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Items: 20

1.

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA.

Langley SA, Miga KH, Karpen GH, Langley CH.

Elife. 2019 Jun 25;8. pii: e42989. doi: 10.7554/eLife.42989.

2.

DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres.

Nechemia-Arbely Y, Miga KH, Shoshani O, Aslanian A, McMahon MA, Lee AY, Fachinetti D, Yates JR 3rd, Ren B, Cleveland DW.

Nat Cell Biol. 2019 Jun;21(6):743-754. doi: 10.1038/s41556-019-0331-4. Epub 2019 Jun 3.

PMID:
31160708
3.

Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population.

Miga KH.

Genes (Basel). 2019 May 8;10(5). pii: E352. doi: 10.3390/genes10050352. Review.

4.

Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer.

Zhu Q, Hoong N, Aslanian A, Hara T, Benner C, Heinz S, Miga KH, Ke E, Verma S, Soroczynski J, Yates JR 3rd, Hunter T, Verma IM.

Mol Cell. 2018 Jun 7;70(5):842-853.e7. doi: 10.1016/j.molcel.2018.04.023. Epub 2018 May 31.

5.

Linear assembly of a human centromere on the Y chromosome.

Jain M, Olsen HE, Turner DJ, Stoddart D, Bulazel KV, Paten B, Haussler D, Willard HF, Akeson M, Miga KH.

Nat Biotechnol. 2018 Apr;36(4):321-323. doi: 10.1038/nbt.4109. Epub 2018 Mar 19.

6.

Nanopore sequencing and assembly of a human genome with ultra-long reads.

Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M.

Nat Biotechnol. 2018 Apr;36(4):338-345. doi: 10.1038/nbt.4060. Epub 2018 Jan 29.

7.

The Promises and Challenges of Genomic Studies of Human Centromeres.

Miga KH.

Prog Mol Subcell Biol. 2017;56:285-304. doi: 10.1007/978-3-319-58592-5_12. Review.

PMID:
28840242
8.

Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points.

Nechemia-Arbely Y, Fachinetti D, Miga KH, Sekulic N, Soni GV, Kim DH, Wong AK, Lee AY, Nguyen K, Dekker C, Ren B, Black BE, Cleveland DW.

J Cell Biol. 2017 Mar 6;216(3):607-621. doi: 10.1083/jcb.201608083. Epub 2017 Feb 24.

9.
10.

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.

Sevim V, Bashir A, Chin CS, Miga KH.

Bioinformatics. 2016 Jul 1;32(13):1921-1924. doi: 10.1093/bioinformatics/btw101. Epub 2016 Feb 24.

11.

Completing the human genome: the progress and challenge of satellite DNA assembly.

Miga KH.

Chromosome Res. 2015 Sep;23(3):421-6. doi: 10.1007/s10577-015-9488-2. Review.

PMID:
26363799
12.

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments.

Miga KH, Eisenhart C, Kent WJ.

Nucleic Acids Res. 2015 Nov 16;43(20):e133. doi: 10.1093/nar/gkv671. Epub 2015 Jul 10.

13.

Improved data analysis for the MinION nanopore sequencer.

Jain M, Fiddes IT, Miga KH, Olsen HE, Paten B, Akeson M.

Nat Methods. 2015 Apr;12(4):351-6. doi: 10.1038/nmeth.3290. Epub 2015 Feb 16.

14.

The UCSC Genome Browser database: 2015 update.

Rosenbloom KR, Armstrong J, Barber GP, Casper J, Clawson H, Diekhans M, Dreszer TR, Fujita PA, Guruvadoo L, Haeussler M, Harte RA, Heitner S, Hickey G, Hinrichs AS, Hubley R, Karolchik D, Learned K, Lee BT, Li CH, Miga KH, Nguyen N, Paten B, Raney BJ, Smit AF, Speir ML, Zweig AS, Haussler D, Kuhn RM, Kent WJ.

Nucleic Acids Res. 2015 Jan;43(Database issue):D670-81. doi: 10.1093/nar/gku1177. Epub 2014 Nov 26.

15.

Replication of alpha-satellite DNA arrays in endogenous human centromeric regions and in human artificial chromosome.

Erliandri I, Fu H, Nakano M, Kim JH, Miga KH, Liskovykh M, Earnshaw WC, Masumoto H, Kouprina N, Aladjem MI, Larionov V.

Nucleic Acids Res. 2014 Oct;42(18):11502-16. doi: 10.1093/nar/gku835. Epub 2014 Sep 16.

16.

Genomic characterization of large heterochromatic gaps in the human genome assembly.

Altemose N, Miga KH, Maggioni M, Willard HF.

PLoS Comput Biol. 2014 May 15;10(5):e1003628. doi: 10.1371/journal.pcbi.1003628. eCollection 2014 May.

17.

Centromere reference models for human chromosomes X and Y satellite arrays.

Miga KH, Newton Y, Jain M, Altemose N, Willard HF, Kent WJ.

Genome Res. 2014 Apr;24(4):697-707. doi: 10.1101/gr.159624.113. Epub 2014 Feb 5.

18.

The goddess of wisdom.

Rauen C, Fisk AC, Hamilton S, Lincoln P, Lyons AC, McAleer DM, Miga KC.

Crit Care Nurse. 2013 Oct;33(5):70-4. doi: 10.4037/ccn2013978. No abstract available.

19.

Strategies for success: orienting to the role of a clinical nurse specialist in critical care.

Miga KC, Rauen CA, Srsic-Stoehr K.

AACN Adv Crit Care. 2009 Jan-Mar;20(1):47-54. doi: 10.1097/NCI.0b013e31819439ad.

PMID:
19174637
20.

Trends in cardiac surgery: exploring the past and looking into the future.

Miga KC.

Crit Care Nurs Clin North Am. 2007 Dec;19(4):343-51, v. Review.

PMID:
18022520

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