics for inflammatory disease.

Hanai K, Kurokawa T, Minakuchi Y, Maeda M, Nagahara S, Miyata T, Ochiya T, Sano A.

Hum Gene Ther. 2004 Mar;15(3):263-72.

PMID:
15018735
20.

SPI: a tool for incorporating gene expression data into a four-dimensional database of Caenorhabditis elegans embryogenesis.

Minakuchi Y, Ito M, Kohara Y.

Bioinformatics. 2004 May 1;20(7):1097-109. Epub 2004 Feb 5.

PMID:
14764544

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