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Items: 1 to 50 of 126

1.

Metaproteomic characterization of theVitis vinifera rhizosphere.

Bona E, Massa N, Novello G, Boatti L, Cesaro P, Todeschini V, Magnelli V, Manfredi M, Marengo E, Mignone F, Berta G, Lingua G, Gamalero E.

FEMS Microbiol Ecol. 2019 Jan 1;95(1). doi: 10.1093/femsec/fiy204.

PMID:
30307579
2.

An innovative approach to evaluate preeclampsia risk in the first trimester of pregnancy.

Turdo F, Boatti L, Mignone F, Moretti F, Campiglio M, Colosi E.

Minerva Ginecol. 2018 Oct;70(5):641-642. doi: 10.23736/S0026-4784.18.04275-2. No abstract available.

PMID:
30293401
3.

STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow.

Saggese I, Bona E, Conway M, Favero F, Ladetto M, Liò P, Manzini G, Mignone F.

BMC Bioinformatics. 2018 Jul 9;19(Suppl 7):184. doi: 10.1186/s12859-018-2174-6.

4.

A comprehensive BRCA1/2 NGS pipeline for an immediate Copy Number Variation (CNV) detection in breast and ovarian cancer molecular diagnosis.

Concolino P, Rizza R, Mignone F, Costella A, Guarino D, Carboni I, Capoluongo E, Santonocito C, Urbani A, Minucci A.

Clin Chim Acta. 2018 May;480:173-179. doi: 10.1016/j.cca.2018.02.012. Epub 2018 Feb 16. No abstract available.

PMID:
29458049
5.

The Rhizosphere Bacterial Microbiota of Vitis vinifera cv. Pinot Noir in an Integrated Pest Management Vineyard.

Novello G, Gamalero E, Bona E, Boatti L, Mignone F, Massa N, Cesaro P, Lingua G, Berta G.

Front Microbiol. 2017 Aug 14;8:1528. doi: 10.3389/fmicb.2017.01528. eCollection 2017.

6.

Competitive PCR-High Resolution Melting Analysis (C-PCR-HRMA) for large genomic rearrangements (LGRs) detection: A new approach to assess quantitative status of BRCA1 gene in a reference laboratory.

Minucci A, De Paolis E, Concolino P, De Bonis M, Rizza R, Canu G, Scaglione GL, Mignone F, Scambia G, Zuppi C, Capoluongo E.

Clin Chim Acta. 2017 Jul;470:83-92. doi: 10.1016/j.cca.2017.04.026. Epub 2017 Apr 30.

PMID:
28465148
7.

Erratum to: High Resolution Melting Analysis is Very Useful to Identify BRCA1 c.4964_4982del19 (rs80359876) Founder Calabrian Pathogenic Variant on Peripheral Blood and Buccal Swab DNA.

Minucci A, De Bonis M, De Paolis E, Gentile L, Santonocito C, Concolino P, Mignone F, Capoluongo E.

Mol Diagn Ther. 2017 Apr;21(2):233. doi: 10.1007/s40291-017-0273-0. No abstract available.

PMID:
28266003
8.

High Resolution Melting Analysis is Very Useful to Identify BRCA1 c.4964_4982del19 (rs80359876) Founder Calabrian Pathogenic Variant on Peripheral Blood and Buccal Swab DNA.

Minucci A, De Bonis M, De Paolis E, Gentile L, Santonocito C, Concolino P, Mignone F, Capoluongo E.

Mol Diagn Ther. 2017 Apr;21(2):217-223. doi: 10.1007/s40291-017-0262-3. Erratum in: Mol Diagn Ther. 2017 Apr;21(2):233.

PMID:
28161869
9.

Identification of novel proteins binding the AU-rich element of α-prothymosin mRNA through the selection of open reading frames (RIDome).

Patrucco L, Peano C, Chiesa A, Guida F, Luisi I, Boria I, Mignone F, De Bellis G, Zucchelli S, Gustincich S, Santoro C, Sblattero D, Cotella D.

RNA Biol. 2015;12(12):1289-300. doi: 10.1080/15476286.2015.1107702.

10.

Clinical impact on ovarian cancer patients of massive parallel sequencing for BRCA mutation detection: the experience at Gemelli hospital and a literature review.

Minucci A, Scambia G, Santonocito C, Concolino P, Canu G, Mignone F, Saggese I, Guarino D, Costella A, Molinario R, De Bonis M, Ferrandina G, Petrillo M, Scaglione GL, Capoluongo E.

Expert Rev Mol Diagn. 2015;15(10):1383-403. doi: 10.1586/14737159.2015.1081059. Epub 2015 Aug 26. Review.

PMID:
26306726
11.

Identification of the skin virome in a boy with widespread human papillomavirus-2-positive warts that completely regressed after administration of tetravalent human papillomavirus vaccine.

Landini MM, Borgogna C, Peretti A, Doorbar J, Griffin H, Mignone F, Lai A, Urbinati L, Matteelli A, Gariglio M, De Andrea M.

Br J Dermatol. 2015 Aug;173(2):597-600. doi: 10.1111/bjd.13707. Epub 2015 Jun 25. No abstract available.

12.

NGS-Trex: an automatic analysis workflow for RNA-Seq data.

Boria I, Boatti L, Saggese I, Mignone F.

Methods Mol Biol. 2015;1269:243-56. doi: 10.1007/978-1-4939-2291-8_15.

PMID:
25577383
13.

Diagnosis and management of deep neck infections in children: the experience of an Italian paediatric centre.

Raffaldi I, Le Serre D, Garazzino S, Scolfaro C, Bertaina C, Mignone F, Peradotto F, Tavormina P, Tovo PA.

J Infect Chemother. 2015 Feb;21(2):110-3. doi: 10.1016/j.jiac.2014.10.011. Epub 2014 Nov 20.

PMID:
25456894
14.

Natural history of vertically acquired HCV infection and associated autoimmune phenomena.

Garazzino S, Calitri C, Versace A, Alfarano A, Scolfaro C, Bertaina C, Vatrano S, Mignone F, Licciardi F, Gabiano C, Tovo PA.

Eur J Pediatr. 2014 Aug;173(8):1025-31. doi: 10.1007/s00431-014-2286-6. Epub 2014 Mar 4.

PMID:
24585099
15.

The spread of drug-resistant tuberculosis in children: an Italian case series.

Mignone F, Codecasa LR, Scolfaro C, Raffaldi I, Lancella L, Ferrarese M, Garazzino S, Marabotto C, Esposito S, Gabiano C, Lipreri R, Tovo PA.

Epidemiol Infect. 2014 Oct;142(10):2049-56. doi: 10.1017/S0950268813003191. Epub 2013 Dec 19.

PMID:
24480079
16.

An adolescent with persistent cervical lymphadenopathy and retropharyngeal abscess: case report.

Mignone F, Calitri C, Scolfaro C, Garofalo S, Lonati L, Versace A, Tovo P-.

Minerva Pediatr. 2013 Oct;65(5):569-74.

PMID:
24056382
17.

NGS-Trex: Next Generation Sequencing Transcriptome profile explorer.

Boria I, Boatti L, Pesole G, Mignone F.

BMC Bioinformatics. 2013;14 Suppl 7:S10. doi: 10.1186/1471-2105-14-S7-S10. Epub 2013 Apr 22.

18.

Profiling celiac disease antibody repertoire.

D'Angelo S, Mignone F, Deantonio C, Di Niro R, Bordoni R, Marzari R, De Bellis G, Not T, Ferrara F, Bradbury A, Santoro C, Sblattero D.

Clin Immunol. 2013 Jul;148(1):99-109. doi: 10.1016/j.clim.2013.04.009. Epub 2013 Apr 22.

PMID:
23685219
19.

Known and novel post-transcriptional regulatory sequences are conserved across plant families.

Vaughn JN, Ellingson SR, Mignone F, Arnim Av.

RNA. 2012 Mar;18(3):368-84. doi: 10.1261/rna.031179.111. Epub 2012 Jan 11.

20.

Filtering "genic" open reading frames from genomic DNA samples for advanced annotation.

D'Angelo S, Velappan N, Mignone F, Santoro C, Sblattero D, Kiss C, Bradbury AR.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S5. doi: 10.1186/1471-2164-12-S1-S5.

21.

Gene expression rhythms in the mussel Mytilus galloprovincialis (Lam.) across an annual cycle.

Banni M, Negri A, Mignone F, Boussetta H, Viarengo A, Dondero F.

PLoS One. 2011 May 5;6(5):e18904. doi: 10.1371/journal.pone.0018904.

22.

An uncommon cause of seizures in children living in developed countries: neurocysticercosis--a case report.

Raffaldi I, Scolfaro C, Mignone F, Aguzzi S, Denegri F, Tovo PA.

Ital J Pediatr. 2011 Jan 25;37:9. doi: 10.1186/1824-7288-37-9.

23.

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.

Martelli PL, D'Antonio M, Bonizzoni P, Castrignanò T, D'Erchia AM, D'Onorio De Meo P, Fariselli P, Finelli M, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Rossi I, Valletti A, Zauli A, Zambelli F, Casadio R, Pesole G.

Nucleic Acids Res. 2011 Jan;39(Database issue):D80-5. doi: 10.1093/nar/gkq1073. Epub 2010 Nov 4.

24.

Two pediatric cases of multidrug-resistant tuberculosis treated with linezolid and moxifloxacin.

Pinon M, Scolfaro C, Bignamini E, Cordola G, Esposito I, Milano R, Mignone F, Bertaina C, Tovo PA.

Pediatrics. 2010 Nov;126(5):e1253-6. doi: 10.1542/peds.2009-2172. Epub 2010 Oct 25.

PMID:
20974784
25.

Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation.

Valletti A, Anselmo A, Mangiulli M, Boria I, Mignone F, Merla G, D'Angelo V, Tullo A, Sbisà E, D'Erchia AM, Pesole G.

Mol Cancer. 2010 Sep 2;9:230. doi: 10.1186/1476-4598-9-230.

26.

An infant presenting with a voluminous exophytic perineal mass.

Garazzino S, Canavese F, Coppo P, Cortese MG, Pucci A, Mignone F, Tovo PA.

Pediatr Infect Dis J. 2010 Jun;29(6):577, 582-3. No abstract available.

PMID:
20524229
27.

Transcriptomic and proteomic effects of a neonicotinoid insecticide mixture in the marine mussel (Mytilus galloprovincialis, Lam.).

Dondero F, Negri A, Boatti L, Marsano F, Mignone F, Viarengo A.

Sci Total Environ. 2010 Aug 15;408(18):3775-86. doi: 10.1016/j.scitotenv.2010.03.040. Epub 2010 Apr 24.

PMID:
20417955
28.

Antiretroviral therapy and bone mineral measurements in HIV-infected youths.

Zuccotti G, Viganò A, Gabiano C, Giacomet V, Mignone F, Stucchi S, Manfredini V, Marinacci F, Mora S.

Bone. 2010 Jun;46(6):1633-8. doi: 10.1016/j.bone.2010.02.029. Epub 2010 Mar 6.

PMID:
20211284
29.

Rapid interactome profiling by massive sequencing.

Di Niro R, Sulic AM, Mignone F, D'Angelo S, Bordoni R, Iacono M, Marzari R, Gaiotto T, Lavric M, Bradbury AR, Biancone L, Zevin-Sonkin D, De Bellis G, Santoro C, Sblattero D.

Nucleic Acids Res. 2010 May;38(9):e110. doi: 10.1093/nar/gkq052. Epub 2010 Feb 9.

30.

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Grillo G, Turi A, Licciulli F, Mignone F, Liuni S, Banfi S, Gennarino VA, Horner DS, Pavesi G, Picardi E, Pesole G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D75-80. doi: 10.1093/nar/gkp902. Epub 2009 Oct 30.

31.

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.

Creanza TM, Horner DS, D'Addabbo A, Maglietta R, Mignone F, Ancona N, Pesole G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S2. doi: 10.1186/1471-2105-10-S6-S2.

32.

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.

Picardi E, Mignone F, Pesole G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S10. doi: 10.1186/1471-2105-10-S6-S10.

33.

Applicability of quantitative ultrasonography of the radius and tibia in HIV-infected children and adolescents.

Mora S, Viganò A, Cafarelli L, Pattarino G, Giacomet V, Gabiano C, Mignone F, Zuccotti G.

J Acquir Immune Defic Syndr. 2009 Aug 15;51(5):588-92. doi: 10.1097/QAI.0b013e3181adc838.

PMID:
19502989
34.

Prospective incidence study of bloodstream infection in infants and children with central venous catheters after cardiac surgery in Italy.

Bezzio S, Scolfaro C, Broglia R, Calabrese R, Mignone F, Abruzzese PA, Aidala E, Valori A, Grassitelli S, Rizzo A, Iannandrea S, Tovo PA.

Infect Control Hosp Epidemiol. 2009 Jul;30(7):698-701. doi: 10.1086/598242.

PMID:
19500024
35.

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G.

BMC Genomics. 2009 Apr 20;10:163. doi: 10.1186/1471-2164-10-163.

36.

Is the interruption of antiretroviral treatment during pregnancy an additional major risk factor for mother-to-child transmission of HIV type 1?

Galli L, Puliti D, Chiappini E, Gabiano C, Ferraris G, Mignone F, Viganò A, Giaquinto C, Genovese O, Anzidei G, Badolato R, Buffolano W, Maccabruni A, Salvini F, Cellini M, Ruggeri M, Manzionna M, Bernardi S, Tovo P, de Martino M; Italian Register for HIV Infection in Children.

Clin Infect Dis. 2009 May 1;48(9):1310-7. doi: 10.1086/597774.

PMID:
19309307
37.

Possible donor-recipient bartonellosis transmission in a pediatric liver transplant.

Scolfaro C, Mignone F, Gennari F, Alfarano A, Veltri A, Romagnoli R, Salizzoni M.

Transpl Infect Dis. 2008 Dec;10(6):431-3. doi: 10.1111/j.1399-3062.2008.00326.x. Epub 2008 Jul 22.

PMID:
18651873
38.

Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes.

Mignone F, Anselmo A, Donvito G, Maggi GP, Grillo G, Pesole G.

BMC Genomics. 2008 Jun 11;9:277. doi: 10.1186/1471-2164-9-277.

39.

ASPicDB: a database resource for alternative splicing analysis.

Castrignanò T, D'Antonio M, Anselmo A, Carrabino D, D'Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G.

Bioinformatics. 2008 May 15;24(10):1300-4. doi: 10.1093/bioinformatics/btn113. Epub 2008 Apr 3.

PMID:
18388144
40.

Discrimination of non-protein-coding transcripts from protein-coding mRNA.

Frith MC, Bailey TL, Kasukawa T, Mignone F, Kummerfeld SK, Madera M, Sunkara S, Furuno M, Bult CJ, Quackenbush J, Kai C, Kawai J, Carninci P, Hayashizaki Y, Pesole G, Mattick JS.

RNA Biol. 2006 Jan-Mar;3(1):40-8. Epub 2006 Apr 3.

PMID:
17114936
41.

A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22.

Rè M, Mignone F, Iacono M, Grillo G, Liuni S, Pesole G.

Gene. 2006 Jan 3;365:35-40. Epub 2005 Dec 15.

PMID:
16343814
42.

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.

Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2.

PMID:
16267081
43.

The transcriptional landscape of the mammalian genome.

Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group).

Science. 2005 Sep 2;309(5740):1559-63. Erratum in: Science. 2006 Mar 24;311(5768):1713.

44.

Discovery of 342 putative new genes from the analysis of 5'-end-sequenced full-length-enriched cDNA human transcripts.

Dalla E, Mignone F, Verardo R, Marchionni L, Marzinotto S, Lazarević D, Reid JF, Marzio R, Klarić E, Licastro D, Marcuzzi G, Gambetta R, Pierotti MA, Pesole G, Schneider C.

Genomics. 2005 Jun;85(6):739-51.

PMID:
15885500
45.

uAUG and uORFs in human and rodent 5'untranslated mRNAs.

Iacono M, Mignone F, Pesole G.

Gene. 2005 Apr 11;349:97-105.

PMID:
15777708
46.

DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes.

Boccia A, Petrillo M, di Bernardo D, Guffanti A, Mignone F, Confalonieri S, Luzi L, Pesole G, Paolella G, Ballabio A, Banfi S.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D505-10.

47.

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Mignone F, Grillo G, Licciulli F, Iacono M, Liuni S, Kersey PJ, Duarte J, Saccone C, Pesole G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D141-6.

48.

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.

Castrignanò T, Canali A, Grillo G, Liuni S, Mignone F, Pesole G.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W624-7.

49.

rRNA-like sequences in human mRNAs.

Mignone F, Pesole G.

Appl Bioinformatics. 2002;1(3):145-54.

PMID:
15130841
50.

WebVar: A resource for the rapid estimation of relative site variability from multiple sequence alignments.

Mignone F, Horner DS, Pesole G.

Bioinformatics. 2004 May 22;20(8):1331-3. Epub 2004 Feb 10.

PMID:
14871863

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