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Items: 1 to 50 of 300

1.

β-Barrel outer membrane proteins suppress mTORC2 activation and induce autophagic responses.

Chaudhary A, Kamischke C, Leite M, Altura MA, Kinman L, Kulasekara H, Blanc MP, Wang G, Terhorst C, Miller SI.

Sci Signal. 2018 Nov 27;11(558). pii: eaat7493. doi: 10.1126/scisignal.aat7493.

PMID:
30482849
2.

Inhibiting the Evolution of Antibiotic Resistance.

Ragheb MN, Thomason MK, Hsu C, Nugent P, Gage J, Samadpour AN, Kariisa A, Merrikh CN, Miller SI, Sherman DR, Merrikh H.

Mol Cell. 2018 Nov 8. pii: S1097-2765(18)30847-5. doi: 10.1016/j.molcel.2018.10.015. [Epub ahead of print]

3.

Identification of Small Molecule Modulators of Diguanylate Cyclase by FRET-based High-Throughput-Screening.

Christen M, Kamischke C, Kulasekara HD, Olivas KC, Kulasekara BR, Christen B, Kline T, Miller SI.

Chembiochem. 2018 Nov 5. doi: 10.1002/cbic.201800593. [Epub ahead of print]

PMID:
30395379
4.

Multidrug-Resistant Acinetobacter baumannii Chloramphenicol Resistance Requires an Inner Membrane Permease.

Karalewitz AP, Miller SI.

Antimicrob Agents Chemother. 2018 Jul 27;62(8). pii: e00513-18. doi: 10.1128/AAC.00513-18. Print 2018 Aug.

PMID:
29891596
5.

Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis.

Matamouros S, Hayden HS, Hager KR, Brittnacher MJ, Lachance K, Weiss EJ, Pope CE, Imhaus AF, McNally CP, Borenstein E, Hoffman LR, Miller SI.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1605-1610. doi: 10.1073/pnas.1714373115. Epub 2018 Jan 29.

6.

The gram-negative bacterial periplasm: Size matters.

Miller SI, Salama NR.

PLoS Biol. 2018 Jan 17;16(1):e2004935. doi: 10.1371/journal.pbio.2004935. eCollection 2018 Jan.

7.

Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya.

Akullian A, Montgomery JM, John-Stewart G, Miller SI, Hayden HS, Radey MC, Hager KR, Verani JR, Ochieng JB, Juma J, Katieno J, Fields B, Bigogo G, Audi A, Walson J.

PLoS Negl Trop Dis. 2018 Jan 12;12(1):e0006156. doi: 10.1371/journal.pntd.0006156. eCollection 2018 Jan.

8.

Transition from early intervention program to primary school in children with autism spectrum disorder.

Eapen V, Grove R, Aylward E, Joosten AV, Miller SI, Van Der Watt G, Fordyce K, Dissanayake C, Maya J, Tucker M, DeBlasio A.

World J Clin Pediatr. 2017 Nov 8;6(4):169-175. doi: 10.5409/wjcp.v6.i4.169. eCollection 2017 Nov 8.

9.

Expression level of human TLR4 rather than sequence is the key determinant of LPS responsiveness.

Hajjar AM, Ernst RK, Yi J, Yam CS, Miller SI.

PLoS One. 2017 Oct 11;12(10):e0186308. doi: 10.1371/journal.pone.0186308. eCollection 2017.

10.

Editorial overview: Host-microbe interactions: Bacteria.

Miller SI, Tsolis RM.

Curr Opin Microbiol. 2017 Feb;35:v-viii. doi: 10.1016/j.mib.2017.06.002. No abstract available.

PMID:
28648735
11.

Clinical and Fecal Microbial Changes With Diet Therapy in Active Inflammatory Bowel Disease.

Suskind DL, Cohen SA, Brittnacher MJ, Wahbeh G, Lee D, Shaffer ML, Braly K, Hayden HS, Klein J, Gold B, Giefer M, Stallworth A, Miller SI.

J Clin Gastroenterol. 2018 Feb;52(2):155-163. doi: 10.1097/MCG.0000000000000772.

12.

In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075.

Wu X, Chavez JD, Schweppe DK, Zheng C, Weisbrod CR, Eng JK, Murali A, Lee SA, Ramage E, Gallagher LA, Kulasekara HD, Edrozo ME, Kamischke CN, Brittnacher MJ, Miller SI, Singh PK, Manoil C, Bruce JE.

Nat Commun. 2016 Nov 11;7:13414. doi: 10.1038/ncomms13414.

13.

Next-Generation High-Throughput Functional Annotation of Microbial Genomes.

Baric RS, Crosson S, Damania B, Miller SI, Rubin EJ.

MBio. 2016 Oct 4;7(5). pii: e01245-16. doi: 10.1128/mBio.01245-16.

14.
15.

GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis.

Brittnacher MJ, Heltshe SL, Hayden HS, Radey MC, Weiss EJ, Damman CJ, Zisman TL, Suskind DL, Miller SI.

PLoS One. 2016 Jul 8;11(7):e0158897. doi: 10.1371/journal.pone.0158897. eCollection 2016.

16.

Human Diversity in a Cell Surface Receptor that Inhibits Autophagy.

Chaudhary A, Leite M, Kulasekara BR, Altura MA, Ogahara C, Weiss E, Fu W, Blanc MP, O'Keeffe M, Terhorst C, Akey JM, Miller SI.

Curr Biol. 2016 Jul 25;26(14):1791-801. doi: 10.1016/j.cub.2016.05.003. Epub 2016 Jun 23.

17.

A Cellular GWAS Approach to Define Human Variation in Cellular Pathways Important to Inflammation.

Miller SI, Chaudhary A.

Pathogens. 2016 Apr 26;5(2). pii: E39. doi: 10.3390/pathogens5020039. Review.

18.

Pyomelanin-producing Pseudomonas aeruginosa selected during chronic infections have a large chromosomal deletion which confers resistance to pyocins.

Hocquet D, Petitjean M, Rohmer L, Valot B, Kulasekara HD, Bedel E, Bertrand X, Plésiat P, Köhler T, Pantel A, Jacobs MA, Hoffman LR, Miller SI.

Environ Microbiol. 2016 Oct;18(10):3482-3493. doi: 10.1111/1462-2920.13336. Epub 2016 Jun 2.

19.

Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress.

Hayden HS, Matamouros S, Hager KR, Brittnacher MJ, Rohmer L, Radey MC, Weiss EJ, Kim KB, Jacobs MA, Sims-Day EH, Yue M, Zaidi MB, Schifferli DM, Manning SD, Walson JL, Miller SI.

MBio. 2016 Mar 8;7(2):e00154. doi: 10.1128/mBio.00154-16.

20.

Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis.

Manor O, Levy R, Pope CE, Hayden HS, Brittnacher MJ, Carr R, Radey MC, Hager KR, Heltshe SL, Ramsey BW, Miller SI, Hoffman LR, Borenstein E.

Sci Rep. 2016 Mar 4;6:22493. doi: 10.1038/srep22493.

21.

Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis.

Damman CJ, Brittnacher MJ, Westerhoff M, Hayden HS, Radey M, Hager KR, Marquis SR, Miller SI, Zisman TL.

PLoS One. 2015 Aug 19;10(8):e0133925. doi: 10.1371/journal.pone.0133925. eCollection 2015.

22.

A direct screen for c-di-GMP modulators reveals a Salmonella Typhimurium periplasmic ʟ-arginine-sensing pathway.

Mills E, Petersen E, Kulasekara BR, Miller SI.

Sci Signal. 2015 Jun 9;8(380):ra57. doi: 10.1126/scisignal.aaa1796.

PMID:
26060330
23.

HAMP Domain Rotation and Tilting Movements Associated with Signal Transduction in the PhoQ Sensor Kinase.

Matamouros S, Hager KR, Miller SI.

MBio. 2015 May 26;6(3):e00616-15. doi: 10.1128/mBio.00616-15.

24.

Acidic pH and divalent cation sensing by PhoQ are dispensable for systemic salmonellae virulence.

Hicks KG, Delbecq SP, Sancho-Vaello E, Blanc MP, Dove KK, Prost LR, Daley ME, Zeth K, Klevit RE, Miller SI.

Elife. 2015 May 23;4:e06792. doi: 10.7554/eLife.06792.

25.

Backbone chemical shift assignments for the sensor domain of the Burkholderia pseudomallei histidine kinase RisS: "missing" resonances at the dimer interface.

Buchko GW, Edwards TE, Hewitt SN, Phan IQ, Van Voorhis WC, Miller SI, Myler PJ.

Biomol NMR Assign. 2015 Oct;9(2):381-5. doi: 10.1007/s12104-015-9614-2. Epub 2015 May 9.

26.

Delivery of cardiolipins to the Salmonella outer membrane is necessary for survival within host tissues and virulence.

Dalebroux ZD, Edrozo MB, Pfuetzner RA, Ressl S, Kulasekara BR, Blanc MP, Miller SI.

Cell Host Microbe. 2015 Apr 8;17(4):441-51. doi: 10.1016/j.chom.2015.03.003.

27.

Salmonellae interactions with host processes.

LaRock DL, Chaudhary A, Miller SI.

Nat Rev Microbiol. 2015 Apr;13(4):191-205. doi: 10.1038/nrmicro3420. Epub 2015 Mar 9. Review.

28.

An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis.

Million-Weaver S, Samadpour AN, Moreno-Habel DA, Nugent P, Brittnacher MJ, Weiss E, Hayden HS, Miller SI, Liachko I, Merrikh H.

Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):E1096-105. doi: 10.1073/pnas.1416651112. Epub 2015 Feb 23.

29.

Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease.

Suskind DL, Brittnacher MJ, Wahbeh G, Shaffer ML, Hayden HS, Qin X, Singh N, Damman CJ, Hager KR, Nielson H, Miller SI.

Inflamm Bowel Dis. 2015 Mar;21(3):556-63. doi: 10.1097/MIB.0000000000000307.

30.

S. Typhimurium strategies to resist killing by cationic antimicrobial peptides.

Matamouros S, Miller SI.

Biochim Biophys Acta. 2015 Nov;1848(11 Pt B):3021-5. doi: 10.1016/j.bbamem.2015.01.013. Epub 2015 Jan 30. Review.

31.

Salmonella modulation of the phagosome membrane, role of SseJ.

Kolodziejek AM, Miller SI.

Cell Microbiol. 2015 Mar;17(3):333-41. doi: 10.1111/cmi.12420. Epub 2015 Feb 23. Review.

PMID:
25620407
32.

Temporal and anatomical host resistance to chronic Salmonella infection is quantitatively dictated by Nramp1 and influenced by host genetic background.

Loomis WP, Johnson ML, Brasfield A, Blanc MP, Yi J, Miller SI, Cookson BT, Hajjar AM.

PLoS One. 2014 Oct 28;9(10):e111763. doi: 10.1371/journal.pone.0111763. eCollection 2014. Erratum in: PLoS One. 2015;10(1):e0117648.

33.

Pseudomonas aeruginosa in vitro phenotypes distinguish cystic fibrosis infection stages and outcomes.

Mayer-Hamblett N, Rosenfeld M, Gibson RL, Ramsey BW, Kulasekara HD, Retsch-Bogart GZ, Morgan W, Wolter DJ, Pope CE, Houston LS, Kulasekara BR, Khan U, Burns JL, Miller SI, Hoffman LR.

Am J Respir Crit Care Med. 2014 Aug 1;190(3):289-97. doi: 10.1164/rccm.201404-0681OC.

34.

Genomic analysis of the emergence of 20th century epidemic dysentery.

Rohmer L, Jacobs MA, Brittnacher MJ, Fong C, Hayden HS, Hocquet D, Weiss EJ, Radey M, Germani Y, Talukder KA, Hager AJ, Kemner JM, Sims-Day EH, Matamouros S, Hager KR, Miller SI.

BMC Genomics. 2014 May 10;15:355. doi: 10.1186/1471-2164-15-355.

35.

Comparative Genomic Analysis of Two Multidrug-Resistant Clinical Isolates of ST395 Epidemic Strain of Pseudomonas aeruginosa Obtained 12 Years Apart.

Valot B, Rohmer L, Jacobs MA, Miller SI, Bertrand X, Hocquet D.

Genome Announc. 2014 May 29;2(3). pii: e00515-14. doi: 10.1128/genomeA.00515-14.

36.

Pseudomonas aeruginosa phenotypes associated with eradication failure in children with cystic fibrosis.

Mayer-Hamblett N, Ramsey BW, Kulasekara HD, Wolter DJ, Houston LS, Pope CE, Kulasekara BR, Armbruster CR, Burns JL, Retsch-Bogart G, Rosenfeld M, Gibson RL, Miller SI, Khan U, Hoffman LR.

Clin Infect Dis. 2014 Sep 1;59(5):624-31. doi: 10.1093/cid/ciu385. Epub 2014 May 26.

37.

Gastrointestinal pathology in juvenile and adult CFTR-knockout ferrets.

Sun X, Olivier AK, Yi Y, Pope CE, Hayden HS, Liang B, Sui H, Zhou W, Hager KR, Zhang Y, Liu X, Yan Z, Fisher JT, Keiser NW, Song Y, Tyler SR, Goeken JA, Kinyon JM, Radey MC, Fligg D, Wang X, Xie W, Lynch TJ, Kaminsky PM, Brittnacher MJ, Miller SI, Parekh K, Meyerholz DK, Hoffman LR, Frana T, Stewart ZA, Engelhardt JF.

Am J Pathol. 2014 May;184(5):1309-22. doi: 10.1016/j.ajpath.2014.01.035. Epub 2014 Mar 15.

38.

Salmonellae PhoPQ regulation of the outer membrane to resist innate immunity.

Dalebroux ZD, Miller SI.

Curr Opin Microbiol. 2014 Feb;17:106-13. doi: 10.1016/j.mib.2013.12.005. Epub 2014 Feb 14. Review.

39.

PhoPQ regulates acidic glycerophospholipid content of the Salmonella Typhimurium outer membrane.

Dalebroux ZD, Matamouros S, Whittington D, Bishop RE, Miller SI.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1963-8. doi: 10.1073/pnas.1316901111. Epub 2014 Jan 21.

40.

c-di-GMP heterogeneity is generated by the chemotaxis machinery to regulate flagellar motility.

Kulasekara BR, Kamischke C, Kulasekara HD, Christen M, Wiggins PA, Miller SI.

Elife. 2013 Dec 17;2:e01402. doi: 10.7554/eLife.01402.

41.

A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis-specific lipid A.

Thaipisuttikul I, Hittle LE, Chandra R, Zangari D, Dixon CL, Garrett TA, Rasko DA, Dasgupta N, Moskowitz SM, Malmström L, Goodlett DR, Miller SI, Bishop RE, Ernst RK.

Mol Microbiol. 2014 Jan;91(1):158-74. doi: 10.1111/mmi.12451. Epub 2013 Nov 27.

42.

Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis.

Hoffman LR, Pope CE, Hayden HS, Heltshe S, Levy R, McNamara S, Jacobs MA, Rohmer L, Radey M, Ramsey BW, Brittnacher MJ, Borenstein E, Miller SI.

Clin Infect Dis. 2014 Feb;58(3):396-9. doi: 10.1093/cid/cit715. Epub 2013 Oct 30.

43.

A cellular genome-wide association study reveals human variation in microtubule stability and a role in inflammatory cell death.

Salinas RE, Ogohara C, Thomas MI, Shukla KP, Miller SI, Ko DC.

Mol Biol Cell. 2014 Jan;25(1):76-86. doi: 10.1091/mbc.E13-06-0294. Epub 2013 Oct 30.

44.

A chemical biology approach to interrogate quorum-sensing regulated behaviors at the molecular and cellular level.

Lowery CA, Matamouros S, Niessen S, Zhu J, Scolnick J, Lively JM, Cravatt BF, Miller SI, Kaufmann GF, Janda KD.

Chem Biol. 2013 Jul 25;20(7):903-11. doi: 10.1016/j.chembiol.2013.05.009.

45.

Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.

Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, Hoffman NG.

PLoS One. 2013 May 29;8(5):e65226. doi: 10.1371/journal.pone.0065226. Print 2013.

46.

A refined model of the prototypical Salmonella SPI-1 T3SS basal body reveals the molecular basis for its assembly.

Bergeron JR, Worrall LJ, Sgourakis NG, DiMaio F, Pfuetzner RA, Felise HB, Vuckovic M, Yu AC, Miller SI, Baker D, Strynadka NC.

PLoS Pathog. 2013;9(4):e1003307. doi: 10.1371/journal.ppat.1003307. Epub 2013 Apr 25.

47.

Yersinia pestis insecticidal-like toxin complex (Tc) family proteins: characterization of expression, subcellular localization, and potential role in infection of the flea vector.

Spinner JL, Jarrett CO, LaRock DL, Miller SI, Collins CM, Hinnebusch BJ.

BMC Microbiol. 2012 Dec 18;12:296. doi: 10.1186/1471-2180-12-296.

48.

The response threshold of Salmonella PilZ domain proteins is determined by their binding affinities for c-di-GMP.

Pultz IS, Christen M, Kulasekara HD, Kennard A, Kulasekara B, Miller SI.

Mol Microbiol. 2012 Dec;86(6):1424-40. doi: 10.1111/mmi.12066. Epub 2012 Nov 19.

49.

Humanized TLR4/MD-2 mice reveal LPS recognition differentially impacts susceptibility to Yersinia pestis and Salmonella enterica.

Hajjar AM, Ernst RK, Fortuno ES 3rd, Brasfield AS, Yam CS, Newlon LA, Kollmann TR, Miller SI, Wilson CB.

PLoS Pathog. 2012;8(10):e1002963. doi: 10.1371/journal.ppat.1002963. Epub 2012 Oct 11.

50.

The microbiome and inflammatory bowel disease: is there a therapeutic role for fecal microbiota transplantation?

Damman CJ, Miller SI, Surawicz CM, Zisman TL.

Am J Gastroenterol. 2012 Oct;107(10):1452-9. doi: 10.1038/ajg.2012.93. Review.

PMID:
23034604

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