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Items: 45

1.

The Predictive Capacity of the Buffalo Concussion Treadmill Test After Sport-Related Concussion in Adolescents.

Haider MN, Leddy JJ, Wilber CG, Viera KB, Bezherano I, Wilkins KJ, Miecznikowski JC, Willer BS.

Front Neurol. 2019 Apr 24;10:395. doi: 10.3389/fneur.2019.00395. eCollection 2019.

2.

The King-Devick test in an outpatient concussion clinic: Assessing the diagnostic and prognostic value of a vision test in conjunction with exercise testing among acutely concussed adolescents.

Lawrence JB, Haider MN, Leddy JJ, Hinds A, Miecznikowski JC, Willer BS.

J Neurol Sci. 2019 Mar 15;398:91-97. doi: 10.1016/j.jns.2018.12.020. Epub 2018 Dec 22.

PMID:
30690413
3.

Derivation of a Focused, Brief Concussion Physical Examination for Adolescents With Sport-Related Concussion.

Leddy J, Lesh K, Haider MN, Czuczman N, Baker JG, Miecznikowski J, Willer B.

Clin J Sport Med. 2018 Oct 29. doi: 10.1097/JSM.0000000000000686. [Epub ahead of print]

PMID:
30418219
4.

Evaluation of Executive Function and Mental Health in Retired Contact Sport Athletes.

Willer BS, Tiso MR, Haider MN, Hinds AL, Baker JG, Miecznikowski JC, Leddy JJ.

J Head Trauma Rehabil. 2018 Sep/Oct;33(5):E9-E15. doi: 10.1097/HTR.0000000000000423.

PMID:
30080797
5.

A Preliminary Study of Early-Onset Dementia of Former Professional Football and Hockey Players.

Willer BS, Zivadinov R, Haider MN, Miecznikowski JC, Leddy JJ.

J Head Trauma Rehabil. 2018 Sep/Oct;33(5):E1-E8. doi: 10.1097/HTR.0000000000000421.

PMID:
30080796
6.

The salivary microbiome of diabetic and non-diabetic adults with periodontal disease.

Sabharwal A, Ganley K, Miecznikowski JC, Haase EM, Barnes V, Scannapieco FA.

J Periodontol. 2019 Jan;90(1):26-34. doi: 10.1002/JPER.18-0167. Epub 2018 Sep 5.

PMID:
29999529
7.

Safety and Prognostic Utility of Provocative Exercise Testing in Acutely Concussed Adolescents: A Randomized Trial.

Leddy JJ, Hinds AL, Miecznikowski J, Darling S, Matuszak J, Baker JG, Picano J, Willer B.

Clin J Sport Med. 2018 Jan;28(1):13-20. doi: 10.1097/JSM.0000000000000431.

8.

Dysregulation of miR-181c expression influences recurrence of endometrial endometrioid adenocarcinoma by modulating NOTCH2 expression: An NRG Oncology/Gynecologic Oncology Group study.

Devor EJ, Miecznikowski J, Schickling BM, Gonzalez-Bosquet J, Lankes HA, Thaker P, Argenta PA, Pearl ML, Zweizig SL, Mannel RS, Brown A, Ramirez NC, Ioffe OB, Park KJ, Creasman WT, Birrer MJ, Mutch D, Leslie KK.

Gynecol Oncol. 2017 Dec;147(3):648-653. doi: 10.1016/j.ygyno.2017.09.025. Epub 2017 Sep 29.

9.

Correction: Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes.

Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD.

PLoS One. 2017 Aug 16;12(8):e0183600. doi: 10.1371/journal.pone.0183600. eCollection 2017.

10.

A systematic review of criteria used to define recovery from sport-related concussion in youth athletes.

Haider MN, Leddy JJ, Pavlesen S, Kluczynski M, Baker JG, Miecznikowski JC, Willer BS.

Br J Sports Med. 2018 Sep;52(18):1179-1190. doi: 10.1136/bjsports-2016-096551. Epub 2017 Jul 22. Review.

PMID:
28735282
11.

High stathmin expression is a marker for poor clinical outcome in endometrial cancer: An NRG oncology group/gynecologic oncology group study.

Reyes HD, Miecznikowski J, Gonzalez-Bosquet J, Devor EJ, Zhang Y, Thiel KW, Samuelson MI, McDonald M, Stephan JM, Hanjani P, Guntupalli S, Tewari KS, Backes F, Ramirez N, Fleming GF, Filiaci V, Birrer MJ, Leslie KK.

Gynecol Oncol. 2017 Aug;146(2):247-253. doi: 10.1016/j.ygyno.2017.05.017. Epub 2017 May 19.

12.

Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes.

Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD.

PLoS One. 2017 Mar 2;12(3):e0172647. doi: 10.1371/journal.pone.0172647. eCollection 2017. Erratum in: PLoS One. 2017 Aug 16;12 (8):e0183600.

13.

Gene set analysis controlling for length bias in RNA-seq experiments.

Ren X, Hu Q, Liu S, Wang J, Miecznikowski JC.

BioData Min. 2017 Feb 6;10:5. doi: 10.1186/s13040-017-0125-9. eCollection 2017.

14.

Identification of consistent functional genetic modules.

Miecznikowski JC, Gaile DP, Chen X, Tritchler DL.

Stat Appl Genet Mol Biol. 2016 Mar;15(1):1-18. doi: 10.1515/sagmb-2015-0026.

PMID:
26756095
15.

Dynamics of the Streptococcus gordonii Transcriptome in Response to Medium, Salivary α-Amylase, and Starch.

Haase EM, Feng X, Pan J, Miecznikowski JC, Scannapieco FA.

Appl Environ Microbiol. 2015 Aug 15;81(16):5363-74. doi: 10.1128/AEM.01221-15. Epub 2015 May 29.

16.

A novel characterization of the generalized family wise error rate using empirical null distributions.

Miecznikowski JC, Gaile DP.

Stat Appl Genet Mol Biol. 2014 Jun;13(3):299-322. doi: 10.1515/sagmb-2013-0032.

PMID:
24633753
17.

From small studies to precision medicine: prioritizing candidate biomarkers.

Gaile DP, Miecznikowski JC.

Genome Med. 2013 Nov 29;5(11):104. doi: 10.1186/gm507. eCollection 2013.

18.

Comparing Imputation Procedures for Affymetrix Gene Expression Datasets Using MAQC Datasets.

Rao SS, Shepherd LA, Bruno AE, Liu S, Miecznikowski JC.

Adv Bioinformatics. 2013;2013:790567. doi: 10.1155/2013/790567. Epub 2013 Oct 9.

19.

Evaluation of the Zurich Guidelines and exercise testing for return to play in adolescents following concussion.

Darling SR, Leddy JJ, Baker JG, Williams AJ, Surace A, Miecznikowski JC, Willer B.

Clin J Sport Med. 2014 Mar;24(2):128-33. doi: 10.1097/JSM.0000000000000026.

PMID:
24184849
20.

A purine nucleotide biosynthesis enzyme guanosine monophosphate reductase is a suppressor of melanoma invasion.

Wawrzyniak JA, Bianchi-Smiraglia A, Bshara W, Mannava S, Ackroyd J, Bagati A, Omilian AR, Im M, Fedtsova N, Miecznikowski JC, Moparthy KC, Zucker SN, Zhu Q, Kozlova NI, Berman AE, Hoek KS, Gudkov AV, Shewach DS, Morrison CD, Nikiforov MA.

Cell Rep. 2013 Oct 31;5(2):493-507. doi: 10.1016/j.celrep.2013.09.015. Epub 2013 Oct 17.

21.

Facilitates chromatin transcription complex is an "accelerator" of tumor transformation and potential marker and target of aggressive cancers.

Garcia H, Miecznikowski JC, Safina A, Commane M, Ruusulehto A, Kilpinen S, Leach RW, Attwood K, Li Y, Degan S, Omilian AR, Guryanova O, Papantonopoulou O, Wang J, Buck M, Liu S, Morrison C, Gurova KV.

Cell Rep. 2013 Jul 11;4(1):159-73. doi: 10.1016/j.celrep.2013.06.013. Epub 2013 Jul 3.

22.

FUSIM: a software tool for simulating fusion transcripts.

Bruno AE, Miecznikowski JC, Qin M, Wang J, Liu S.

BMC Bioinformatics. 2013 Jan 16;14:13. doi: 10.1186/1471-2105-14-13.

23.

TAZ induces growth factor-independent proliferation through activation of EGFR ligand amphiregulin.

Yang N, Morrison CD, Liu P, Miecznikowski J, Bshara W, Han S, Zhu Q, Omilian AR, Li X, Zhang J.

Cell Cycle. 2012 Aug 1;11(15):2922-30. doi: 10.4161/cc.21386. Epub 2012 Aug 1.

24.

Studies of iron(II) and iron(III) complexes with fac-N2O, cis-N2O2 and N2O3 donor ligands: models for the 2-His 1-carboxylate motif of non-heme iron monooxygenases.

Cappillino PJ, Miecznikowski JR, Tyler LA, Tarves PC, McNally JS, Lo W, Kasibhatla BS, Krzyaniak MD, McCracken J, Wang F, Armstrong WH, Caradonna JP.

Dalton Trans. 2012 May 14;41(18):5662-77. doi: 10.1039/c2dt11096b. Epub 2012 Mar 21.

PMID:
22434362
25.

Bortezomib mitigates adverse prognosis conferred by Bcl-2 overexpression in patients with relapsed/refractory multiple myeloma.

Ailawadhi S, Miecznikowski J, Gaile DP, Wang D, Sher T, Mulligan G, Bryant B, Wilding GE, Mashtare T, Stein L, Masood A, Neuwirth R, Lee KP, Chanan-Khan A.

Leuk Lymphoma. 2012 Jun;53(6):1174-82. doi: 10.3109/10428194.2011.637212. Epub 2011 Dec 6.

PMID:
22054286
26.

Dietary folate deficiency blocks prostate cancer progression in the TRAMP model.

Bistulfi G, Foster BA, Karasik E, Gillard B, Miecznikowski J, Dhiman VK, Smiraglia DJ.

Cancer Prev Res (Phila). 2011 Nov;4(11):1825-34. doi: 10.1158/1940-6207.CAPR-11-0140. Epub 2011 Aug 11.

27.

PP2A-B56α controls oncogene-induced senescence in normal and tumor human melanocytic cells.

Mannava S, Omilian AR, Wawrzyniak JA, Fink EE, Zhuang D, Miecznikowski JC, Marshall JR, Soengas MS, Sears RC, Morrison CD, Nikiforov MA.

Oncogene. 2012 Mar 22;31(12):1484-92. doi: 10.1038/onc.2011.339. Epub 2011 Aug 8.

28.

Quantifying nuclear p65 as a parameter for NF-κB activation: Correlation between ImageStream cytometry, microscopy, and Western blot.

Maguire O, Collins C, O'Loughlin K, Miecznikowski J, Minderman H.

Cytometry A. 2011 Jun;79(6):461-9. doi: 10.1002/cyto.a.21068. Epub 2011 Apr 25.

29.

A comparison of imputation procedures and statistical tests for the analysis of two-dimensional electrophoresis data.

Miecznikowski JC, Damodaran S, Sellers KF, Coling DE, Salvi R, Rabin RA.

Proteome Sci. 2011 Mar 29;9:14. doi: 10.1186/1477-5956-9-14. No abstract available.

30.

A wholly defined Agilent microarray spike-in dataset.

Zhu Q, Miecznikowski JC, Halfon MS.

Bioinformatics. 2011 May 1;27(9):1284-9. doi: 10.1093/bioinformatics/btr135. Epub 2011 Mar 16.

31.

A new normalizing algorithm for BAC CGH arrays with quality control metrics.

Miecznikowski JC, Gaile DP, Liu S, Shepherd L, Nowak N.

J Biomed Biotechnol. 2011;2011:860732. doi: 10.1155/2011/860732. Epub 2011 Feb 21.

32.

iGenomicViewer: R package for visualisation of high dimension genomic data.

Gaile DP, Shepherd LA, Bruno AE, Liu S, Morrison C, Sucheston L, Miecznikowski J.

Int J Bioinform Res Appl. 2010;6(6):584-93.

PMID:
21354964
33.

A comparison of imputation procedures and statistical tests for the analysis of two-dimensional electrophoresis data.

Miecznikowski JC, Damodaran S, Sellers KF, Rabin RA.

Proteome Sci. 2010 Dec 15;8:66. doi: 10.1186/1477-5956-8-66.

34.

Comparative survival analysis of breast cancer microarray studies identifies important prognostic genetic pathways.

Miecznikowski JC, Wang D, Liu S, Sucheston L, Gold D.

BMC Cancer. 2010 Oct 21;10:573. doi: 10.1186/1471-2407-10-573.

35.

A GOG 210 aCGH study of gain at 1q23 in endometrioid endometrial cancer in the context of racial disparity and outcome.

Morrison C, Miecznikowski J, Darcy KM, Dolce JM, Kandel E, Erwin DO, Liu S, Shepherd L, Cohn D, McMeekin DS, Block AW, Nowak NJ, Maxwell L.

Genes Chromosomes Cancer. 2010 Sep;49(9):791-802. doi: 10.1002/gcc.20782.

PMID:
20607851
36.

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset.

Zhu Q, Miecznikowski JC, Halfon MS.

BMC Bioinformatics. 2010 May 27;11:285. doi: 10.1186/1471-2105-11-285.

37.

Tissue specific DNA methylation of CpG islands in normal human adult somatic tissues distinguishes neural from non-neural tissues.

Ghosh S, Yates AJ, Frühwald MC, Miecznikowski JC, Plass C, Smiraglia D.

Epigenetics. 2010 Aug 16;5(6):527-38. Epub 2010 Aug 16.

38.

Feature detection techniques for preprocessing proteomic data.

Sellers KF, Miecznikowski JC.

Int J Biomed Imaging. 2010;2010:896718. doi: 10.1155/2010/896718. Epub 2010 May 5.

39.

Error control variability in pathway-based microarray analysis.

Gold DL, Miecznikowski JC, Liu S.

Bioinformatics. 2009 Sep 1;25(17):2216-21. doi: 10.1093/bioinformatics/btp385. Epub 2009 Jun 26.

40.

Thermal facilitation of lymphocyte trafficking involves temporal induction of intravascular ICAM-1.

Chen Q, Appenheimer MM, Muhitch JB, Fisher DT, Clancy KA, Miecznikowski JC, Wang WC, Evans SS.

Microcirculation. 2009 Feb;16(2):143-158. doi: 10.1080/10739680802353850. Epub 2008 Dec 27.

41.

Estimating the arm-wise false discovery rate in array comparative genomic hybridization experiments.

Gaile DP, Schifano ED, Miecznikowski JC, Java JJ, Conroy JM, Nowak NJ.

Stat Appl Genet Mol Biol. 2007;6:Article32. Epub 2007 Nov 19.

PMID:
18052915
42.

Challenges in array comparative genomic hybridization for the analysis of cancer samples.

Nowak NJ, Miecznikowski J, Moore SR, Gaile D, Bobadilla D, Smith DD, Kernstine K, Forman SJ, Mhawech-Fauceglia P, Reid M, Stoler D, Loree T, Rigual N, Sullivan M, Weiss LM, Hicks D, Slovak ML.

Genet Med. 2007 Sep;9(9):585-95.

PMID:
17873646
43.

Lights, Camera, Action! systematic variation in 2-D difference gel electrophoresis images.

Sellers KF, Miecznikowski J, Viswanathan S, Minden JS, Eddy WF.

Electrophoresis. 2007 Sep;28(18):3324-32.

PMID:
17854127
45.

An anion-dependent switch in selectivity results from a change of C-H activation mechanism in the reaction of an imidazolium salt with IrH5(PPh3)2.

Appelhans LN, Zuccaccia D, Kovacevic A, Chianese AR, Miecznikowski JR, Macchioni A, Clot E, Eisenstein O, Crabtree RH.

J Am Chem Soc. 2005 Nov 23;127(46):16299-311.

PMID:
16287324

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