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Items: 14

1.

Detecting topological variations of DNA at single-molecule level.

Liu K, Pan C, Kuhn A, Nievergelt AP, Fantner GE, Milenkovic O, Radenovic A.

Nat Commun. 2019 Jan 2;10(1):3. doi: 10.1038/s41467-018-07924-1.

2.

Latent Network Features and Overlapping Community Discovery via Boolean Intersection Representations.

Dau H, Milenkovic O.

IEEE ACM Trans Netw. 2017 Oct;25(5):3219-3234. doi: 10.1109/TNET.2017.2728638. Epub 2017 Aug 9.

3.

METHCOMP: a special purpose compression platform for DNA methylation data.

Peng J, Milenkovic O, Ochoa I.

Bioinformatics. 2018 Aug 1;34(15):2654-2656. doi: 10.1093/bioinformatics/bty143.

4.

ChIPWig: a random access-enabling lossless and lossy compression method for ChIP-seq data.

Ravanmehr V, Kim M, Wang Z, Milenkovic O.

Bioinformatics. 2018 Mar 15;34(6):911-919. doi: 10.1093/bioinformatics/btx685.

5.

Portable and Error-Free DNA-Based Data Storage.

Yazdi SMHT, Gabrys R, Milenkovic O.

Sci Rep. 2017 Jul 10;7(1):5011. doi: 10.1038/s41598-017-05188-1.

6.

A new correlation clustering method for cancer mutation analysis.

Hou JP, Emad A, Puleo GJ, Ma J, Milenkovic O.

Bioinformatics. 2016 Dec 15;32(24):3717-3728. Epub 2016 Aug 18.

7.

Coding in 2D: Using Intentional Dispersity to Enhance the Information Capacity of Sequence-Coded Polymer Barcodes.

Laure C, Karamessini D, Milenkovic O, Charles L, Lutz JF.

Angew Chem Int Ed Engl. 2016 Aug 26;55(36):10722-5. doi: 10.1002/anie.201605279. Epub 2016 Aug 3.

PMID:
27484303
8.

MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression.

Kim M, Zhang X, Ligo JG, Farnoud F, Veeravalli VV, Milenkovic O.

BMC Bioinformatics. 2016 Feb 19;17:94. doi: 10.1186/s12859-016-0932-x.

9.

smallWig: parallel compression of RNA-seq WIG files.

Wang Z, Weissman T, Milenkovic O.

Bioinformatics. 2016 Jan 15;32(2):173-80. doi: 10.1093/bioinformatics/btv561. Epub 2015 Sep 30.

10.

A Rewritable, Random-Access DNA-Based Storage System.

Yazdi SM, Yuan Y, Ma J, Zhao H, Milenkovic O.

Sci Rep. 2015 Sep 18;5:14138. doi: 10.1038/srep14138.

11.

HyDRA: gene prioritization via hybrid distance-score rank aggregation.

Kim M, Farnoud F, Milenkovic O.

Bioinformatics. 2015 Apr 1;31(7):1034-43. doi: 10.1093/bioinformatics/btu766. Epub 2014 Nov 18.

PMID:
25411330
12.

CaSPIAN: a causal compressive sensing algorithm for discovering directed interactions in gene networks.

Emad A, Milenkovic O.

PLoS One. 2014 Mar 12;9(3):e90781. doi: 10.1371/journal.pone.0090781. eCollection 2014.

13.

List-decoding methods for inferring polynomials in finite dynamical gene network models.

Dingel J, Milenkovic O.

Bioinformatics. 2009 Jul 1;25(13):1686-93. doi: 10.1093/bioinformatics/btp281. Epub 2009 Apr 28.

PMID:
19401400
14.

Compressive sensing DNA microarrays.

Dai W, Sheikh MA, Milenkovic O, Baraniuk RG.

EURASIP J Bioinform Syst Biol. 2009:162824. doi: 10.1155/2009/162824. Epub 2009 Jan 13.

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