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Items: 1 to 50 of 88

1.

Graphene-based biosensors for the detection of prostate cancer protein biomarkers: a review.

Xu L, Wen Y, Pandit S, Mokkapati VRSS, Mijakovic I, Li Y, Ding M, Ren S, Li W, Liu G.

BMC Chem. 2019 Sep 3;13(1):112. doi: 10.1186/s13065-019-0611-x. eCollection 2019 Dec. Review.

2.

Protein post-translational modifications in bacteria.

Macek B, Forchhammer K, Hardouin J, Weber-Ban E, Grangeasse C, Mijakovic I.

Nat Rev Microbiol. 2019 Sep 4. doi: 10.1038/s41579-019-0243-0. [Epub ahead of print] Review.

PMID:
31485032
3.

Mining biosynthetic gene clusters in Virgibacillus genomes.

Othoum G, Bougouffa S, Bokhari A, Lafi FF, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Essack M.

BMC Genomics. 2019 Sep 3;20(1):696. doi: 10.1186/s12864-019-6065-7.

4.

Production of 3-Hydroxypropanoic Acid From Glycerol by Metabolically Engineered Bacteria.

Jers C, Kalantari A, Garg A, Mijakovic I.

Front Bioeng Biotechnol. 2019 May 24;7:124. doi: 10.3389/fbioe.2019.00124. eCollection 2019. Review.

5.

Triterpenoid-biosynthetic UDP-glycosyltransferases from plants.

Rahimi S, Kim J, Mijakovic I, Jung KH, Choi G, Kim SC, Kim YJ.

Biotechnol Adv. 2019 May 9. pii: S0734-9750(19)30075-8. doi: 10.1016/j.biotechadv.2019.04.016. [Epub ahead of print] Review.

PMID:
31078628
6.

Structural Analysis of the Hanks-Type Protein Kinase YabT From Bacillus subtilis Provides New Insights in its DNA-Dependent Activation.

Shi L, Cavagnino A, Rabefiraisana JL, Lazar N, Li de la Sierra-Gallay I, Ochsenbein F, Valerio-Lepiniec M, Urvoas A, Minard P, Mijakovic I, Nessler S.

Front Microbiol. 2019 Jan 8;9:3014. doi: 10.3389/fmicb.2018.03014. eCollection 2018.

7.

Bacterial response to graphene oxide and reduced graphene oxide integrated in agar plates.

Mokkapati VRSS, Pandit S, Kim J, Martensson A, Lovmar M, Westerlund F, Mijakovic I.

R Soc Open Sci. 2018 Nov 14;5(11):181083. doi: 10.1098/rsos.181083. eCollection 2018 Nov.

8.

Antimicrobial Effects of Biogenic Nanoparticles.

Singh P, Garg A, Pandit S, Mokkapati VRSS, Mijakovic I.

Nanomaterials (Basel). 2018 Dec 5;8(12). pii: E1009. doi: 10.3390/nano8121009. Review.

9.

In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins.

Ravikumar V, Nalpas NC, Anselm V, Krug K, Lenuzzi M, Šestak MS, Domazet-Lošo T, Mijakovic I, Macek B.

Sci Rep. 2018 Nov 22;8(1):17246. doi: 10.1038/s41598-018-35589-9.

10.

Anti-biofilm effects of gold and silver nanoparticles synthesized by the Rhodiola rosea rhizome extracts.

Singh P, Pandit S, Beshay M, Mokkapati VRSS, Garnaes J, Olsson ME, Sultan A, Mackevica A, Mateiu RV, Lütken H, Daugaard AE, Baun A, Mijakovic I.

Artif Cells Nanomed Biotechnol. 2018;46(sup3):S886-S899. doi: 10.1080/21691401.2018.1518909. Epub 2018 Nov 13.

PMID:
30422688
11.

BioPS: System for screening and assessment of biofuel-production potential of cyanobacteria.

Motwalli O, Essack M, Salhi A, Hanks J, Mijakovic I, Bajic VB.

PLoS One. 2018 Aug 10;13(8):e0202002. doi: 10.1371/journal.pone.0202002. eCollection 2018.

12.

Boron nitride nanomaterials: biocompatibility and bio-applications.

Merlo A, Mokkapati VRSS, Pandit S, Mijakovic I.

Biomater Sci. 2018 Aug 21;6(9):2298-2311. doi: 10.1039/c8bm00516h. Review.

PMID:
30059084
13.

Gold Nanoparticles in Diagnostics and Therapeutics for Human Cancer.

Singh P, Pandit S, Mokkapati VRSS, Garg A, Ravikumar V, Mijakovic I.

Int J Mol Sci. 2018 Jul 6;19(7). pii: E1979. doi: 10.3390/ijms19071979. Review.

14.

Green synthesis of gold and silver nanoparticles from Cannabis sativa (industrial hemp) and their capacity for biofilm inhibition.

Singh P, Pandit S, Garnæs J, Tunjic S, Mokkapati VR, Sultan A, Thygesen A, Mackevica A, Mateiu RV, Daugaard AE, Baun A, Mijakovic I.

Int J Nanomedicine. 2018 Jun 21;13:3571-3591. doi: 10.2147/IJN.S157958. eCollection 2018.

15.

In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.

Othoum G, Bougouffa S, Razali R, Bokhari A, Alamoudi S, Antunes A, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Lafi FF, Essack M.

BMC Genomics. 2018 May 22;19(1):382. doi: 10.1186/s12864-018-4796-5.

16.

Phosphorylation of the Bacillus subtilis Replication Controller YabA Plays a Role in Regulation of Sporulation and Biofilm Formation.

García García T, Ventroux M, Derouiche A, Bidnenko V, Correia Santos S, Henry C, Mijakovic I, Noirot-Gros MF, Poncet S.

Front Microbiol. 2018 Mar 21;9:486. doi: 10.3389/fmicb.2018.00486. eCollection 2018.

17.

The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators.

Jers C, Ravikumar V, Lezyk M, Sultan A, Sjöling Å, Wai SN, Mijakovic I.

Front Cell Infect Microbiol. 2018 Jan 11;7:537. doi: 10.3389/fcimb.2017.00537. eCollection 2017.

18.

Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms.

Pandit S, Ravikumar V, Abdel-Haleem AM, Derouiche A, Mokkapati VRSS, Sihlbom C, Mineta K, Gojobori T, Gao X, Westerlund F, Mijakovic I.

Front Microbiol. 2017 Dec 22;8:2599. doi: 10.3389/fmicb.2017.02599. eCollection 2017.

19.

Serine/Threonine Protein Kinases from Bacteria, Archaea and Eukarya Share a Common Evolutionary Origin Deeply Rooted in the Tree of Life.

Stancik IA, Šestak MS, Ji B, Axelson-Fisk M, Franjevic D, Jers C, Domazet-Lošo T, Mijakovic I.

J Mol Biol. 2018 Jan 5;430(1):27-32. doi: 10.1016/j.jmb.2017.11.004. Epub 2017 Nov 11.

20.

Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity.

Nielsen J, Archer J, Essack M, Bajic VB, Gojobori T, Mijakovic I.

Appl Microbiol Biotechnol. 2017 Jun;101(12):4837-4851. doi: 10.1007/s00253-017-8310-9. Epub 2017 May 20. Review.

21.

Membrane properties and anti-bacterial/anti-biofouling activity of polysulfone-graphene oxide composite membranes phase inversed in graphene oxide non-solvent.

Mokkapati VRSS, Koseoglu-Imer DY, Yilmaz-Deveci N, Mijakovic I, Koyuncu I.

RSC Adv. 2017 Jan 16;7(8):4378-4386. doi: 10.1039/c6ra25015g.

22.

Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis.

Kalantari A, Chen T, Ji B, Stancik IA, Ravikumar V, Franjevic D, Saulou-Bérion C, Goelzer A, Mijakovic I.

Front Microbiol. 2017 Apr 18;8:638. doi: 10.3389/fmicb.2017.00638. eCollection 2017.

23.

Vitamin C Pretreatment Enhances the Antibacterial Effect of Cold Atmospheric Plasma.

Helgadóttir S, Pandit S, Mokkapati VR, Westerlund F, Apell P, Mijakovic I.

Front Cell Infect Microbiol. 2017 Feb 22;7:43. doi: 10.3389/fcimb.2017.00043. eCollection 2017.

24.

In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria.

Motwalli O, Essack M, Jankovic BR, Ji B, Liu X, Ansari HR, Hoehndorf R, Gao X, Arold ST, Mineta K, Archer JA, Gojobori T, Mijakovic I, Bajic VB.

BMC Genomics. 2017 Jan 5;18(1):33. doi: 10.1186/s12864-016-3389-4.

25.

Substrate Specificity of the Bacillus subtilis BY-Kinase PtkA Is Controlled by Alternative Activators: TkmA and SalA.

Derouiche A, Shi L, Kalantari A, Mijakovic I.

Front Microbiol. 2016 Sep 26;7:1525. eCollection 2016.

26.

Tyrosine 601 of Bacillus subtilis DnaK Undergoes Phosphorylation and Is Crucial for Chaperone Activity and Heat Shock Survival.

Shi L, Ravikumar V, Derouiche A, Macek B, Mijakovic I.

Front Microbiol. 2016 Apr 19;7:533. doi: 10.3389/fmicb.2016.00533. eCollection 2016.

27.

Exploring the diversity of protein modifications: special bacterial phosphorylation systems.

Mijakovic I, Grangeasse C, Turgay K.

FEMS Microbiol Rev. 2016 May;40(3):398-417. doi: 10.1093/femsre/fuw003. Epub 2016 Feb 28. Review.

PMID:
26926353
28.

Role of Protein Phosphorylation in the Regulation of Cell Cycle and DNA-Related Processes in Bacteria.

Garcia-Garcia T, Poncet S, Derouiche A, Shi L, Mijakovic I, Noirot-Gros MF.

Front Microbiol. 2016 Feb 16;7:184. doi: 10.3389/fmicb.2016.00184. eCollection 2016. Review.

29.

Elucidating Host-Pathogen Interactions Based on Post-Translational Modifications Using Proteomics Approaches.

Ravikumar V, Jers C, Mijakovic I.

Front Microbiol. 2015 Nov 20;6:1313. doi: 10.3389/fmicb.2015.01312. eCollection 2015. Review.

30.

Resources for Assignment of Phosphorylation Sites on Peptides and Proteins.

Ravikumar V, Macek B, Mijakovic I.

Methods Mol Biol. 2016;1355:293-306. doi: 10.1007/978-1-4939-3049-4_20.

PMID:
26584934
31.

Evolution and tinkering: what do a protein kinase, a transcriptional regulator and chromosome segregation/cell division proteins have in common?

Derouiche A, Shi L, Kalantari A, Mijakovic I.

Curr Genet. 2016 Feb;62(1):67-70. doi: 10.1007/s00294-015-0513-y. Epub 2015 Aug 19. Review.

PMID:
26286503
32.

Serine/threonine/tyrosine phosphorylation regulates DNA binding of bacterial transcriptional regulators.

Kalantari A, Derouiche A, Shi L, Mijakovic I.

Microbiology. 2015 Sep;161(9):1720-9. doi: 10.1099/mic.0.000148. Epub 2015 Jul 23. Review.

PMID:
26220449
33.

Bacillus subtilis SalA is a phosphorylation-dependent transcription regulator that represses scoC and activates the production of the exoprotease AprE.

Derouiche A, Shi L, Bidnenko V, Ventroux M, Pigonneau N, Franz-Wachtel M, Kalantari A, Nessler S, Noirot-Gros MF, Mijakovic I.

Mol Microbiol. 2015 Sep;97(6):1195-208. doi: 10.1111/mmi.13098. Epub 2015 Jul 17.

34.

Regulatory potential of post-translational modifications in bacteria.

Grangeasse C, Stülke J, Mijakovic I.

Front Microbiol. 2015 May 28;6:500. doi: 10.3389/fmicb.2015.00500. eCollection 2015. No abstract available.

35.

Protein-tyrosine phosphorylation in Bacillus subtilis: a 10-year retrospective.

Mijakovic I, Deutscher J.

Front Microbiol. 2015 Jan 23;6:18. doi: 10.3389/fmicb.2015.00018. eCollection 2015.

36.

Protein-tyrosine phosphorylation interaction network in Bacillus subtilis reveals new substrates, kinase activators and kinase cross-talk.

Shi L, Pigeonneau N, Ventroux M, Derouiche A, Bidnenko V, Mijakovic I, Noirot-Gros MF.

Front Microbiol. 2014 Oct 22;5:538. doi: 10.3389/fmicb.2014.00538. eCollection 2014.

37.

Cross-phosphorylation of bacterial serine/threonine and tyrosine protein kinases on key regulatory residues.

Shi L, Pigeonneau N, Ravikumar V, Dobrinic P, Macek B, Franjevic D, Noirot-Gros MF, Mijakovic I.

Front Microbiol. 2014 Sep 17;5:495. doi: 10.3389/fmicb.2014.00495. eCollection 2014.

38.

Synthetic promoter library for modulation of actinorhodin production in Streptomyces coelicolor A3(2).

Sohoni SV, Fazio A, Workman CT, Mijakovic I, Lantz AE.

PLoS One. 2014 Jun 25;9(6):e99701. doi: 10.1371/journal.pone.0099701. eCollection 2014.

39.

Phosphorylation of Bacillus subtilis gene regulator AbrB modulates its DNA-binding properties.

Kobir A, Poncet S, Bidnenko V, Delumeau O, Jers C, Zouhir S, Grenha R, Nessler S, Noirot P, Mijakovic I.

Mol Microbiol. 2014 Jun;92(5):1129-41. doi: 10.1111/mmi.12617. Epub 2014 Apr 29.

40.

Evolution of bacterial protein-tyrosine kinases and their relaxed specificity toward substrates.

Shi L, Ji B, Kolar-Znika L, Boskovic A, Jadeau F, Combet C, Grangeasse C, Franjevic D, Talla E, Mijakovic I.

Genome Biol Evol. 2014 Apr;6(4):800-17. doi: 10.1093/gbe/evu056.

41.

Quantitative phosphoproteome analysis of Bacillus subtilis reveals novel substrates of the kinase PrkC and phosphatase PrpC.

Ravikumar V, Shi L, Krug K, Derouiche A, Jers C, Cousin C, Kobir A, Mijakovic I, Macek B.

Mol Cell Proteomics. 2014 Aug;13(8):1965-78. doi: 10.1074/mcp.M113.035949. Epub 2014 Jan 5.

42.

Interaction of bacterial fatty-acid-displaced regulators with DNA is interrupted by tyrosine phosphorylation in the helix-turn-helix domain.

Derouiche A, Bidnenko V, Grenha R, Pigonneau N, Ventroux M, Franz-Wachtel M, Nessler S, Noirot-Gros MF, Mijakovic I.

Nucleic Acids Res. 2013 Nov;41(20):9371-81. doi: 10.1093/nar/gkt709. Epub 2013 Aug 11.

43.

Protein-serine/threonine/tyrosine kinases in bacterial signaling and regulation.

Cousin C, Derouiche A, Shi L, Pagot Y, Poncet S, Mijakovic I.

FEMS Microbiol Lett. 2013 Sep;346(1):11-9. doi: 10.1111/1574-6968.12189. Epub 2013 Jun 19. Review.

44.

Bacillus subtilis serine/threonine protein kinase YabT is involved in spore development via phosphorylation of a bacterial recombinase.

Bidnenko V, Shi L, Kobir A, Ventroux M, Pigeonneau N, Henry C, Trubuil A, Noirot-Gros MF, Mijakovic I.

Mol Microbiol. 2013 Jun;88(5):921-35. doi: 10.1111/mmi.12233. Epub 2013 May 2.

45.

Bacterial tyrosine kinases: evolution, biological function and structural insights.

Grangeasse C, Nessler S, Mijakovic I.

Philos Trans R Soc Lond B Biol Sci. 2012 Sep 19;367(1602):2640-55. doi: 10.1098/rstb.2011.0424. Review.

46.

Protein phosphorylation from the perspective of systems biology.

Derouiche A, Cousin C, Mijakovic I.

Curr Opin Biotechnol. 2012 Aug;23(4):585-90. doi: 10.1016/j.copbio.2011.11.008. Epub 2011 Nov 24. Review.

PMID:
22119098
47.

Impact of phosphoproteomics on studies of bacterial physiology.

Mijakovic I, Macek B.

FEMS Microbiol Rev. 2012 Jul;36(4):877-92. doi: 10.1111/j.1574-6976.2011.00314.x. Epub 2011 Nov 28. Review.

48.

BYKdb: the Bacterial protein tYrosine Kinase database.

Jadeau F, Grangeasse C, Shi L, Mijakovic I, Deléage G, Combet C.

Nucleic Acids Res. 2012 Jan;40(Database issue):D321-4. doi: 10.1093/nar/gkr915. Epub 2011 Nov 12.

49.

Analysis of the serine/threonine/tyrosine phosphoproteome of the pathogenic bacterium Listeria monocytogenes reveals phosphorylated proteins related to virulence.

Misra SK, Milohanic E, Aké F, Mijakovic I, Deutscher J, Monnet V, Henry C.

Proteomics. 2011 Nov;11(21):4155-65. doi: 10.1002/pmic.201100259. Epub 2011 Sep 29.

PMID:
21956863
50.

Site-specific analysis of bacterial phosphoproteomes.

Macek B, Mijakovic I.

Proteomics. 2011 Aug;11(15):3002-11. doi: 10.1002/pmic.201100012. Epub 2011 Jul 4. Review.

PMID:
21726046

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