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Items: 1 to 50 of 187

1.

Response to Lange re: Calcium Oxalate Urolithiasis: A Case of Missing Microbes?

Batagello CA, Monga M, Miller AW.

J Endourol. 2018 Nov;32(11):1007. doi: 10.1089/end.2018.29049.cab. No abstract available.

PMID:
30407879
2.

Metagenomic sequencing provides insights into microbial detoxification in the guts of small mammalian herbivores (Neotoma spp.).

Kohl KD, Oakeson KF, Orr TJ, Miller AW, Forbey JS, Phillips CD, Dale C, Weiss RB, Dearing MD.

FEMS Microbiol Ecol. 2018 Nov 1;94(12). doi: 10.1093/femsec/fiy184.

PMID:
30202961
3.

Calcium Oxalate Urolithiasis: A Case of Missing Microbes?

Batagello CA, Monga M, Miller AW.

J Endourol. 2018 Nov;32(11):995-1005. doi: 10.1089/end.2018.0294. Epub 2018 Oct 20.

PMID:
29808727
4.

Shifting sands could bring invasive species.

Everett RA, Miller AW, Ruiz GM.

Science. 2018 Feb 23;359(6378):878. doi: 10.1126/science.aar7741. No abstract available.

PMID:
29472474
5.

Intestinal Epithelial Cell-Derived LKB1 Suppresses Colitogenic Microbiota.

Liu X, Lu J, Liu Z, Zhao J, Sun H, Wu N, Liu H, Liu W, Hu Z, Meng G, Shen L, Miller AW, Su B, Li X, Kang Z.

J Immunol. 2018 Mar 1;200(5):1889-1900. doi: 10.4049/jimmunol.1700547. Epub 2018 Jan 19.

PMID:
29352002
6.

Microbiota Diversification and Crash Induced by Dietary Oxalate in the Mammalian Herbivore Neotoma albigula.

Miller AW, Dale C, Dearing MD.

mSphere. 2017 Oct 18;2(5). pii: e00428-17. doi: 10.1128/mSphere.00428-17. eCollection 2017 Sep-Oct.

7.

The Induction of Oxalate Metabolism In Vivo Is More Effective with Functional Microbial Communities than with Functional Microbial Species.

Miller AW, Dale C, Dearing MD.

mSystems. 2017 Sep 26;2(5). pii: e00088-17. doi: 10.1128/mSystems.00088-17. eCollection 2017 Sep-Oct.

8.

LRRK2 promotes the activation of NLRC4 inflammasome during Salmonella Typhimurium infection.

Liu W, Liu X, Li Y, Zhao J, Liu Z, Hu Z, Wang Y, Yao Y, Miller AW, Su B, Cookson MR, Li X, Kang Z.

J Exp Med. 2017 Oct 2;214(10):3051-3066. doi: 10.1084/jem.20170014. Epub 2017 Aug 18.

9.

Modeling time-series data from microbial communities.

Ridenhour BJ, Brooker SL, Williams JE, Van Leuven JT, Miller AW, Dearing MD, Remien CH.

ISME J. 2017 Nov;11(11):2526-2537. doi: 10.1038/ismej.2017.107. Epub 2017 Aug 8.

10.

Chemostat Culture for Yeast Physiology and Experimental Evolution.

Dunham MJ, Kerr EO, Miller AW, Payen C.

Cold Spring Harb Protoc. 2017 Jul 5;2017(7):pdb.top077610. doi: 10.1101/pdb.top077610.

PMID:
28679718
11.

Assembly of a Mini-Chemostat Array.

Miller AW, Kerr EO, Dunham MJ.

Cold Spring Harb Protoc. 2017 Jul 5;2017(7):pdb.prot088997. doi: 10.1101/pdb.prot088997.

PMID:
28679698
12.

Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast.

Hope EA, Amorosi CJ, Miller AW, Dang K, Heil CS, Dunham MJ.

Genetics. 2017 Jun;206(2):1153-1167. doi: 10.1534/genetics.116.198895. Epub 2017 Apr 26.

13.

A multiplex culture system for the long-term growth of fission yeast cells.

Callens C, Coelho NC, Miller AW, Sananes MRD, Dunham MJ, Denoual M, Coudreuse D.

Yeast. 2017 Aug;34(8):343-355. doi: 10.1002/yea.3237. Epub 2017 Jun 6.

14.

Evaluating the combined effects of ballast water management and trade dynamics on transfers of marine organisms by ships.

Carney KJ, Minton MS, Holzer KK, Miller AW, McCann LD, Ruiz GM.

PLoS One. 2017 Mar 20;12(3):e0172468. doi: 10.1371/journal.pone.0172468. eCollection 2017.

15.

Differential paralog divergence modulates genome evolution across yeast species.

Sanchez MR, Miller AW, Liachko I, Sunshine AB, Lynch B, Huang M, Alcantara E, DeSevo CG, Pai DA, Tucker CM, Hoang ML, Dunham MJ.

PLoS Genet. 2017 Feb 14;13(2):e1006585. doi: 10.1371/journal.pgen.1006585. eCollection 2017 Feb.

16.

Potential effects of LNG trade shift on transfer of ballast water and biota by ships.

Holzer KK, Muirhead JR, Minton MS, Carney KJ, Miller AW, Ruiz GM.

Sci Total Environ. 2017 Feb 15;580:1470-1474. doi: 10.1016/j.scitotenv.2016.12.125. Epub 2016 Dec 28.

PMID:
28038872
17.

Microbial Community Transplant Results in Increased and Long-Term Oxalate Degradation.

Miller AW, Oakeson KF, Dale C, Dearing MD.

Microb Ecol. 2016 Aug;72(2):470-8. doi: 10.1007/s00248-016-0800-2. Epub 2016 Jun 16.

18.

Effect of Dietary Oxalate on the Gut Microbiota of the Mammalian Herbivore Neotoma albigula.

Miller AW, Oakeson KF, Dale C, Dearing MD.

Appl Environ Microbiol. 2016 Apr 18;82(9):2669-2675. doi: 10.1128/AEM.00216-16. Print 2016 May.

19.

Genomic Analysis of ATP Efflux in Saccharomyces cerevisiae.

Peters TW, Miller AW, Tourette C, Agren H, Hubbard A, Hughes RE.

G3 (Bethesda). 2015 Nov 19;6(1):161-70. doi: 10.1534/g3.115.023267.

21.
22.

Aspirin overutilization for the primary prevention of cardiovascular disease.

VanWormer JJ, Miller AW, Rezkalla SH.

Clin Epidemiol. 2014 Dec 1;6:433-40. doi: 10.2147/CLEP.S72032. eCollection 2014.

23.

A low cost, customizable turbidostat for use in synthetic circuit characterization.

Takahashi CN, Miller AW, Ekness F, Dunham MJ, Klavins E.

ACS Synth Biol. 2015 Jan 16;4(1):32-8. doi: 10.1021/sb500165g. Epub 2014 Aug 1.

24.

Development of reusable logic for determination of statin exposure-time from electronic health records.

Miller AW, McCarty CA, Broeckel U, Hytopoulos V, Cross DS.

J Biomed Inform. 2014 Jun;49:206-12. doi: 10.1016/j.jbi.2014.02.014. Epub 2014 Mar 15.

25.

Herbivorous rodents (Neotoma spp.) harbour abundant and active foregut microbiota.

Kohl KD, Miller AW, Marvin JE, Mackie R, Dearing MD.

Environ Microbiol. 2014 Sep;16(9):2869-78. doi: 10.1111/1462-2920.12376. Epub 2014 Jan 23.

PMID:
24373154
26.

The gastrointestinal tract of the white-throated Woodrat (Neotoma albigula) harbors distinct consortia of oxalate-degrading bacteria.

Miller AW, Kohl KD, Dearing MD.

Appl Environ Microbiol. 2014 Mar;80(5):1595-601. doi: 10.1128/AEM.03742-13. Epub 2013 Dec 20.

27.

Counting at low concentrations: the statistical challenges of verifying ballast water discharge standards.

Frazier M, Miller AW, Lee H 2nd, Reusser DA.

Ecol Appl. 2013 Mar;23(2):339-51.

PMID:
23634586
28.

Per capita invasion probabilities: an empirical model to predict rates of invasion via ballast water.

Reusser DA, Lee H 2nd, Frazier M, Ruiz GM, Fofonoff PW, Minton MS, Miller AW.

Ecol Appl. 2013 Mar;23(2):321-30.

PMID:
23634584
29.

Geographic variation in marine invasions among large estuaries: effects of ships and time.

Ruiz GM, Fofonoff PW, Ashton G, Minton MS, Miller AW.

Ecol Appl. 2013 Mar;23(2):311-20.

PMID:
23634583
30.

Linking science and policy to prevent the spread of invasive species from the ballast water discharge of ships.

Frazier M, Miller AW, Ruiz GM.

Ecol Appl. 2013 Mar;23(2):287-8. No abstract available.

PMID:
23634580
31.

Transcriptome sequencing and microarray development for the woodrat (Neotoma spp.): custom genetic tools for exploring herbivore ecology.

Malenke JR, Milash B, Miller AW, Dearing MD.

Mol Ecol Resour. 2013 Jul;13(4):674-87. doi: 10.1111/1755-0998.12092. Epub 2013 Mar 16.

PMID:
23496907
32.

Regional epidemiologic assessment of prevalent periodontitis using an electronic health record system.

Acharya A, VanWormer JJ, Waring SC, Miller AW, Fuehrer JT, Nycz GR.

Am J Epidemiol. 2013 Apr 1;177(7):700-7. doi: 10.1093/aje/kws293. Epub 2013 Mar 4.

33.

Design and use of multiplexed chemostat arrays.

Miller AW, Befort C, Kerr EO, Dunham MJ.

J Vis Exp. 2013 Feb 23;(72):e50262. doi: 10.3791/50262.

34.

Simplified behaviors from increased heterogeneity: II. 3-D uranium transport at the decimeter scale and intertank comparisons.

Miller AW, Rodriguez DR, Honeyman BD.

J Contam Hydrol. 2013 May;148:51-66. doi: 10.1016/j.jconhyd.2012.12.011. Epub 2013 Jan 23.

PMID:
23399383
35.

Simplified behaviors from increased heterogeneity: I. 2-D uranium transport experiments at the decimeter scale.

Miller AW, Rodriguez DR, Honeyman BD.

J Contam Hydrol. 2013 May;148:39-50. doi: 10.1016/j.jconhyd.2012.11.011. Epub 2013 Jan 11.

PMID:
23357486
36.

The metabolic and ecological interactions of oxalate-degrading bacteria in the Mammalian gut.

Miller AW, Dearing D.

Pathogens. 2013 Dec 6;2(4):636-52. doi: 10.3390/pathogens2040636. Review.

37.

Longitudinal study of implantable cardioverter-defibrillators: methods and clinical characteristics of patients receiving implantable cardioverter-defibrillators for primary prevention in contemporary practice.

Masoudi FA, Go AS, Magid DJ, Cassidy-Bushrow AE, Doris JM, Fiocchi F, Garcia-Montilla R, Glenn KA, Goldberg RJ, Gupta N, Gurwitz JH, Hammill SC, Hayes JJ, Jackson N, Kadish A, Lauer M, Miller AW, Multerer D, Peterson PN, Reifler LM, Reynolds K, Saczynski JS, Schuger C, Sharma PP, Smith DH, Suits M, Sung SH, Varosy PD, Vidaillet HJ, Greenlee RT.

Circ Cardiovasc Qual Outcomes. 2012 Nov;5(6):e78-85. doi: 10.1161/CIRCOUTCOMES.112.965368.

38.

Ocean acidification and the loss of phenolic substances in marine plants.

Arnold T, Mealey C, Leahey H, Miller AW, Hall-Spencer JM, Milazzo M, Maers K.

PLoS One. 2012;7(4):e35107. doi: 10.1371/journal.pone.0035107. Epub 2012 Apr 25.

39.

Radionuclide interaction with clays in dilute and heavily compacted systems: a critical review.

Miller AW, Wang Y.

Environ Sci Technol. 2012 Feb 21;46(4):1981-94. doi: 10.1021/es203025q. Epub 2012 Feb 2. Review.

PMID:
22257091
40.

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study.

Kho AN, Hayes MG, Rasmussen-Torvik L, Pacheco JA, Thompson WK, Armstrong LL, Denny JC, Peissig PL, Miller AW, Wei WQ, Bielinski SJ, Chute CG, Leibson CL, Jarvik GP, Crosslin DR, Carlson CS, Newton KM, Wolf WA, Chisholm RL, Lowe WL.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):212-8. doi: 10.1136/amiajnl-2011-000439. Epub 2011 Nov 19.

41.

Antibacterial activity of marine and black band disease cyanobacteria against coral-associated bacteria.

Gantar M, Kaczmarsky LT, Stanić D, Miller AW, Richardson LL.

Mar Drugs. 2011;9(10):2089-105. doi: 10.3390/md9102089. Epub 2011 Oct 24.

42.

Fine structure analysis of black band disease (BBD) infected coral and coral exposed to the BBD toxins microcystin and sulfide.

Miller AW, Richardson LL.

J Invertebr Pathol. 2012 Jan;109(1):27-33. doi: 10.1016/j.jip.2011.09.007. Epub 2011 Sep 17.

PMID:
21946456
43.

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.

Ma ZQ, Chambers MC, Ham AJ, Cheek KL, Whitwell CW, Aerni HR, Schilling B, Miller AW, Caprioli RM, Tabb DL.

J Proteome Res. 2011 Jul 1;10(7):2896-904. doi: 10.1021/pr200118r. Epub 2011 Apr 26.

44.

Fine-structural analysis of black band disease-infected coral reveals boring cyanobacteria and novel bacteria.

Miller AW, Blackwelder P, Al-Sayegh H, Richardson LL.

Dis Aquat Organ. 2011 Feb 22;93(3):179-90. doi: 10.3354/dao02305.

45.

Enumerating sparse organisms in ships' ballast water: why counting to 10 is not so easy.

Miller AW, Frazier M, Smith GE, Perry ES, Ruiz GM, Tamburri MN.

Environ Sci Technol. 2011 Apr 15;45(8):3539-46. doi: 10.1021/es102790d. Epub 2011 Mar 24.

46.

Glacial history of the North Atlantic marine snail, Littorina saxatilis, inferred from distribution of mitochondrial DNA lineages.

Panova M, Blakeslee AM, Miller AW, Mäkinen T, Ruiz GM, Johannesson K, André C.

PLoS One. 2011 Mar 11;6(3):e17511. doi: 10.1371/journal.pone.0017511.

47.

Establishment failure in biological invasions: a case history of Littorina littorea in California, USA.

Chang AL, Blakeslee AM, Miller AW, Ruiz GM.

PLoS One. 2011 Jan 10;6(1):e16035. doi: 10.1371/journal.pone.0016035.

48.

Effects of stress rate and calculation method on subcritical crack growth parameters deduced from constant stress-rate flexural testing.

Griggs JA, Alaqeel SM, Zhang Y, Miller AW 3rd, Cai Z.

Dent Mater. 2011 Apr;27(4):364-70. doi: 10.1016/j.dental.2010.11.016. Epub 2010 Dec 17.

49.

A meta-analysis of 16S rRNA gene clone libraries from the polymicrobial black band disease of corals.

Miller AW, Richardson LL.

FEMS Microbiol Ecol. 2011 Feb;75(2):231-41. doi: 10.1111/j.1574-6941.2010.00991.x. Epub 2010 Nov 26.

50.

Upscaling sorption/desorption processes in reactive transport models to describe metal/radionuclide transport: a critical review.

Miller AW, Rodriguez DR, Honeyman BD.

Environ Sci Technol. 2010 Nov 1;44(21):7996-8007. doi: 10.1021/es101822v. Review.

PMID:
20942399

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