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Items: 1 to 50 of 57

1.

Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum.

Castillo D, Andersen N, Kalatzis PG, Middelboe M.

Viruses. 2019 Oct 24;11(11). pii: E983. doi: 10.3390/v11110983.

2.

Effects of allochthonous dissolved organic matter input on microbial composition and nitrogen-cycling genes at two contrasting estuarine sites.

Happel EM, Markussen T, Teikari JE, Huchaiah V, Alneberg J, Andersson AF, Sivonen K, Middelboe M, Kisand V, Riemann L.

FEMS Microbiol Ecol. 2019 Sep 1;95(9). pii: fiz123. doi: 10.1093/femsec/fiz123.

PMID:
31397876
3.

Phenotypic and Genetic Predictors of Pathogenicity and Virulence in Flavobacterium psychrophilum.

Sundell K, Landor L, Nicolas P, Jørgensen J, Castillo D, Middelboe M, Dalsgaard I, Donati VL, Madsen L, Wiklund T.

Front Microbiol. 2019 Jul 24;10:1711. doi: 10.3389/fmicb.2019.01711. eCollection 2019.

4.

Big Impact of the Tiny: Bacteriophage-Bacteria Interactions in Biofilms.

Hansen MF, Svenningsen SL, Røder HL, Middelboe M, Burmølle M.

Trends Microbiol. 2019 Sep;27(9):739-752. doi: 10.1016/j.tim.2019.04.006. Epub 2019 May 22. Review.

PMID:
31128928
5.

Complete Genome Sequence of Vibrio anguillarum Nontailed Bacteriophage NO16.

Kalatzis PG, Carstens AB, Katharios P, Castillo D, Hansen LH, Middelboe M.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00020-19. doi: 10.1128/MRA.00020-19.

6.

P. aeruginosa flow-cell biofilms are enhanced by repeated phage treatments but can be eradicated by phage-ciprofloxacin combination.

Henriksen K, Rørbo N, Rybtke ML, Martinet MG, Tolker-Nielsen T, Høiby N, Middelboe M, Ciofu O.

Pathog Dis. 2019 Mar 1;77(2). pii: ftz011. doi: 10.1093/femspd/ftz011.

PMID:
30821815
7.

Phage defense mechanisms and their genomic and phenotypic implications in the fish pathogen Vibrio anguillarum.

Castillo D, Rørbo N, Jørgensen J, Lange J, Tan D, Kalatzis PG, Svenningsen SL, Middelboe M.

FEMS Microbiol Ecol. 2019 Mar 1;95(3). doi: 10.1093/femsec/fiz004.

PMID:
30624625
8.

Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change.

Markussen T, Happel EM, Teikari JE, Huchaiah V, Alneberg J, Andersson AF, Sivonen K, Riemann L, Middelboe M, Kisand V.

Environ Microbiol. 2018 Aug;20(8):3083-3099. doi: 10.1111/1462-2920.14371. Epub 2018 Sep 19.

PMID:
30084235
9.

Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities.

Castillo D, Kauffman K, Hussain F, Kalatzis P, Rørbo N, Polz MF, Middelboe M.

Sci Rep. 2018 Jul 2;8(1):9973. doi: 10.1038/s41598-018-28326-9.

10.

Exploring the Effect of Phage Therapy in Preventing Vibrio anguillarum Infections in Cod and Turbot Larvae.

Rørbo N, Rønneseth A, Kalatzis PG, Rasmussen BB, Engell-Sørensen K, Kleppen HP, Wergeland HI, Gram L, Middelboe M.

Antibiotics (Basel). 2018 May 16;7(2). pii: E42. doi: 10.3390/antibiotics7020042.

11.

Draft Genome Sequences of Six Vibrio diazotrophicus Strains Isolated from Deep Subsurface Sediments of the Baltic Sea.

Castillo D, Vandieken V, Engelen B, Engelhardt T, Middelboe M.

Genome Announc. 2018 Mar 8;6(10). pii: e00081-18. doi: 10.1128/genomeA.00081-18.

12.

Bacteriophage Interactions with Marine Pathogenic Vibrios: Implications for Phage Therapy.

Kalatzis PG, Castillo D, Katharios P, Middelboe M.

Antibiotics (Basel). 2018 Feb 24;7(1). pii: E15. doi: 10.3390/antibiotics7010015. Review.

13.

Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves.

Katharios P, Kalatzis PG, Kokkari C, Sarropoulou E, Middelboe M.

PLoS One. 2017 Dec 28;12(12):e0190083. doi: 10.1371/journal.pone.0190083. eCollection 2017.

14.

Marine Viruses: Key Players in Marine Ecosystems.

Middelboe M, Brussaard CPD.

Viruses. 2017 Oct 18;9(10). pii: E302. doi: 10.3390/v9100302.

15.

Author Correction: Re-examination of the relationship between marine virus and microbial cell abundances.

Wigington CH, Sonderegger D, Brussaard CPD, Buchan A, Finke JF, Fuhrman JA, Lennon JT, Middelboe M, Suttle CA, Stock C, Wilson WH, Wommack KE, Wilhelm SW, Weitz JS.

Nat Microbiol. 2017 Nov;2(11):1571. doi: 10.1038/s41564-017-0042-1.

PMID:
28974689
16.

Stumbling across the Same Phage: Comparative Genomics of Widespread Temperate Phages Infecting the Fish Pathogen Vibrio anguillarum.

Kalatzis PG, Rørbo NI, Castillo D, Mauritzen JJ, Jørgensen J, Kokkari C, Zhang F, Katharios P, Middelboe M.

Viruses. 2017 May 20;9(5). pii: E122. doi: 10.3390/v9050122.

17.

Comparative Genome Analyses of Vibrio anguillarum Strains Reveal a Link with Pathogenicity Traits.

Castillo D, Alvise PD, Xu R, Zhang F, Middelboe M, Gram L.

mSystems. 2017 Feb 28;2(1). pii: e00001-17. doi: 10.1128/mSystems.00001-17. eCollection 2017 Jan-Feb.

18.

Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis.

Sonnenschein EC, Nielsen KF, D'Alvise P, Porsby CH, Melchiorsen J, Heilmann J, Kalatzis PG, López-Pérez M, Bunk B, Spröer C, Middelboe M, Gram L.

ISME J. 2017 Feb;11(2):588. doi: 10.1038/ismej.2016.125. No abstract available.

19.

Genomic diversity of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum.

Castillo D, Middelboe M.

FEMS Microbiol Lett. 2016 Dec;363(24). pii: fnw272. doi: 10.1093/femsle/fnw272. Epub 2016 Dec 2.

PMID:
27915247
20.

Quantification of Viral and Prokaryotic Production Rates in Benthic Ecosystems: A Methods Comparison.

Rastelli E, Dell'Anno A, Corinaldesi C, Middelboe M, Noble RT, Danovaro R.

Front Microbiol. 2016 Sep 22;7:1501. eCollection 2016.

21.

Re-examination of the relationship between marine virus and microbial cell abundances.

Wigington CH, Sonderegger D, Brussaard CP, Buchan A, Finke JF, Fuhrman JA, Lennon JT, Middelboe M, Suttle CA, Stock C, Wilson WH, Wommack KE, Wilhelm SW, Weitz JS.

Nat Microbiol. 2016 Jan 25;1:15024. doi: 10.1038/nmicrobiol.2015.24. Erratum in: Nat Microbiol. 2017 Nov;2(11):1571.

PMID:
27572161
22.

Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis.

Sonnenschein EC, Nielsen KF, D'Alvise P, Porsby CH, Melchiorsen J, Heilmann J, Kalatzis PG, López-Pérez M, Bunk B, Spröer C, Middelboe M, Gram L.

ISME J. 2017 Feb;11(2):569-583. doi: 10.1038/ismej.2016.111. Epub 2016 Aug 23. Erratum in: ISME J. 2017 Feb;11(2):588.

23.

Comparative Genome Analysis Provides Insights into the Pathogenicity of Flavobacterium psychrophilum.

Castillo D, Christiansen RH, Dalsgaard I, Madsen L, Espejo R, Middelboe M.

PLoS One. 2016 Apr 12;11(4):e0152515. doi: 10.1371/journal.pone.0152515. eCollection 2016.

24.

Predation and selection for antibiotic resistance in natural environments.

Leisner JJ, Jørgensen NO, Middelboe M.

Evol Appl. 2016 Jan 25;9(3):427-34. doi: 10.1111/eva.12353. eCollection 2016 Mar.

25.

Effect of Bacteriophages on the Growth of Flavobacterium psychrophilum and Development of Phage-Resistant Strains.

Christiansen RH, Madsen L, Dalsgaard I, Castillo D, Kalatzis PG, Middelboe M.

Microb Ecol. 2016 May;71(4):845-59. doi: 10.1007/s00248-016-0737-5. Epub 2016 Feb 22.

PMID:
26898695
26.

Draft Genome Sequences of the Fish Pathogen Vibrio harveyi Strains VH2 and VH5.

Castillo D, D'Alvise P, Middelboe M, Gram L, Liu S, Kalatzis PG, Kokkari C, Katharios P.

Genome Announc. 2015 Sep 17;3(5). pii: e01062-15. doi: 10.1128/genomeA.01062-15.

27.

Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats.

Carreira C, Piel T, Staal M, Stuut JB, Middelboe M, Brussaard CP.

Springerplus. 2015 May 23;4:239. doi: 10.1186/s40064-015-0977-8. eCollection 2015.

28.

Draft Genome Sequence of Vibrio parahaemolyticus VH3, Isolated from an Aquaculture Environment in Greece.

Castillo D, Jun JW, D'Alvise P, Middelboe M, Gram L, Liu S, Katharios P.

Genome Announc. 2015 Jul 2;3(4). pii: e00731-15. doi: 10.1128/genomeA.00731-15.

29.

Draft Genome Sequences of Vibrio alginolyticus Strains V1 and V2, Opportunistic Marine Pathogens.

Castillo D, D'Alvise P, Kalatzis PG, Kokkari C, Middelboe M, Gram L, Liu S, Katharios P.

Genome Announc. 2015 Jul 2;3(4). pii: e00729-15. doi: 10.1128/genomeA.00729-15.

30.

Quorum Sensing Determines the Choice of Antiphage Defense Strategy in Vibrio anguillarum.

Tan D, Svenningsen SL, Middelboe M.

mBio. 2015 Jun 16;6(3):e00627. doi: 10.1128/mBio.00627-15.

31.

Vibriophages Differentially Influence Biofilm Formation by Vibrio anguillarum Strains.

Tan D, Dahl A, Middelboe M.

Appl Environ Microbiol. 2015 Jul;81(13):4489-97. doi: 10.1128/AEM.00518-15. Epub 2015 Apr 24.

32.

Disruption of photoautotrophic intertidal mats by filamentous fungi.

Carreira C, Staal M, Falkoski D, de Vries RP, Middelboe M, Brussaard CP.

Environ Microbiol. 2015 Aug;17(8):2910-21. doi: 10.1111/1462-2920.12835. Epub 2015 Apr 15.

PMID:
25728280
33.

A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes.

Weitz JS, Stock CA, Wilhelm SW, Bourouiba L, Coleman ML, Buchan A, Follows MJ, Fuhrman JA, Jover LF, Lennon JT, Middelboe M, Sonderegger DL, Suttle CA, Taylor BP, Frede Thingstad T, Wilson WH, Eric Wommack K.

ISME J. 2015 Jun;9(6):1352-64. doi: 10.1038/ismej.2014.220. Epub 2015 Jan 30.

34.

Counting viruses and bacteria in photosynthetic microbial mats.

Carreira C, Staal M, Middelboe M, Brussaard CP.

Appl Environ Microbiol. 2015 Mar;81(6):2149-55. doi: 10.1128/AEM.02863-14. Epub 2015 Jan 16.

35.

Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors.

Castillo D, Christiansen RH, Dalsgaard I, Madsen L, Middelboe M.

Appl Environ Microbiol. 2015 Feb;81(3):1157-67. doi: 10.1128/AEM.03699-14. Epub 2014 Dec 5.

36.

Detection and quantification of Flavobacterium psychrophilum-specific bacteriophages in vivo in rainbow trout upon oral administration: implications for disease control in aquaculture.

Christiansen RH, Dalsgaard I, Middelboe M, Lauritsen AH, Madsen L.

Appl Environ Microbiol. 2014 Dec;80(24):7683-93. doi: 10.1128/AEM.02386-14. Epub 2014 Oct 3.

37.

Vibriophages and their interactions with the fish pathogen Vibrio anguillarum.

Tan D, Gram L, Middelboe M.

Appl Environ Microbiol. 2014 May;80(10):3128-40. doi: 10.1128/AEM.03544-13. Epub 2014 Mar 7.

38.

Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: patterns of susceptibility to phage infection and phage host range.

Castillo D, Christiansen RH, Espejo R, Middelboe M.

Microb Ecol. 2014 May;67(4):748-57. doi: 10.1007/s00248-014-0375-8. Epub 2014 Feb 21.

PMID:
24557506
39.

Genomic structure of bacteriophage 6H and its distribution as prophage in Flavobacterium psychrophilum strains.

Castillo D, Espejo R, Middelboe M.

FEMS Microbiol Lett. 2014 Feb;351(1):51-58. doi: 10.1111/1574-6968.12342. Epub 2013 Dec 11.

40.

Low virus to prokaryote ratios in the cold: benthic viruses and prokaryotes in a subpolar marine ecosystem (Hornsund, Svalbard).

Wróbel B, Filippini M, Piwowarczyk J, Kedra M, Kuliński K, Middelboe M.

Int Microbiol. 2013 Mar;16(1):45-52.

41.

Increased acidification has a profound effect on the interactions between the cyanobacterium Synechococcus sp. WH7803 and its viruses.

Traving SJ, Clokie MR, Middelboe M.

FEMS Microbiol Ecol. 2014 Jan;87(1):133-41. doi: 10.1111/1574-6941.12199. Epub 2013 Sep 30.

42.

Antagonistic coevolution of marine planktonic viruses and their hosts.

Martiny JB, Riemann L, Marston MF, Middelboe M.

Ann Rev Mar Sci. 2014;6:393-414. doi: 10.1146/annurev-marine-010213-135108. Epub 2013 Aug 28. Review.

PMID:
23987913
43.

Dispersal and survival of Flavobacterium psychrophilum phages in vivo in rainbow trout and in vitro under laboratory conditions: implications for their use in phage therapy.

Madsen L, Bertelsen SK, Dalsgaard I, Middelboe M.

Appl Environ Microbiol. 2013 Aug;79(16):4853-61. doi: 10.1128/AEM.00509-13. Epub 2013 Jun 7.

44.

Diversity of Flavobacterium psychrophilum and the potential use of its phages for protection against bacterial cold water disease in salmonids.

Castillo D, Higuera G, Villa M, Middelboe M, Dalsgaard I, Madsen L, Espejo RT.

J Fish Dis. 2012 Mar;35(3):193-201. doi: 10.1111/j.1365-2761.2011.01336.x.

PMID:
22324343
45.

Proteinase production in Pseudomonas fluorescens ON2 is affected by carbon sources and allows surface-attached but not planktonic cells to utilize protein for growth in lake water.

Nicolaisen MH, Worm J, Jørgensen NO, Middelboe M, Nybroe O.

FEMS Microbiol Ecol. 2012 Apr;80(1):168-78. doi: 10.1111/j.1574-6941.2011.01285.x. Epub 2012 Jan 16.

46.

Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains.

Holmfeldt K, Odić D, Sullivan MB, Middelboe M, Riemann L.

Appl Environ Microbiol. 2012 Feb;78(3):892-4. doi: 10.1128/AEM.06580-11. Epub 2011 Dec 2.

47.

Bacteriophages drive strain diversification in a marine Flavobacterium: implications for phage resistance and physiological properties.

Middelboe M, Holmfeldt K, Riemann L, Nybroe O, Haaber J.

Environ Microbiol. 2009 Aug;11(8):1971-82. doi: 10.1111/j.1462-2920.2009.01920.x. Epub 2009 Mar 31.

PMID:
19508553
48.

Viral lysis of Phaeocystis pouchetii: implications for algal population dynamics and heterotrophic C, N and P cycling.

Haaber J, Middelboe M.

ISME J. 2009 Apr;3(4):430-41. doi: 10.1038/ismej.2008.125. Epub 2009 Jan 8.

PMID:
19129863
49.

Isolation and characterization of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum.

Stenholm AR, Dalsgaard I, Middelboe M.

Appl Environ Microbiol. 2008 Jul;74(13):4070-8. doi: 10.1128/AEM.00428-08. Epub 2008 May 9.

50.

Global-scale processes with a nanoscale drive: the role of marine viruses.

Brussaard CP, Wilhelm SW, Thingstad F, Weinbauer MG, Bratbak G, Heldal M, Kimmance SA, Middelboe M, Nagasaki K, Paul JH, Schroeder DC, Suttle CA, Vaqué D, Wommack KE.

ISME J. 2008 Jun;2(6):575-8. doi: 10.1038/ismej.2008.31. Epub 2008 Apr 3. No abstract available.

PMID:
18385772

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