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A Scientific Odyssey: Uncovering the Secrets of Thymus Function.

Miller JF.

Cell. 2019 Sep 19;179(1):21-26. doi: 10.1016/j.cell.2019.08.023. Epub 2019 Sep 10. No abstract available.


An in situ high-throughput screen identifies inhibitors of intracellular Burkholderia pseudomallei with therapeutic efficacy.

Bulterys PL, Toesca IJ, Norris MH, Maloy JP, Fitz-Gibbon ST, France B, Toffig B, Morselli M, Somprasong N, Pellegrini M, Schweizer HP, Tuanyok A, Damoiseaux R, French CT, Miller JF.

Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18597-18606. doi: 10.1073/pnas.1906388116. Epub 2019 Aug 22.


Incorporation of a chiral gem-disubstituted nitrogen heterocycle yields an oxazolidinone antibiotic with reduced mitochondrial toxicity.

Sun AW, Bulterys PL, Bartberger MD, Jorth PA, O'Boyle BM, Virgil SC, Miller JF, Stoltz BM.

Bioorg Med Chem Lett. 2019 Sep 15;29(18):2686-2689. doi: 10.1016/j.bmcl.2019.07.024. Epub 2019 Jul 16.


A substrate-independent framework to characterize reservoir computers.

Dale M, Miller JF, Stepney S, Trefzer MA.

Proc Math Phys Eng Sci. 2019 Jun;475(2226):20180723. doi: 10.1098/rspa.2018.0723. Epub 2019 Jun 19.


Illness Management in Older Lesbian, Gay, Bisexual, and Transgender Couples: A Review.

Nowakowski ACH, Chan AY, Miller JF, Sumerau JE.

Gerontol Geriatr Med. 2019 Jan 15;5:2333721418822865. doi: 10.1177/2333721418822865. eCollection 2019 Jan-Dec. Review.


Multimodal imaging guides surgical management in a preclinical spinal implant infection model.

Zoller SD, Park HY, Olafsen T, Zamilpa C, Burke ZD, Blumstein G, Sheppard WL, Hamad CD, Hori KR, Tseng JC, Czupryna J, McMannus C, Lee JT, Bispo M, Romero Pastrana F, Raineri EJ, Miller JF, Miller LS, van Dijl JM, Francis KP, Bernthal NM.

JCI Insight. 2019 Feb 7;4(3). pii: 124813. doi: 10.1172/jci.insight.124813. [Epub ahead of print]


Climatic drivers of melioidosis in Laos and Cambodia: a 16-year case series analysis.

Bulterys PL, Bulterys MA, Phommasone K, Luangraj M, Mayxay M, Kloprogge S, Miliya T, Vongsouvath M, Newton PN, Phetsouvanh R, French CT, Miller JF, Turner P, Dance DAB.

Lancet Planet Health. 2018 Aug;2(8):e334-e343. doi: 10.1016/S2542-5196(18)30172-4.


Template-assisted synthesis of adenine-mutagenized cDNA by a retroelement protein complex.

Handa S, Jiang Y, Tao S, Foreman R, Schinazi RF, Miller JF, Ghosh P.

Nucleic Acids Res. 2018 Oct 12;46(18):9711-9725. doi: 10.1093/nar/gky620.


YouTube as a Site of Counternarratives to Transnormativity.

Miller JF MA.

J Homosex. 2019;66(6):815-837. doi: 10.1080/00918369.2018.1484629. Epub 2018 Jul 11.


Do transgender men have equal access to health care and engagement in preventive health behaviors compared to cisgender adults?

Seelman KL, Miller JF, Fawcett ZER, Cline L.

Soc Work Health Care. 2018 Aug;57(7):502-525. doi: 10.1080/00981389.2018.1462292. Epub 2018 Apr 30.


Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages.

Cheng L, Marinelli LJ, Grosset N, Fitz-Gibbon ST, Bowman CA, Dang BQ, Russell DA, Jacobs-Sera D, Shi B, Pellegrini M, Miller JF, Gautier M, Hatfull GF, Modlin RL.

BMC Microbiol. 2018 Mar 1;18(1):19. doi: 10.1186/s12866-018-1159-y.


Electrophysiological Signatures of Spatial Boundaries in the Human Subiculum.

Lee SA, Miller JF, Watrous AJ, Sperling MR, Sharan A, Worrell GA, Berry BM, Aronson JP, Davis KA, Gross RE, Lega B, Sheth S, Das SR, Stein JM, Gorniak R, Rizzuto DS, Jacobs J.

J Neurosci. 2018 Mar 28;38(13):3265-3272. doi: 10.1523/JNEUROSCI.3216-17.2018. Epub 2018 Feb 21. Erratum in: J Neurosci. 2019 May 15;39(20):3993.


Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey.

Wu L, Gingery M, Abebe M, Arambula D, Czornyj E, Handa S, Khan H, Liu M, Pohlschroder M, Shaw KL, Du A, Guo H, Ghosh P, Miller JF, Zimmerly S.

Nucleic Acids Res. 2018 Jan 9;46(1):11-24. doi: 10.1093/nar/gkx1150.


DGR mutagenic transposition occurs via hypermutagenic reverse transcription primed by nicked template RNA.

Naorem SS, Han J, Wang S, Lee WR, Heng X, Miller JF, Guo H.

Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):E10187-E10195. doi: 10.1073/pnas.1715952114. Epub 2017 Nov 6.


Accelerating Advances in Science, Engineering, and Medicine through Nanoscience and Nanotechnology.

Chan WCW, Khademhosseini A, Möhwald H, Parak WJ, Miller JF, Ozcan A, Weiss PS.

ACS Nano. 2017 Apr 25;11(4):3423-3424. doi: 10.1021/acsnano.7b02616. No abstract available.


Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea.

Paul BG, Burstein D, Castelle CJ, Handa S, Arambula D, Czornyj E, Thomas BC, Ghosh P, Miller JF, Banfield JF, Valentine DL.

Nat Microbiol. 2017 Apr 3;2:17045. doi: 10.1038/nmicrobiol.2017.45.


Identification and Optimization of Carbon Radicals on Hydrated Graphene Oxide for Ubiquitous Antibacterial Coatings.

Li R, Mansukhani ND, Guiney LM, Ji Z, Zhao Y, Chang CH, French CT, Miller JF, Hersam MC, Nel AE, Xia T.

ACS Nano. 2016 Dec 27;10(12):10966-10980. doi: 10.1021/acsnano.6b05692. Epub 2016 Nov 28.


Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements.

Handa S, Paul BG, Miller JF, Valentine DL, Ghosh P.

BMC Struct Biol. 2016 Aug 31;16(1):13. doi: 10.1186/s12900-016-0064-6.


Evolutionary Algorithms for Boolean Functions in Diverse Domains of Cryptography.

Picek S, Carlet C, Guilley S, Miller JF, Jakobovic D.

Evol Comput. 2016 Winter;24(4):667-694. Epub 2016 Aug 2.


Using Language Sample Analysis to Assess Spoken Language Production in Adolescents.

Miller JF, Andriacchi K, Nockerts A.

Lang Speech Hear Serv Sch. 2016 Apr 1;47(2):99-112. doi: 10.1044/2015_LSHSS-15-0051.


Differential regulation of type III secretion and virulence genes in Bordetella pertussis and Bordetella bronchiseptica by a secreted anti-σ factor.

Ahuja U, Shokeen B, Cheng N, Cho Y, Blum C, Coppola G, Miller JF.

Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):2341-8. doi: 10.1073/pnas.1600320113. Epub 2016 Feb 16.


Perceived cognitive changes with chemotherapy for breast cancer: A pilot study.

Piacentine LB, Miller JF, Haberlein S, Bloom AS.

Appl Nurs Res. 2016 Feb;29:9-11. doi: 10.1016/j.apnr.2015.03.015. Epub 2015 Apr 9.


Tools for the Microbiome: Nano and Beyond.

Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, Silver PA, Taha S, van den Engh G, Weiss PS, Wong GC, Wright AT, Young TD.

ACS Nano. 2016 Jan 26;10(1):6-37. doi: 10.1021/acsnano.5b07826. Epub 2015 Dec 22. Review.


MICROBIOME. A unified initiative to harness Earth's microbiomes.

Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA; Unified Microbiome Initiative Consortium.

Science. 2015 Oct 30;350(6260):507-8. doi: 10.1126/science.aac8480. Epub 2015 Oct 28. No abstract available.


Clinical impact of wordless picture storybooks on bilingual narrative language production: A comparison of the 'Frog' stories.

Heilmann JJ, Rojas R, Iglesias A, Miller JF.

Int J Lang Commun Disord. 2016 May;51(3):339-45. doi: 10.1111/1460-6984.12201. Epub 2015 Sep 10.


Diversity-generating Retroelements in Phage and Bacterial Genomes.

Guo H, Arambula D, Ghosh P, Miller JF.

Microbiol Spectr. 2014 Dec;2(6). doi: 10.1128/microbiolspec.MDNA3-0029-2014. Review.


The RAB5-GEF Function of RIN1 Regulates Multiple Steps During Listeria monocytogenes Infection.

Balaji K, French CT, Miller JF, Colicelli J.

Traffic. 2015 Jul;16(7):796. doi: 10.1111/tra.12268. Epub 2015 Feb 24. No abstract available.


The journey from discoveries in fundamental immunology to cancer immunotherapy.

Miller JF, Sadelain M.

Cancer Cell. 2015 Apr 13;27(4):439-49. doi: 10.1016/j.ccell.2015.03.007. Epub 2015 Apr 6. Review.


Repeating spatial activations in human entorhinal cortex.

Miller JF, Fried I, Suthana N, Jacobs J.

Curr Biol. 2015 Apr 20;25(8):1080-5. doi: 10.1016/j.cub.2015.02.045. Epub 2015 Apr 2.


Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states.

Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH.

Nat Struct Mol Biol. 2015 May;22(5):377-82. doi: 10.1038/nsmb.2995. Epub 2015 Mar 30.


Targeted diversity generation by intraterrestrial archaea and archaeal viruses.

Paul BG, Bagby SC, Czornyj E, Arambula D, Handa S, Sczyrba A, Ghosh P, Miller JF, Valentine DL.

Nat Commun. 2015 Mar 23;6:6585. doi: 10.1038/ncomms7585.


Correction: A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution.

Zhang X, Guo H, Jin L, Czornyj E, Hodes A, Hui WH, Nieh AW, Miller JF, Zhou ZH.

Elife. 2015 Mar 18;4. doi: 10.7554/eLife.07482. No abstract available.


The Hsp60 peptide p277 enhances anti-CD3 mediated diabetes remission in non-obese diabetic mice.

Sarikonda G, Sachithanantham S, Miller JF, Pagni PP, Coppieters KT, von Herrath M.

J Autoimmun. 2015 May;59:61-6. doi: 10.1016/j.jaut.2015.02.003. Epub 2015 Mar 13.


BDC12-4.1 T-cell receptor transgenic insulin-specific CD4 T cells are resistant to in vitro differentiation into functional Foxp3+ T regulatory cells.

Sarikonda G, Fousteri G, Sachithanantham S, Miller JF, Dave A, Juntti T, Coppieters KT, von Herrath M.

PLoS One. 2014 Nov 13;9(11):e112242. doi: 10.1371/journal.pone.0112242. eCollection 2014.


Revisiting thymus function.

Miller JF.

Front Immunol. 2014 Aug 28;5:411. doi: 10.3389/fimmu.2014.00411. eCollection 2014. Review. No abstract available.


Characterization and analysis of the Burkholderia pseudomallei BsaN virulence regulon.

Chen Y, Schröder I, French CT, Jaroszewicz A, Yee XJ, Teh BE, Toesca IJ, Miller JF, Gan YH.

BMC Microbiol. 2014 Aug 1;14:206. doi: 10.1186/s12866-014-0206-6.


The RAB5-GEF function of RIN1 regulates multiple steps during Listeria monocytogenes infection.

Balaji K, French CT, Miller JF, Colicelli J.

Traffic. 2014 Nov;15(11):1206-18. doi: 10.1111/tra.12204. Epub 2014 Sep 4. Erratum in: Traffic. 2015 Jul;16(7):796.


Type three secretion system-mediated escape of Burkholderia pseudomallei into the host cytosol is critical for the activation of NFκB.

Teh BE, French CT, Chen Y, Chen IG, Wu TH, Sagullo E, Chiou PY, Teitell MA, Miller JF, Gan YH.

BMC Microbiol. 2014 May 6;14:115. doi: 10.1186/1471-2180-14-115.


Bordetella pertussis pathogenesis: current and future challenges.

Melvin JA, Scheller EV, Miller JF, Cotter PA.

Nat Rev Microbiol. 2014 Apr;12(4):274-88. doi: 10.1038/nrmicro3235. Epub 2014 Mar 10. Review.


The Type VI secretion system spike protein VgrG5 mediates membrane fusion during intercellular spread by pseudomallei group Burkholderia species.

Toesca IJ, French CT, Miller JF.

Infect Immun. 2014 Apr;82(4):1436-44. doi: 10.1128/IAI.01367-13. Epub 2014 Jan 13.


CD8 T-cell reactivity to islet antigens is unique to type 1 while CD4 T-cell reactivity exists in both type 1 and type 2 diabetes.

Sarikonda G, Pettus J, Phatak S, Sachithanantham S, Miller JF, Wesley JD, Cadag E, Chae J, Ganesan L, Mallios R, Edelman S, Peters B, von Herrath M.

J Autoimmun. 2014 May;50:77-82. doi: 10.1016/j.jaut.2013.12.003. Epub 2013 Dec 30.


A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution.

Zhang X, Guo H, Jin L, Czornyj E, Hodes A, Hui WH, Nieh AW, Miller JF, Zhou ZH.

Elife. 2013 Dec 17;2:e01299. doi: 10.7554/eLife.01299. Erratum in: Elife. 2015;4. doi: 10.7554/eLife.07482.


Neural activity in human hippocampal formation reveals the spatial context of retrieved memories.

Miller JF, Neufang M, Solway A, Brandt A, Trippel M, Mader I, Hefft S, Merkow M, Polyn SM, Jacobs J, Kahana MJ, Schulze-Bonhage A.

Science. 2013 Nov 29;342(6162):1111-4. doi: 10.1126/science.1244056.


Imidazopyridazine hepatitis C virus polymerase inhibitors. Structure-activity relationship studies and the discovery of a novel, traceless prodrug mechanism.

Leivers M, Miller JF, Chan SA, Lauchli R, Liehr S, Mo W, Ton T, Turner EM, Youngman M, Falls JG, Long S, Mathis A, Walker J.

J Med Chem. 2014 Mar 13;57(5):1964-75. doi: 10.1021/jm401337x. Epub 2013 Nov 23.


Temporal intra-individual variation of immunological biomarkers in type 1 diabetes patients: implications for future use in cross-sectional assessment.

Sarikonda G, Pettus J, Sachithanantham S, Phatak S, Miller JF, Ganesan L, Chae J, Mallios R, Edelman S, Peters B, von Herrath M.

PLoS One. 2013 Nov 4;8(11):e79383. doi: 10.1371/journal.pone.0079383. eCollection 2013.


Synthesis of HCV replicase inhibitors: base-catalyzed synthesis of protected α-hydrazino esters and selective aerobic oxidation with catalytic Pt/Bi/C for synthesis of imidazole-4,5-dicarbaldehyde.

Bowman RK, Brown AD, Cobb JH, Eaddy JF, Hatcher MA, Leivers MR, Miller JF, Mitchell MB, Patterson DE, Toczko MA, Xie S.

J Org Chem. 2013 Dec 6;78(23):11680-90. doi: 10.1021/jo4014595. Epub 2013 Nov 13.


The CD19 signalling molecule is elevated in NOD mice and controls type 1 diabetes development.

Ziegler AI, Le Page MA, Maxwell MJ, Stolp J, Guo H, Jayasimhan A, Hibbs ML, Santamaria P, Miller JF, Plebanski M, Silveira PA, Slattery RM.

Diabetologia. 2013 Dec;56(12):2659-68. doi: 10.1007/s00125-013-3038-2. Epub 2013 Sep 8.


Direct recordings of grid-like neuronal activity in human spatial navigation.

Jacobs J, Weidemann CT, Miller JF, Solway A, Burke JF, Wei XX, Suthana N, Sperling MR, Sharan AD, Fried I, Kahana MJ.

Nat Neurosci. 2013 Sep;16(9):1188-90. doi: 10.1038/nn.3466. Epub 2013 Aug 4.


Factors influencing excellence in nursing.

Miller JF.

Pa Nurse. 2013 Spring;68(1):4-8; quiz 9. No abstract available.


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