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Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults.

Westreich ST, Salcedo J, Durbin-Johnson B, Smilowitz JT, Korf I, Mills DA, Barile D, Lemay DG.

J Nutr Biochem. 2020 Jan 17;79:108340. doi: 10.1016/j.jnutbio.2020.108340. [Epub ahead of print]


Resident microbes of lactation rooms and daycares.

Taft DH, Akre S, Madrid N, Knoesen A, Mills DA, Lewis ZT.

PeerJ. 2019 Dec 13;7:e8168. doi: 10.7717/peerj.8168. eCollection 2019.


The fecal resistome of dairy cattle is associated with diet during nursing.

Liu J, Taft DH, Maldonado-Gomez MX, Johnson D, Treiber ML, Lemay DG, DePeters EJ, Mills DA.

Nat Commun. 2019 Sep 27;10(1):4406. doi: 10.1038/s41467-019-12111-x.


Fetal exposure to maternal inflammation interrupts murine intestinal development and increases susceptibility to neonatal intestinal injury.

Elgin TG, Fricke EM, Gong H, Reese J, Mills DA, Kalantera KM, Underwood MA, McElroy SJ.

Dis Model Mech. 2019 Oct 21;12(10). pii: dmm040808. doi: 10.1242/dmm.040808.


The developing gut-lung axis: postnatal growth restriction, intestinal dysbiosis, and pulmonary hypertension in a rodent model.

Wedgwood S, Warford C, Agvatisiri SR, Thai PN, Chiamvimonvat N, Kalanetra KM, Lakshminrusimha S, Steinhorn RH, Mills DA, Underwood MA.

Pediatr Res. 2019 Sep 19. doi: 10.1038/s41390-019-0578-2. [Epub ahead of print]


Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition.

Cowardin CA, Ahern PP, Kung VL, Hibberd MC, Cheng J, Guruge JL, Sundaresan V, Head RD, Barile D, Mills DA, Barratt MJ, Huq S, Ahmed T, Gordon JI.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11988-11996. doi: 10.1073/pnas.1821770116. Epub 2019 May 28.


Neonatal Vitamin A Supplementation and Vitamin A Status Are Associated with Gut Microbiome Composition in Bangladeshi Infants in Early Infancy and at 2 Years of Age.

Huda MN, Ahmad SM, Kalanetra KM, Taft DH, Alam MJ, Khanam A, Raqib R, Underwood MA, Mills DA, Stephensen CB.

J Nutr. 2019 Jun 1;149(6):1075-1088. doi: 10.1093/jn/nxz034.


Bacterial colonization and antimicrobial resistance genes in neonatal enteral feeding tubes.

Taft DH, Salinero LK, Vongbhavit K, Kalanetra KM, Masarweh C, Yu A, Underwood MA, Mills DA.

FEMS Microbiol Ecol. 2019 Apr 1;95(4). pii: fiz039. doi: 10.1093/femsec/fiz039.


Bifidobacterium Abundance in Early Infancy and Vaccine Response at 2 Years of Age.

Huda MN, Ahmad SM, Alam MJ, Khanam A, Kalanetra KM, Taft DH, Raqib R, Underwood MA, Mills DA, Stephensen CB.

Pediatrics. 2019 Feb;143(2). pii: e20181489. doi: 10.1542/peds.2018-1489.


Pilot study of probiotic/colostrum supplementation on gut function in children with autism and gastrointestinal symptoms.

Sanctuary MR, Kain JN, Chen SY, Kalanetra K, Lemay DG, Rose DR, Yang HT, Tancredi DJ, German JB, Slupsky CM, Ashwood P, Mills DA, Smilowitz JT, Angkustsiri K.

PLoS One. 2019 Jan 9;14(1):e0210064. doi: 10.1371/journal.pone.0210064. eCollection 2019.


Dentists' Perceptions of Their Peer Learning Experiences in Dental School and Effects on Practice.

Roberts EP, Mills DA, Stein AF.

J Dent Educ. 2018 Nov;82(11):1185-1193. doi: 10.21815/JDE.018.123.


Loss of murine Paneth cell function alters the immature intestinal microbiome and mimics changes seen in neonatal necrotizing enterocolitis.

Lueschow SR, Stumphy J, Gong H, Kern SL, Elgin TG, Underwood MA, Kalanetra KM, Mills DA, Wong MH, Meyerholz DK, Good M, McElroy SJ.

PLoS One. 2018 Oct 1;13(10):e0204967. doi: 10.1371/journal.pone.0204967. eCollection 2018.


Bifidobacterial Dominance of the Gut in Early Life and Acquisition of Antimicrobial Resistance.

Taft DH, Liu J, Maldonado-Gomez MX, Akre S, Huda MN, Ahmad SM, Stephensen CB, Mills DA.

mSphere. 2018 Sep 26;3(5). pii: e00441-18. doi: 10.1128/mSphere.00441-18.


The effect of synbiotics Bifidobacterium infantis and milk oligosaccharides on shaping gut microbiota community structure and NASH treatment.

Jena PK, Sheng L, Nagar N, Wu C, Barile D, Mills DA, Wan YY.

Data Brief. 2018 May 24;19:1025-1029. doi: 10.1016/j.dib.2018.05.127. eCollection 2018 Aug.


Synbiotics Bifidobacterium infantis and milk oligosaccharides are effective in reversing cancer-prone nonalcoholic steatohepatitis using western diet-fed FXR knockout mouse models.

Jena PK, Sheng L, Nagar N, Wu C, Barile D, Mills DA, Wan YY.

J Nutr Biochem. 2018 Jul;57:246-254. doi: 10.1016/j.jnutbio.2018.04.007. Epub 2018 Apr 25.


SAMSA2: a standalone metatranscriptome analysis pipeline.

Westreich ST, Treiber ML, Mills DA, Korf I, Lemay DG.

BMC Bioinformatics. 2018 May 21;19(1):175. doi: 10.1186/s12859-018-2189-z.


Effects of triclosan in breast milk on the infant fecal microbiome.

Bever CS, Rand AA, Nording M, Taft D, Kalanetra KM, Mills DA, Breck MA, Smilowitz JT, German JB, Hammock BD.

Chemosphere. 2018 Jul;203:467-473. doi: 10.1016/j.chemosphere.2018.03.186. Epub 2018 Mar 28.


Milk Glycans and Their Interaction with the Infant-Gut Microbiota.

Kirmiz N, Robinson RC, Shah IM, Barile D, Mills DA.

Annu Rev Food Sci Technol. 2018 Mar 25;9:429-450. doi: 10.1146/annurev-food-030216-030207. Review.


Lipopolysaccharide-induced maternal inflammation induces direct placental injury without alteration in placental blood flow and induces a secondary fetal intestinal injury that persists into adulthood.

Fricke EM, Elgin TG, Gong H, Reese J, Gibson-Corley KN, Weiss RM, Zimmerman K, Bowdler NC, Kalantera KM, Mills DA, Underwood MA, McElroy SJ.

Am J Reprod Immunol. 2018 May;79(5):e12816. doi: 10.1111/aji.12816. Epub 2018 Jan 25.


Flavonoids and the gastrointestinal tract: Local and systemic effects.

Oteiza PI, Fraga CG, Mills DA, Taft DH.

Mol Aspects Med. 2018 Jun;61:41-49. doi: 10.1016/j.mam.2018.01.001. Epub 2018 Jan 12. Review.


Persistence of Supplemented Bifidobacterium longum subsp. infantis EVC001 in Breastfed Infants.

Frese SA, Hutton AA, Contreras LN, Shaw CA, Palumbo MC, Casaburi G, Xu G, Davis JCC, Lebrilla CB, Henrick BM, Freeman SL, Barile D, German JB, Mills DA, Smilowitz JT, Underwood MA.

mSphere. 2017 Dec 6;2(6). pii: e00501-17. doi: 10.1128/mSphere.00501-17. eCollection 2017 Nov-Dec.


(-)-Epicatechin protects the intestinal barrier from high fat diet-induced permeabilization: Implications for steatosis and insulin resistance.

Cremonini E, Wang Z, Bettaieb A, Adamo AM, Daveri E, Mills DA, Kalanetra KM, Haj FG, Karakas S, Oteiza PI.

Redox Biol. 2018 Apr;14:588-599. doi: 10.1016/j.redox.2017.11.002. Epub 2017 Nov 7.


School-Based Influenza Vaccination: Health and Economic Impact of Maine's 2009 Influenza Vaccination Program.

Basurto-Dávila R, Meltzer MI, Mills DA, Beeler Asay GR, Cho BH, Graitcer SB, Dube NL, Thompson MG, Patel SA, Peasah SK, Ferdinands JM, Gargiullo P, Messonnier M, Shay DK.

Health Serv Res. 2017 Dec;52 Suppl 2:2307-2330. doi: 10.1111/1475-6773.12786.


Digestion of Human Milk Oligosaccharides by Bifidobacterium breve in the Premature Infant.

Underwood MA, Davis JCC, Kalanetra KM, Gehlot S, Patole S, Tancredi DJ, Mills DA, Lebrilla CB, Simmer K.

J Pediatr Gastroenterol Nutr. 2017 Oct;65(4):449-455. doi: 10.1097/MPG.0000000000001590.


Hepatic inflammation caused by dysregulated bile acid synthesis is reversible by butyrate supplementation.

Sheng L, Jena PK, Hu Y, Liu HX, Nagar N, Kalanetra KM, French SW, French SW, Mills DA, Wan YY.

J Pathol. 2017 Dec;243(4):431-441. doi: 10.1002/path.4983. Epub 2017 Nov 1.


Effect of barley supplementation on the fecal microbiota, caecal biochemistry, and key biomarkers of obesity and inflammation in obese db/db mice.

Garcia-Mazcorro JF, Mills DA, Murphy K, Noratto G.

Eur J Nutr. 2018 Oct;57(7):2513-2528. doi: 10.1007/s00394-017-1523-y. Epub 2017 Aug 16.


Probiotic nomenclature matters redux: confusion on Bifidobacterium longum subsp. infantis taxonomy persists.

Mills DA.

Curr Med Res Opin. 2017 Nov;33(11):2097. doi: 10.1080/03007995.2017.1359153. Epub 2017 Aug 16. No abstract available.


Western Diet-Induced Dysbiosis in Farnesoid X Receptor Knockout Mice Causes Persistent Hepatic Inflammation after Antibiotic Treatment.

Jena PK, Sheng L, Liu HX, Kalanetra KM, Mirsoian A, Murphy WJ, French SW, Krishnan VV, Mills DA, Wan YY.

Am J Pathol. 2017 Aug;187(8):1800-1813. doi: 10.1016/j.ajpath.2017.04.019. Epub 2017 Jul 12. Erratum in: Am J Pathol. 2017 Nov;187(11):2617.


Tolerability and safety of the intake of bovine milk oligosaccharides extracted from cheese whey in healthy human adults.

Smilowitz JT, Lemay DG, Kalanetra KM, Chin EL, Zivkovic AM, Breck MA, German JB, Mills DA, Slupsky C, Barile D.

J Nutr Sci. 2017 Feb 20;6:e6. doi: 10.1017/jns.2017.2. eCollection 2017.


Gender Differences in Bile Acids and Microbiota in Relationship with Gender Dissimilarity in Steatosis Induced by Diet and FXR Inactivation.

Sheng L, Jena PK, Liu HX, Kalanetra KM, Gonzalez FJ, French SW, Krishnan VV, Mills DA, Wan YY.

Sci Rep. 2017 May 11;7(1):1748. doi: 10.1038/s41598-017-01576-9.


Enterocyte glycosylation is responsive to changes in extracellular conditions: implications for membrane functions.

Park D, Xu G, Barboza M, Shah IM, Wong M, Raybould H, Mills DA, Lebrilla CB.

Glycobiology. 2017 Sep 1;27(9):847-860. doi: 10.1093/glycob/cwx041.


Differential Establishment of Bifidobacteria in the Breastfed Infant Gut.

Lewis ZT, Mills DA.

Nestle Nutr Inst Workshop Ser. 2017;88:149-159. doi: 10.1159/000455399. Epub 2017 Mar 27. Review.


Prebiotic milk oligosaccharides prevent development of obese phenotype, impairment of gut permeability, and microbial dysbiosis in high fat-fed mice.

Hamilton MK, Ronveaux CC, Rust BM, Newman JW, Hawley M, Barile D, Mills DA, Raybould HE.

Am J Physiol Gastrointest Liver Physiol. 2017 May 1;312(5):G474-G487. doi: 10.1152/ajpgi.00427.2016. Epub 2017 Mar 9.


The Fecal Microbial Community of Breast-fed Infants from Armenia and Georgia.

Lewis ZT, Sidamonidze K, Tsaturyan V, Tsereteli D, Khachidze N, Pepoyan A, Zhgenti E, Tevzadze L, Manvelyan A, Balayan M, Imnadze P, Torok T, Lemay DG, Mills DA.

Sci Rep. 2017 Feb 2;7:40932. doi: 10.1038/srep40932.


Bovine milk oligosaccharides decrease gut permeability and improve inflammation and microbial dysbiosis in diet-induced obese mice.

Boudry G, Hamilton MK, Chichlowski M, Wickramasinghe S, Barile D, Kalanetra KM, Mills DA, Raybould HE.

J Dairy Sci. 2017 Apr;100(4):2471-2481. doi: 10.3168/jds.2016-11890. Epub 2017 Jan 26.


Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides and Infant Gut Microbiota.

Davis JC, Lewis ZT, Krishnan S, Bernstein RM, Moore SE, Prentice AM, Mills DA, Lebrilla CB, Zivkovic AM.

Sci Rep. 2017 Jan 12;7:40466. doi: 10.1038/srep40466.


Power of Peers: Students' Perceptions of Pairing in Clinical Dental Education.

Mills DA, Hammer CL, Murad A.

J Dent Educ. 2017 Jan;81(1):36-43.


A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596.

Garrido D, Ruiz-Moyano S, Kirmiz N, Davis JC, Totten SM, Lemay DG, Ugalde JA, German JB, Lebrilla CB, Mills DA.

Sci Rep. 2016 Oct 19;6:35045. doi: 10.1038/srep35045.


SAMSA: a comprehensive metatranscriptome analysis pipeline.

Westreich ST, Korf I, Mills DA, Lemay DG.

BMC Bioinformatics. 2016 Sep 29;17(1):399.


Characterization of porcine milk oligosaccharides during early lactation and their relation to the fecal microbiome.

Salcedo J, Frese SA, Mills DA, Barile D.

J Dairy Sci. 2016 Oct;99(10):7733-7743. doi: 10.3168/jds.2016-10966. Epub 2016 Aug 10.


Dietary supplementation with Bifidobacterium longum subsp. infantis (B. infantis) in healthy breastfed infants: study protocol for a randomised controlled trial.

Awasthi S, Wilken R, Patel F, German JB, Mills DA, Lebrilla CB, Kim K, Freeman SL, Smilowitz JT, Armstrong AW, Maverakis E.

Trials. 2016 Jul 22;17(1):340. doi: 10.1186/s13063-016-1467-1.


Identification of Oligosaccharides in Feces of Breast-fed Infants and Their Correlation with the Gut Microbial Community.

Davis JC, Totten SM, Huang JO, Nagshbandi S, Kirmiz N, Garrido DA, Lewis ZT, Wu LD, Smilowitz JT, German JB, Mills DA, Lebrilla CB.

Mol Cell Proteomics. 2016 Sep;15(9):2987-3002. doi: 10.1074/mcp.M116.060665. Epub 2016 Jul 19.


A microbial perspective of human developmental biology.

Charbonneau MR, Blanton LV, DiGiulio DB, Relman DA, Lebrilla CB, Mills DA, Gordon JI.

Nature. 2016 Jul 7;535(7610):48-55. doi: 10.1038/nature18845.


Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics.

Bokulich NA, Collins TS, Masarweh C, Allen G, Heymann H, Ebeler SE, Mills DA.

mBio. 2016 Jun 14;7(3). pii: e00631-16. doi: 10.1128/mBio.00631-16.


Oligosaccharides Released from Milk Glycoproteins Are Selective Growth Substrates for Infant-Associated Bifidobacteria.

Karav S, Le Parc A, Leite Nobrega de Moura Bell JM, Frese SA, Kirmiz N, Block DE, Barile D, Mills DA.

Appl Environ Microbiol. 2016 May 31;82(12):3622-3630. doi: 10.1128/AEM.00547-16. Print 2016 Jun 15.


Impact of Lactic Acid and Hydrogen Ion on the Simultaneous Fermentation of Glucose and Xylose by the Carbon Catabolite Derepressed Lactobacillus brevis ATCC 14869.

Jeong KH, Israr B, Shoemaker SP, Mills DA, Kim J.

J Microbiol Biotechnol. 2016 Jul 28;26(7):1182-9. doi: 10.4014/jmb.1512.12038.


Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice.

Garcia-Mazcorro JF, Ivanov I, Mills DA, Noratto G.

PeerJ. 2016 Feb 15;4:e1702. doi: 10.7717/peerj.1702. eCollection 2016.


Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition.

Charbonneau MR, O'Donnell D, Blanton LV, Totten SM, Davis JC, Barratt MJ, Cheng J, Guruge J, Talcott M, Bain JR, Muehlbauer MJ, Ilkayeva O, Wu C, Struckmeyer T, Barile D, Mangani C, Jorgensen J, Fan YM, Maleta K, Dewey KG, Ashorn P, Newgard CB, Lebrilla C, Mills DA, Gordon JI.

Cell. 2016 Feb 25;164(5):859-71. doi: 10.1016/j.cell.2016.01.024. Epub 2016 Feb 18.


The Synthesis of Multifunctionalized 1,3-Oxazin-4-ones from Donor-Acceptor Cyclopropanes.

Smith RJ, Mills DA, Nhu D, Tan EW, Lucas NT, Hawkins BC.

J Org Chem. 2016 Mar 4;81(5):2099-105. doi: 10.1021/acs.joc.6b00112. Epub 2016 Feb 22.


The one-pot multienzyme (OPME) synthesis of human blood group H antigens and a human milk oligosaccharide (HMOS) with highly active Thermosynechococcus elongates α1-2-fucosyltransferase.

Zhao C, Wu Y, Yu H, Shah IM, Li Y, Zeng J, Liu B, Mills DA, Chen X.

Chem Commun (Camb). 2016 Mar 11;52(20):3899-902. doi: 10.1039/c5cc10646j. Epub 2016 Feb 11.

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