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Core Competencies for Undergraduates in Bioengineering and Biomedical Engineering: Findings, Consequences, and Recommendations.

White JA, Gaver DP, Butera RJ Jr, Choi B, Dunlop MJ, Grande-Allen KJ, Grosberg A, Hitchcock RW, Huang-Saad AY, Kotche M, Kyle AM, Lerner AL, Linehan JH, Linsenmeier RA, Miller MI, Papin JA, Setton L, Sgro A, Smith ML, Zaman M, Lee AP.

Ann Biomed Eng. 2020 Mar;48(3):905-912. doi: 10.1007/s10439-020-02468-2. Epub 2020 Feb 5.


Diffeomorphic Upsampling of Serially Acquired Sparse 2D Cross-Sections in Cardiac MRI.

Lee BC, Tward DJ, Wei J, Tipre D, Weiss RG, Miller MI, Ardekani S.

Conf Proc IEEE Eng Med Biol Soc. 2019 Jul;2019:4491-4495. doi: 10.1109/EMBC.2019.8856317.


Association of peripheral inflammatory markers with connectivity in large-scale functional brain networks of non-demented older adults.

Walker KA, Gross AL, Moghekar AR, Soldan A, Pettigrew C, Hou X, Lu H, Alfini AJ, Bilgel M, Miller MI, Albert MS, Walston J.

Brain Behav Immun. 2020 Jan 11. pii: S0889-1591(19)31061-X. doi: 10.1016/j.bbi.2020.01.006. [Epub ahead of print]


Cognitive reserve and rate of change in Alzheimer's and cerebrovascular disease biomarkers among cognitively normal individuals.

Pettigrew C, Soldan A, Zhu Y, Cai Q, Wang MC, Moghekar A, Miller MI, Singh B, Martinez O, Fletcher E, DeCarli C, Albert M.

Neurobiol Aging. 2020 Apr;88:33-41. doi: 10.1016/j.neurobiolaging.2019.12.003. Epub 2019 Dec 17.



Tward DJ, Mitra PP, Miller MI.

Q Appl Math. 2019;77:467-488. doi: 10.1090/qam/1527. Epub 2018 Nov 20.


Delayed lung expansion after decortication in a case of trapped lung resulting from catamenial haemothorax.

Miller MI, Meister AC, Litle VR, Suzuki K.

Interact Cardiovasc Thorac Surg. 2020 Mar 1;30(3):493-494. doi: 10.1093/icvts/ivz266.


Peripheral Blood Lymphocytes and Platelets Are Prognostic in Surgical pT1 Non-Small Cell Lung Cancer.

Sulibhavi A, Asokan S, Miller MI, Moreira P, Daly BD, Fernando HC, Litle VR, Suzuki K.

Ann Thorac Surg. 2020 Feb;109(2):337-342. doi: 10.1016/j.athoracsur.2019.09.006. Epub 2019 Oct 5.


Test-retest reproducibility of a multi-atlas automated segmentation tool on multimodality brain MRI.

Rezende TJR, Campos BM, Hsu J, Li Y, Ceritoglu C, Kutten K, França Junior MC, Mori S, Miller MI, Faria AV.

Brain Behav. 2019 Oct;9(10):e01363. doi: 10.1002/brb3.1363. Epub 2019 Sep 4.


Extended multimodal whole-brain anatomical covariance analysis: detection of disrupted correlation networks related to amyloid deposition.

Ye C, Albert M, Brown T, Bilgel M, Hsu J, Ma T, Caffo B, Miller MI, Mori S, Oishi K.

Heliyon. 2019 Jul 20;5(7):e02074. doi: 10.1016/j.heliyon.2019.e02074. eCollection 2019 Jul.


Relation of koniocellular layers of dorsal lateral geniculate to inferior pulvinar nuclei in common marmosets.

Huo BX, Zeater N, Lin MK, Takahashi YS, Hanada M, Nagashima J, Lee BC, Hata J, Zaheer A, Grünert U, Miller MI, Rosa MGP, Okano H, Martin PR, Mitra PP.

Eur J Neurosci. 2019 Dec;50(12):4004-4017. doi: 10.1111/ejn.14529. Epub 2019 Aug 16.


Using deep Siamese neural networks for detection of brain asymmetries associated with Alzheimer's Disease and Mild Cognitive Impairment.

Liu CF, Padhy S, Ramachandran S, Wang VX, Efimov A, Bernal A, Shi L, Vaillant M, Ratnanather JT, Faria AV, Caffo B, Albert M, Miller MI; BIOCARD Research Team; Alzheimer's Disease Neuroimaging Initiative.

Magn Reson Imaging. 2019 Dec;64:190-199. doi: 10.1016/j.mri.2019.07.003. Epub 2019 Jul 15.


Resting-State Functional Connectivity Is Associated With Cerebrospinal Fluid Levels of the Synaptic Protein NPTX2 in Non-demented Older Adults.

Soldan A, Moghekar A, Walker KA, Pettigrew C, Hou X, Lu H, Miller MI, Alfini A, Albert M, Xu D, Xiao MF, Worley P; BIOCARD Research Team.

Front Aging Neurosci. 2019 Jun 7;11:132. doi: 10.3389/fnagi.2019.00132. eCollection 2019.


Developmental trajectories of the human embryologic brain regions.

Oishi K, Chotiyanonta J, Wu D, Miller MI, Mori S, Oishi K; Pediatric Imaging Neurocognition and Genetics Study.

Neurosci Lett. 2019 Aug 24;708:134342. doi: 10.1016/j.neulet.2019.134342. Epub 2019 Jun 19.


Editorial: Bayesian Estimation and Inference in Computational Anatomy and Neuroimaging: Methods and Applications.

Tang X, Miller MI.

Front Neurosci. 2019 May 29;13:562. doi: 10.3389/fnins.2019.00562. eCollection 2019. No abstract available.


Magnetic resonance imaging of mouse brain networks plasticity following motor learning.

Badea A, Ng KL, Anderson RJ, Zhang J, Miller MI, O'Brien RJ.

PLoS One. 2019 May 8;14(5):e0216596. doi: 10.1371/journal.pone.0216596. eCollection 2019.


Identifying Changepoints in Biomarkers During the Preclinical Phase of Alzheimer's Disease.

Younes L, Albert M, Moghekar A, Soldan A, Pettigrew C, Miller MI.

Front Aging Neurosci. 2019 Apr 2;11:74. doi: 10.3389/fnagi.2019.00074. eCollection 2019.


Multi-atlas based detection and localization (MADL) for location-dependent quantification of white matter hyperintensities.

Wu D, Albert M, Soldan A, Pettigrew C, Oishi K, Tomogane Y, Ye C, Ma T, Miller MI, Mori S.

Neuroimage Clin. 2019;22:101772. doi: 10.1016/j.nicl.2019.101772. Epub 2019 Mar 13.


Response control correlates of anomalous basal ganglia morphology in boys, but not girls, with attention-deficit/hyperactivity disorder.

Tang X, Seymour KE, Crocetti D, Miller MI, Mostofsky SH, Rosch KS.

Behav Brain Res. 2019 Jul 23;367:117-127. doi: 10.1016/j.bbr.2019.03.036. Epub 2019 Mar 23.


Cloud-Based Brain Magnetic Resonance Image Segmentation and Parcellation System for Individualized Prediction of Cognitive Worsening.

Sakamoto R, Marano C, Miller MI, Lyketsos CG, Li Y, Mori S, Oishi K, Adni ADNI.

J Healthc Eng. 2019 Jan 29;2019:9507193. doi: 10.1155/2019/9507193. eCollection 2019.


Multi-atlas tool for automated segmentation of brain gray matter nuclei and quantification of their magnetic susceptibility.

Li X, Chen L, Kutten K, Ceritoglu C, Li Y, Kang N, Hsu JT, Qiao Y, Wei H, Liu C, Miller MI, Mori S, Yousem DM, van Zijl PCM, Faria AV.

Neuroimage. 2019 May 1;191:337-349. doi: 10.1016/j.neuroimage.2019.02.016. Epub 2019 Feb 7.


Automated Generation of Radiologic Descriptions on Brain Volume Changes From T1-Weighted MR Images: Initial Assessment of Feasibility.

Akazawa K, Sakamoto R, Nakajima S, Wu D, Li Y, Oishi K, Faria AV, Yamada K, Togashi K, Lyketsos CG, Miller MI, Mori S.

Front Neurol. 2019 Jan 24;10:7. doi: 10.3389/fneur.2019.00007. eCollection 2019.


A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset.

Lin MK, Takahashi YS, Huo BX, Hanada M, Nagashima J, Hata J, Tolpygo AS, Ram K, Lee BC, Miller MI, Rosa MG, Sasaki E, Iriki A, Okano H, Mitra P.

Elife. 2019 Feb 5;8. pii: e40042. doi: 10.7554/eLife.40042.


On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model.

Lee BC, Tward DJ, Mitra PP, Miller MI.

PLoS Comput Biol. 2018 Dec 26;14(12):e1006610. doi: 10.1371/journal.pcbi.1006610. eCollection 2018 Dec.


Cortical thickness atrophy in the transentorhinal cortex in mild cognitive impairment.

Kulason S, Tward DJ, Brown T, Sicat CS, Liu CF, Ratnanather JT, Younes L, Bakker A, Gallagher M, Albert M, Miller MI; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage Clin. 2019;21:101617. doi: 10.1016/j.nicl.2018.101617. Epub 2018 Dec 5.


A community-developed open-source computational ecosystem for big neuro data.

Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R.

Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. No abstract available.


Regional subcortical shape analysis in premanifest Huntington's disease.

Tang X, Ross CA, Johnson H, Paulsen JS, Younes L, Albin RL, Ratnanather JT, Miller MI.

Hum Brain Mapp. 2019 Apr 1;40(5):1419-1433. doi: 10.1002/hbm.24456. Epub 2018 Oct 30.


Surgical Management of Patients with Advanced Germ Cell Tumors Following Salvage Chemotherapy: Memorial Sloan Kettering Cancer Center (MSKCC) Experience.

Miller MI, Feifer A, Feldman DR, Carver BS, Bosl GJ, Motzer RJ, Bajorin DF, Sheinfeld J.

Urology. 2019 Feb;124:174-178. doi: 10.1016/j.urology.2018.09.024. Epub 2018 Oct 6.



Tang X, Miller MI, Younes L.

Ann Appl Stat. 2017 Sep;11(3):1738-1762. doi: 10.1214/17-AOAS1056.


Atlas pre-selection strategies to enhance the efficiency and accuracy of multi-atlas brain segmentation tools.

Ye C, Ma T, Wu D, Ceritoglu C, Miller MI, Mori S.

PLoS One. 2018 Jul 27;13(7):e0200294. doi: 10.1371/journal.pone.0200294. eCollection 2018.


Whole-brain Segmentation and Change-point Analysis of Anatomical Brain MRI-Application in Premanifest Huntington's Disease.

Wu D, Faria AV, Younes L, Ross CA, Mori S, Miller MI.

J Vis Exp. 2018 Jun 9;(136). doi: 10.3791/57256.


A Fully-Automated Subcortical and Ventricular Shape Generation Pipeline Preserving Smoothness and Anatomical Topology.

Tang X, Luo Y, Chen Z, Huang N, Johnson HJ, Paulsen JS, Miller MI.

Front Neurosci. 2018 May 17;12:321. doi: 10.3389/fnins.2018.00321. eCollection 2018.


Computational anatomy and diffeomorphometry: A dynamical systems model of neuroanatomy in the soft condensed matter continuum.

Miller MI, Arguillère S, Tward DJ, Younes L.

Wiley Interdiscip Rev Syst Biol Med. 2018 Nov;10(6):e1425. doi: 10.1002/wsbm.1425. Epub 2018 Jun 4. Review.


Characterizing the human hippocampus in aging and Alzheimer's disease using a computational atlas derived from ex vivo MRI and histology.

Adler DH, Wisse LEM, Ittyerah R, Pluta JB, Ding SL, Xie L, Wang J, Kadivar S, Robinson JL, Schuck T, Trojanowski JQ, Grossman M, Detre JA, Elliott MA, Toledo JB, Liu W, Pickup S, Miller MI, Das SR, Wolk DA, Yushkevich PA.

Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):4252-4257. doi: 10.1073/pnas.1801093115. Epub 2018 Mar 28.


Predicting progression from normal cognition to mild cognitive impairment for individuals at 5 years.

Albert M, Zhu Y, Moghekar A, Mori S, Miller MI, Soldan A, Pettigrew C, Selnes O, Li S, Wang MC.

Brain. 2018 Mar 1;141(3):877-887. doi: 10.1093/brain/awx365.


An ion trap time-of-flight mass spectrometer with high mass resolution for cold trapped ion experiments.

Schmid PC, Greenberg J, Miller MI, Loeffler K, Lewandowski HJ.

Rev Sci Instrum. 2017 Dec;88(12):123107. doi: 10.1063/1.4996911.


Brain MRI Pattern Recognition Translated to Clinical Scenarios.

Faria AV, Liang Z, Miller MI, Mori S.

Front Neurosci. 2017 Oct 20;11:578. doi: 10.3389/fnins.2017.00578. eCollection 2017.


On the Complexity of Human Neuroanatomy at the Millimeter Morphome Scale: Developing Codes and Characterizing Entropy Indexed to Spatial Scale.

Tward DJ, Miller MI.

Front Neurosci. 2017 Oct 18;11:577. doi: 10.3389/fnins.2017.00577. eCollection 2017.


Cognitive reserve and long-term change in cognition in aging and preclinical Alzheimer's disease.

Soldan A, Pettigrew C, Cai Q, Wang J, Wang MC, Moghekar A, Miller MI, Albert M; BIOCARD Research Team.

Neurobiol Aging. 2017 Dec;60:164-172. doi: 10.1016/j.neurobiolaging.2017.09.002. Epub 2017 Sep 11.


Progressive medial temporal lobe atrophy during preclinical Alzheimer's disease.

Pettigrew C, Soldan A, Sloane K, Cai Q, Wang J, Wang MC, Moghekar A, Miller MI, Albert M; BIOCARD Research Team.

Neuroimage Clin. 2017 Aug 25;16:439-446. doi: 10.1016/j.nicl.2017.08.022. eCollection 2017.


Improved Recovery of Erectile Function in Younger Men after Radical Prostatectomy: Does it Justify Immediate Surgery in Low-risk Patients?

Lee JK, Sjoberg DD, Miller MI, Vickers AJ, Mulhall JP, Ehdaie B.

Eur Urol. 2018 Jan;73(1):33-37. doi: 10.1016/j.eururo.2017.08.007. Epub 2017 Aug 26.


Temporal Subtraction of Serial CT Images with Large Deformation Diffeomorphic Metric Mapping in the Identification of Bone Metastases.

Sakamoto R, Yakami M, Fujimoto K, Nakagomi K, Kubo T, Emoto Y, Akasaka T, Aoyama G, Yamamoto H, Miller MI, Mori S, Togashi K.

Radiology. 2017 Nov;285(2):629-639. doi: 10.1148/radiol.2017161942. Epub 2017 Jul 3.


Mapping the order and pattern of brain structural MRI changes using change-point analysis in premanifest Huntington's disease.

Wu D, Faria AV, Younes L, Mori S, Brown T, Johnson H, Paulsen JS, Ross CA, Miller MI; PREDICT-HD Investigators and Coordinators of the Huntington Study Group.

Hum Brain Mapp. 2017 Oct;38(10):5035-5050. doi: 10.1002/hbm.23713. Epub 2017 Jun 28.


Population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space.

Feng L, Jeon T, Yu Q, Ouyang M, Peng Q, Mishra V, Pletikos M, Sestan N, Miller MI, Mori S, Hsiao S, Liu S, Huang H.

Brain Struct Funct. 2017 Dec;222(9):4131-4147. doi: 10.1007/s00429-017-1463-6. Epub 2017 Jun 20.


Elucidation of White Matter Tracts of the Human Amygdala by Detailed Comparison between High-Resolution Postmortem Magnetic Resonance Imaging and Histology.

Mori S, Kageyama Y, Hou Z, Aggarwal M, Patel J, Brown T, Miller MI, Wu D, Troncoso JC.

Front Neuroanat. 2017 Mar 14;11:16. doi: 10.3389/fnana.2017.00016. eCollection 2017.


Anomalous subcortical morphology in boys, but not girls, with ADHD compared to typically developing controls and correlates with emotion dysregulation.

Seymour KE, Tang X, Crocetti D, Mostofsky SH, Miller MI, Rosch KS.

Psychiatry Res Neuroimaging. 2017 Mar 30;261:20-28. doi: 10.1016/j.pscychresns.2017.01.002. Epub 2017 Jan 6.


Patient-Reported Self-Efficacy, Anxiety, and Health-Related Quality of Life During Chemotherapy: Results From a Longitudinal Study.

Papadopoulou C, Kotronoulas G, Schneider A, Miller MI, McBride J, Polly Z, Bettles S, Whitehouse A, McCann L, Kearney N, Maguire R.

Oncol Nurs Forum. 2017 Jan 1;44(1):127-136.


Direct estimation of patient attributes from anatomical MRI based on multi-atlas voting.

Wu D, Ceritoglu C, Miller MI, Mori S.

Neuroimage Clin. 2016 Sep 14;12:570-581. eCollection 2016.


Education is associated with sub-regions of the hippocampus and the amygdala vulnerable to neuropathologies of Alzheimer's disease.

Tang X, Varma VR, Miller MI, Carlson MC.

Brain Struct Funct. 2017 Apr;222(3):1469-1479. doi: 10.1007/s00429-016-1287-9. Epub 2016 Aug 17.


Shape and diffusion tensor imaging based integrative analysis of the hippocampus and the amygdala in Alzheimer's disease.

Tang X, Qin Y, Wu J, Zhang M, Zhu W, Miller MI.

Magn Reson Imaging. 2016 Oct;34(8):1087-99. doi: 10.1016/j.mri.2016.05.001. Epub 2016 May 20.

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