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Items: 34

1.

Subsurface Stappia: Success Through Defence, Specialisation and Putative Pressure-Dependent Carbon Fixation.

Vick SHW, Greenfield P, Willows RD, Tetu SG, Midgley DJ, Paulsen IT.

Microb Ecol. 2019 Dec 11. doi: 10.1007/s00248-019-01471-y. [Epub ahead of print]

PMID:
31828390
2.

Genomic and phenotypic insights point to diverse ecological strategies by facultative anaerobes obtained from subsurface coal seams.

Vick SHW, Greenfield P, Tetu SG, Midgley DJ, Paulsen IT.

Sci Rep. 2019 Nov 7;9(1):16186. doi: 10.1038/s41598-019-52846-7.

3.

Who eats what? Unravelling microbial conversion of coal to methane.

Vick SHW, Gong S, Sestak S, Vergara TJ, Pinetown KL, Li Z, Greenfield P, Tetu SG, Midgley DJ, Paulsen IT.

FEMS Microbiol Ecol. 2019 Jul 1;95(7). pii: fiz093. doi: 10.1093/femsec/fiz093.

PMID:
31216572
4.

Microbial communities are sensitive indicators for freshwater sediment copper contamination.

Sutcliffe B, Hose GC, Harford AJ, Midgley DJ, Greenfield P, Paulsen IT, Chariton AA.

Environ Pollut. 2019 Apr;247:1028-1038. doi: 10.1016/j.envpol.2019.01.104. Epub 2019 Jan 30.

PMID:
30823331
5.

Succession Patterns and Physical Niche Partitioning in Microbial Communities from Subsurface Coal Seams.

Vick SHW, Greenfield P, Pinetown KL, Sherwood N, Gong S, Tetu SG, Midgley DJ, Paulsen IT.

iScience. 2019 Feb 22;12:152-167. doi: 10.1016/j.isci.2019.01.011. Epub 2019 Jan 11.

6.

Gamarada debralockiae gen. nov. sp. nov.-the genome of the most widespread Australian ericoid mycorrhizal fungus.

Midgley DJ, Sutcliffe B, Greenfield P, Tran-Dinh N.

Mycorrhiza. 2018 May;28(4):379-389. doi: 10.1007/s00572-018-0835-y. Epub 2018 Apr 27.

PMID:
29700603
7.

Insights from the Genomes of Microbes Thriving in Uranium-Enriched Sediments.

Sutcliffe B, Chariton AA, Harford AJ, Hose GC, Stephenson S, Greenfield P, Midgley DJ, Paulsen IT.

Microb Ecol. 2018 May;75(4):970-984. doi: 10.1007/s00248-017-1102-z. Epub 2017 Nov 11.

PMID:
29128951
8.

In Vitro Response of Rumen Microbiota to the Antimethanogenic Red Macroalga Asparagopsis taxiformis.

Machado L, Tomkins N, Magnusson M, Midgley DJ, de Nys R, Rosewarne CP.

Microb Ecol. 2018 Apr;75(3):811-818. doi: 10.1007/s00248-017-1086-8. Epub 2017 Oct 10.

PMID:
29018917
9.

Effects of uranium concentration on microbial community structure and functional potential.

Sutcliffe B, Chariton AA, Harford AJ, Hose GC, Greenfield P, Elbourne LDH, Oytam Y, Stephenson S, Midgley DJ, Paulsen IT.

Environ Microbiol. 2017 Aug;19(8):3323-3341. doi: 10.1111/1462-2920.13839. Erratum in: Environ Microbiol. 2017 Nov;19(11):4799.

PMID:
28631400
10.

Aspergillus hancockii sp. nov., a biosynthetically talented fungus endemic to southeastern Australian soils.

Pitt JI, Lange L, Lacey AE, Vuong D, Midgley DJ, Greenfield P, Bradbury MI, Lacey E, Busk PK, Pilgaard B, Chooi YH, Piggott AM.

PLoS One. 2017 Apr 5;12(4):e0170254. doi: 10.1371/journal.pone.0170254. eCollection 2017.

11.

First evidence of Pezoloma ericae in Australia: using the Biomes of Australia Soil Environments (BASE) to explore the Australian phylogeography of known ericoid mycorrhizal and root-associated fungi.

Midgley DJ, Greenfield P, Bissett A, Tran-Dinh N.

Mycorrhiza. 2017 Aug;27(6):587-594. doi: 10.1007/s00572-017-0769-9. Epub 2017 Mar 17.

PMID:
28315064
12.

CYP101J2, CYP101J3, and CYP101J4, 1,8-Cineole-Hydroxylating Cytochrome P450 Monooxygenases from Sphingobium yanoikuyae Strain B2.

Unterweger B, Bulach DM, Scoble J, Midgley DJ, Greenfield P, Lyras D, Johanesen P, Dumsday GJ.

Appl Environ Microbiol. 2016 Oct 27;82(22):6507-6517. Print 2016 Nov 15.

13.

Genomic insights into the carbohydrate catabolism of Cairneyella variabilis gen. nov. sp. nov., the first reports from a genome of an ericoid mycorrhizal fungus from the southern hemisphere.

Midgley DJ, Rosewarne CP, Greenfield P, Li D, Vockler CJ, Hitchcock CJ, Sawyer NA, Brett R, Edwards J, Pitt JI, Tran-Dinh N.

Mycorrhiza. 2016 May;26(4):345-52. doi: 10.1007/s00572-016-0683-6. Epub 2016 Feb 9.

PMID:
26861481
14.

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences.

Deshpande V, Wang Q, Greenfield P, Charleston M, Porras-Alfaro A, Kuske CR, Cole JR, Midgley DJ, Tran-Dinh N.

Mycologia. 2016 Jan-Feb;108(1):1-5. doi: 10.3852/14-293. Epub 2015 Nov 9.

PMID:
26553774
15.

Draft Genome Sequence of Ruminoclostridium sp. Ne3, Clostridia from an Enrichment Culture Obtained from Australian Subterranean Termite, Nasutitermes exitiosus.

Wang H, Lin H, Tran-Dinh N, Li D, Greenfield P, Midgley DJ.

Genome Announc. 2015 Apr 23;3(2). pii: e00305-15. doi: 10.1128/genomeA.00305-15.

16.

Draft Genome Sequence of Clostridium sp. Ne2, Clostridia from an Enrichment Culture Obtained from Australian Subterranean Termite, Nasutitermes exitiosus.

Wang H, Lin H, Tran-Dinh N, Li D, Greenfield P, Midgley DJ.

Genome Announc. 2015 Apr 23;3(2). pii: e00304-15. doi: 10.1128/genomeA.00304-15.

17.

Draft Genome Sequence of Clostridium beijerinckii Ne1, Clostridia from an Enrichment Culture Obtained from Australian Subterranean Termite, Nasutitermes exitiosus.

Wang H, Lin H, Tran-Dinh N, Li D, Greenfield P, Midgley DJ.

Genome Announc. 2015 Apr 23;3(2). pii: e00303-15. doi: 10.1128/genomeA.00303-15.

18.

Draft Genome Sequence of Bacillus pumilus Fairview, an Isolate Recovered from a Microbial Methanogenic Enrichment of Coal Seam Gas Formation Water from Queensland, Australia.

Vockler CJ, Greenfield P, Tran-Dinh N, Midgley DJ.

Genome Announc. 2014 Apr 17;2(2). pii: e00279-14. doi: 10.1128/genomeA.00279-14.

19.

Draft Genome Sequence of the Biosurfactant-Producing Bacterium Gordonia amicalis Strain CCMA-559, Isolated from Petroleum-Impacted Sediment.

Domingos DF, Dellagnezze BM, Greenfield P, Reyes LR, Melo IS, Midgley DJ, Oliveira VM.

Genome Announc. 2013 Oct 31;1(6). pii: e00894-13. doi: 10.1128/genomeA.00894-13.

20.

Draft Genome Sequence of Bacillus pumilus CCMA-560, Isolated from an Oil-Contaminated Mangrove Swamp.

Domingos DF, Dellagnezze BM, Greenfield P, Reyes LR, Melo IS, Midgley DJ, Oliveira VM.

Genome Announc. 2013 Sep 12;1(5). pii: e00707-13. doi: 10.1128/genomeA.00707-13.

21.

Draft Genome Sequence of Thermoanaerobacter sp. Strain A7A, Reconstructed from a Metagenome Obtained from a High-Temperature Hydrocarbon Reservoir in the Bass Strait, Australia.

Li D, Greenfield P, Rosewarne CP, Midgley DJ.

Genome Announc. 2013 Sep 12;1(5). pii: e00701-13. doi: 10.1128/genomeA.00701-13.

22.

Draft Genome Sequence of Thermotoga maritima A7A Reconstructed from Metagenomic Sequencing Analysis of a Hydrocarbon Reservoir in the Bass Strait, Australia.

Sutcliffe B, Midgley DJ, Rosewarne CP, Greenfield P, Li D.

Genome Announc. 2013 Sep 5;1(5). pii: e00688-13. doi: 10.1128/genomeA.00688-13.

23.

Morphological and molecular data for Australian Hebeloma species do not support the generic status of Anamika.

Rees BJ, Midgley DJ, Marchant A, Perkins A, Orlovich DA.

Mycologia. 2013 Jul-Aug;105(4):1043-58. doi: 10.3852/12-404. Epub 2013 May 24.

PMID:
23709478
24.

Draft Genome Sequence of Clostridium sp. Maddingley, Isolated from Coal-Seam Gas Formation Water.

Rosewarne CP, Greenfield P, Li D, Tran-Dinh N, Bradbury MI, Midgley DJ, Hendry P.

Genome Announc. 2013 Jan;1(1). pii: e00081-12. doi: 10.1128/genomeA.00081-12. Epub 2013 Jan 24.

25.

Draft Genome Sequence of Methanobacterium sp. Maddingley, Reconstructed from Metagenomic Sequencing of a Methanogenic Microbial Consortium Enriched from Coal-Seam Gas Formation Water.

Rosewarne CP, Greenfield P, Li D, Tran-Dinh N, Midgley DJ, Hendry P.

Genome Announc. 2013 Jan;1(1). pii: e00082-12. doi: 10.1128/genomeA.00082-12. Epub 2013 Jan 24.

26.

Evaluation of autopsy and police reports in the investigation of sudden unexplained death in the young.

Wilms HR, Midgley DJ, Morrow P, Stables S, Crawford J, Skinner JR.

Forensic Sci Med Pathol. 2012 Dec;8(4):380-9. doi: 10.1007/s12024-012-9340-3. Epub 2012 May 22.

PMID:
22615068
27.

Reanalysis and simulation suggest a phylogenetic microarray does not accurately profile microbial communities.

Midgley DJ, Greenfield P, Shaw JM, Oytam Y, Li D, Kerr CA, Hendry P.

PLoS One. 2012;7(3):e33875. doi: 10.1371/journal.pone.0033875. Epub 2012 Mar 22.

28.

Microbial biodiversity in a Malaysian oil field and a systematic comparison with oil reservoirs worldwide.

Li D, Midgley DJ, Ross JP, Oytam Y, Abell GC, Volk H, Daud WA, Hendry P.

Arch Microbiol. 2012 Jun;194(6):513-23. doi: 10.1007/s00203-012-0788-z. Epub 2012 Jan 13.

PMID:
22245906
29.

Novel soil lineages of Archaea are present in semi-arid soils of eastern Australia.

Midgley DJ, Saleeba JA, Stewart MI, McGee PA.

Can J Microbiol. 2007 Jan;53(1):129-38.

PMID:
17496958
30.

Molecular diversity of soil basidiomycete communities in northern-central New South Wales, Australia.

Midgley DJ, Saleeba JA, Stewart MI, Simpson AE, McGee PA.

Mycol Res. 2007 Mar;111(Pt 3):370-8. Epub 2007 Jan 26.

PMID:
17360169
31.

Can soil Chytridiomycota survive and grow in different osmotic potentials?

Gleason FH, Midgley DJ, Letcher PM, McGee PA.

Mycol Res. 2006 Jul;110(Pt 7):869-75.

PMID:
16876703
32.

Access to organic and insoluble sources of phosphorus varies among soil Chytridiomycota.

Midgley DJ, Letcher PM, McGee PA.

Arch Microbiol. 2006 Sep;186(3):211-7. Epub 2006 Jul 26.

PMID:
16868741
33.

Utilisation of carbon substrates by orchid and ericoid mycorrhizal fungi from Australian dry sclerophyll forests.

Midgley DJ, Jordan LA, Saleeba JA, McGee PA.

Mycorrhiza. 2006 May;16(3):175-182. doi: 10.1007/s00572-005-0029-2. Epub 2005 Dec 22.

PMID:
16374622
34.

Utilisation of carbon substrates by multiple genotypes of ericoid mycorrhizal fungal endophytes from eastern Australian Ericaceae.

Midgley DJ, Chambers SM, Cairney JW.

Mycorrhiza. 2004 Aug;14(4):245-51. Epub 2003 Aug 23.

PMID:
12938028

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