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Items: 1 to 50 of 88

1.

Getting into mitochondria.

Miernyk JA.

Biochem J. 2016 Nov 1;473(21):3755-3758.

PMID:
27789742
2.

Do Cupins Have a Function Beyond Being Seed Storage Proteins?

Gábrišová D, Klubicová K, Danchenko M, Gömöry D, Berezhna VV, Skultety L, Miernyk JA, Rashydov N, Hajduch M.

Front Plant Sci. 2016 Jan 13;6:1215. doi: 10.3389/fpls.2015.01215. eCollection 2015.

3.

Analysis of soybean tissue culture protein dynamics using difference gel electrophoresis.

Miernyk JA, Jett AA, Johnston ML.

J Proteomics. 2016 Jan 1;130:56-64. doi: 10.1016/j.jprot.2015.08.023. Epub 2015 Sep 3.

PMID:
26344131
4.

Establishing a leaf proteome reference map for Ginkgo biloba provides insight into potential ethnobotanical uses.

Uvackova L, Ondruskova E, Danchenko M, Skultety L, Miernyk JA, Hrubík P, Hajduch M.

J Agric Food Chem. 2014 Nov 26;62(47):11547-56. doi: 10.1021/jf503375a. Epub 2014 Nov 17.

PMID:
25365400
5.

Convergent signaling pathways--interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation.

Rao RS, Møller IM, Thelen JJ, Miernyk JA.

Cell Stress Chaperones. 2015 Jan;20(1):15-21. doi: 10.1007/s12192-014-0544-1. Epub 2014 Sep 20.

6.

New insights into the targeting of a subset of tail-anchored proteins to the outer mitochondrial membrane.

Marty NJ, Teresinski HJ, Hwang YT, Clendening EA, Gidda SK, Sliwinska E, Zhang D, Miernyk JA, Brito GC, Andrews DW, Dyer JM, Mullen RT.

Front Plant Sci. 2014 Sep 4;5:426. doi: 10.3389/fpls.2014.00426. eCollection 2014.

7.

In silico analysis of protein Lys-N(𝜀)-acetylation in plants.

Rao RS, Thelen JJ, Miernyk JA.

Front Plant Sci. 2014 Aug 4;5:381. doi: 10.3389/fpls.2014.00381. eCollection 2014. Review.

8.

Identification of Coxiella burnetii surface-exposed and cell envelope associated proteins using a combined bioinformatics plus proteomics strategy.

Flores-Ramirez G, Jankovicova B, Bilkova Z, Miernyk JA, Skultety L.

Proteomics. 2014 Aug;14(16):1868-81. doi: 10.1002/pmic.201300338. Epub 2014 Jul 15.

PMID:
24909302
9.

Is Lys-Nɛ-acetylation the next big thing in post-translational modifications?

Rao RS, Thelen JJ, Miernyk JA.

Trends Plant Sci. 2014 Sep;19(9):550-3. doi: 10.1016/j.tplants.2014.05.001. Epub 2014 May 25.

PMID:
24866592
10.

A novel regulatory mechanism based upon a dynamic core structure for the mitochondrial pyruvate dehydrogenase complex?

Broz AK, Tovar-Méndez A, Mooney BP, Johnston ML, Miernyk JA, Randall DD.

Mitochondrion. 2014 Nov;19 Pt B:144-53. doi: 10.1016/j.mito.2014.05.003. Epub 2014 May 17.

PMID:
24846799
11.

The pea seedling mitochondrial Nε-lysine acetylome.

Smith-Hammond CL, Hoyos E, Miernyk JA.

Mitochondrion. 2014 Nov;19 Pt B:154-65. doi: 10.1016/j.mito.2014.04.012. Epub 2014 Apr 26.

PMID:
24780491
12.

Circles within circles: crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation.

Rao R, Xu D, Thelen JJ, Miernyk JA.

BMC Bioinformatics. 2013;14 Suppl 14:S14. doi: 10.1186/1471-2105-14-S14-S14. Epub 2013 Oct 9.

13.

Initial description of the developing soybean seed protein Lys-N(ε)-acetylome.

Smith-Hammond CL, Swatek KN, Johnston ML, Thelen JJ, Miernyk JA.

J Proteomics. 2014 Jan 16;96:56-66. doi: 10.1016/j.jprot.2013.10.038. Epub 2013 Nov 7.

PMID:
24211405
14.

Seed proteomics.

Miernyk JA.

Methods Mol Biol. 2014;1072:361-77. doi: 10.1007/978-1-62703-631-3_26.

PMID:
24136535
15.

A functional genomic analysis of Arabidopsis thaliana PP2C clade D.

Tovar-Mendez A, Miernyk JA, Hoyos E, Randall DD.

Protoplasma. 2014 Jan;251(1):265-71. doi: 10.1007/s00709-013-0526-7. Epub 2013 Jul 7.

PMID:
23832523
16.

Proteomic analysis of the testa from developing soybean seeds.

Miernyk JA, Johnston ML.

J Proteomics. 2013 Aug 26;89:265-72. doi: 10.1016/j.jprot.2013.05.013. Epub 2013 May 23.

PMID:
23707235
17.

A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology.

Ahsan N, Huang Y, Tovar-Mendez A, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ.

J Proteome Res. 2013 Feb 1;12(2):937-48. doi: 10.1021/pr3009995. Epub 2013 Jan 15.

18.

In silico biosynthesis of virenose, a methylated deoxy-sugar unique to Coxiella burnetii lipopolysaccharide.

Flores-Ramirez G, Janecek S, Miernyk JA, Skultety L.

Proteome Sci. 2012 Nov 15;10(1):67. doi: 10.1186/1477-5956-10-67.

19.

"Scanning mutagenesis" of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex.

Ahsan N, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ.

Front Plant Sci. 2012 Jul 16;3:153. doi: 10.3389/fpls.2012.00153. eCollection 2012.

20.

The proteomic future: where mass spectrometry should be taking us.

Thelen JJ, Miernyk JA.

Biochem J. 2012 Jun 1;444(2):169-81. doi: 10.1042/BJ20110363. Review.

PMID:
22574775
21.

Mapping the lipoylation site of Arabidopsis thaliana plastidial dihydrolipoamide S-acetyltransferase using mass spectrometry and site-directed mutagenesis.

Casteel J, Miernyk JA, Thelen JJ.

Plant Physiol Biochem. 2011 Nov;49(11):1355-61. doi: 10.1016/j.plaphy.2011.07.001. Epub 2011 Jul 14.

PMID:
21798751
22.

Proteomic comparison of virulent phase I and avirulent phase II of Coxiella burnetii, the causative agent of Q fever.

Skultety L, Hajduch M, Flores-Ramirez G, Miernyk JA, Ciampor F, Toman R, Sekeyova Z.

J Proteomics. 2011 Sep 6;74(10):1974-84. doi: 10.1016/j.jprot.2011.05.017. Epub 2011 May 15.

PMID:
21616182
23.

Using multiplex-staining to study changes in the maize leaf phosphoproteome in response to mechanical wounding.

Lewandowska-Gnatowska E, Johnston ML, Antoine W, Szczegielniak J, Muszyńska G, Miernyk JA.

Phytochemistry. 2011 Jul;72(10):1285-92. doi: 10.1016/j.phytochem.2011.01.030. Epub 2011 Feb 19.

PMID:
21334701
24.

Asp295 stabilizes the active-site loop structure of pyruvate dehydrogenase, facilitating phosphorylation of ser292 by pyruvate dehydrogenase-kinase.

Hirani TA, Tovar-Méndez A, Miernyk JA, Randall DD.

Enzyme Res. 2011 Jan 17;2011:939068. doi: 10.4061/2011/939068.

25.

Seed proteomics.

Miernyk JA, Hajduch M.

J Proteomics. 2011 Apr 1;74(4):389-400. doi: 10.1016/j.jprot.2010.12.004. Epub 2010 Dec 21. Review.

PMID:
21172463
26.

Agricultural recovery of a formerly radioactive area: I. Establishment of high-resolution quantitative protein map of mature flax seeds harvested from the remediated Chernobyl area.

Klubicová K, Berčák M, Danchenko M, Skultety L, Rashydov NM, Berezhna VV, Miernyk JA, Hajduch M.

Phytochemistry. 2011 Jul;72(10):1308-15. doi: 10.1016/j.phytochem.2010.11.010. Epub 2010 Dec 6.

PMID:
21144539
27.

Using proteomics to study sexual reproduction in angiosperms.

Miernyk JA, Preťová A, Olmedilla A, Klubicová K, Obert B, Hajduch M.

Sex Plant Reprod. 2011 Mar;24(1):9-22. doi: 10.1007/s00497-010-0149-5. Epub 2010 Sep 10. Review.

PMID:
20830489
28.

Proteomics analysis of flax grown in Chernobyl area suggests limited effect of contaminated environment on seed proteome.

Klubicová K, Danchenko M, Skultety L, Miernyk JA, Rashydov NM, Berezhna VV, Pret'ová A, Hajduch M.

Environ Sci Technol. 2010 Sep 15;44(18):6940-6. doi: 10.1021/es100895s.

PMID:
20715763
29.

A quantitative mass spectrometry-based approach for identifying protein kinase clients and quantifying kinase activity.

Huang Y, Houston NL, Tovar-Mendez A, Stevenson SE, Miernyk JA, Randall DD, Thelen JJ.

Anal Biochem. 2010 Jul 1;402(1):69-76. doi: 10.1016/j.ab.2010.03.028. Epub 2010 Mar 25.

PMID:
20346904
30.

Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.

Hajduch M, Hearne LB, Miernyk JA, Casteel JE, Joshi T, Agrawal GK, Song Z, Zhou M, Xu D, Thelen JJ.

Plant Physiol. 2010 Apr;152(4):2078-87. doi: 10.1104/pp.109.152413. Epub 2010 Jan 29.

31.

Biochemical approaches for discovering protein-protein interactions.

Miernyk JA, Thelen JJ.

Plant J. 2008 Feb;53(4):597-609. doi: 10.1111/j.1365-313X.2007.03316.x. Review.

32.

Chemical cross-linking immobilized concanavalin A for use in proteomic analyses.

Miernyk JA, Johnston ML.

Prep Biochem Biotechnol. 2006;36(3):203-14.

PMID:
16707331
33.

Regulation of nucleocytoplasmic localizatioin of the atDjC6 chaperone protein.

Suo Y, Miernyk JA.

Protoplasma. 2004 Oct;224(1-2):79-89.

PMID:
15726812
34.

Analysis of the catalytic mechanism of pyruvate dehydrogenase kinase.

Tovar-Méndez A, Hirani TA, Miernyk JA, Randall DD.

Arch Biochem Biophys. 2005 Feb 1;434(1):159-68.

PMID:
15629119
35.

Expression and assembly of Arabidopsis thaliana pyruvate dehydrogenase in insect cell cytoplasm.

Szurmak B, Strokovskaya L, Mooney BP, Randall DD, Miernyk JA.

Protein Expr Purif. 2003 Apr;28(2):357-61.

PMID:
12699701
36.

Regulation of pyruvate dehydrogenase complex activity in plant cells.

Tovar-Méndez A, Miernyk JA, Randall DD.

Eur J Biochem. 2003 Mar;270(6):1043-9.

37.

The complex fate of alpha-ketoacids.

Mooney BP, Miernyk JA, Randall DD.

Annu Rev Plant Biol. 2002;53:357-75. Review.

PMID:
12221980
38.

Histidine mutagenesis of Arabidopsis thaliana pyruvate dehydrogenase kinase.

Tovar-Mendez A, Miernyk JA, Randall DD.

Eur J Biochem. 2002 May;269(10):2601-6.

39.
40.

A genomics approach to the chaperone network of Arabidopsis thaliana.

Nover L, Miernyk JA.

Cell Stress Chaperones. 2001 Jul;6(3):175-6. No abstract available.

41.

ZMPP2, a novel type-2C protein phosphatase from maize.

Broz AK, Thelen JJ, Muszynski MG, Miernyk JA, Randall DD.

J Exp Bot. 2001 Aug;52(361):1739-40.

PMID:
11479340
42.

Developmental expression of the mitochondrial pyruvate dehydrogenase complex in pea (Pisum sativum) seedlings.

Luethy MH, Gemel J, Johnston ML, Mooney BP, Miernyk JA, Randall DD.

Physiol Plant. 2001 Aug;112(4):559-566.

PMID:
11473717
44.

Import, processing, and assembly of the alpha- and beta-subunits of chloroplast pyruvate dehydrogenase.

Johnston ML, Miernyk JA, Randall DD.

Planta. 2000 Jun;211(1):72-6.

PMID:
10923705
45.
46.

Expression of the Arabidopsis thaliana AtJ2 cochaperone protein in Pichia pastoris.

Zhou R, Kroczyńska B, Miernyk JA.

Protein Expr Purif. 2000 Jul;19(2):253-8.

PMID:
10873538
47.

Use of sulfhydryl-directed inhibitors in vitro to distinguish activities of the mitochondrial and plastidic forms of pyruvate dehydrogenase.

Johnston ML, Miernyk JA, Randall DD.

Arch Biochem Biophys. 2000 Jun 1;378(1):192-3. No abstract available.

PMID:
10871061
48.
50.

Histidine modifying agents abolish pyruvate dehydrogenase kinase activity.

Mooney BP, David NR, Thelen JJ, Miernyk JA, Randall DD.

Biochem Biophys Res Commun. 2000 Jan 19;267(2):500-3.

PMID:
10631090

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