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Long-term prevalence data reveals spillover dynamics in a multi-host (Artemia), multi-parasite (Microsporidia) community.

Lievens EJP, Rode NO, Landes J, Segard A, Jabbour-Zahab R, Michalakis Y, Lenormand T.

Int J Parasitol. 2019 May;49(6):471-480. doi: 10.1016/j.ijpara.2019.01.002. Epub 2019 Mar 21.


A multicellular way of life for a multipartite virus.

Sicard A, Pirolles E, Gallet R, Vernerey MS, Yvon M, Urbino C, Peterschmitt M, Gutierrez S, Michalakis Y, Blanc S.

Elife. 2019 Mar 12;8. pii: e43599. doi: 10.7554/eLife.43599.


Editorial overview: Multicomponent viral systems.

Michalakis Y, Blanc S.

Curr Opin Virol. 2018 Dec;33:vi-ix. doi: 10.1016/j.coviro.2018.11.009. No abstract available.


Decomposing parasite fitness reveals the basis of specialization in a two-host, two-parasite system.

Lievens EJP, Perreau J, Agnew P, Michalakis Y, Lenormand T.

Evol Lett. 2018 Jul 11;2(4):390-405. doi: 10.1002/evl3.65. eCollection 2018 Aug.


Vector-transmission of plant viruses and constraints imposed by virus-vector interactions.

Gallet R, Michalakis Y, Blanc S.

Curr Opin Virol. 2018 Dec;33:144-150. doi: 10.1016/j.coviro.2018.08.005. Epub 2018 Sep 14. Review.


Small Bottleneck Size in a Highly Multipartite Virus during a Complete Infection Cycle.

Gallet R, Fabre F, Thébaud G, Sofonea MT, Sicard A, Blanc S, Michalakis Y.

J Virol. 2018 Jun 29;92(14). pii: e00139-18. doi: 10.1128/JVI.00139-18. Print 2018 Jul 15.


The Number of Target Molecules of the Amplification Step Limits Accuracy and Sensitivity in Ultradeep-Sequencing Viral Population Studies.

Gallet R, Fabre F, Michalakis Y, Blanc S.

J Virol. 2017 Jul 27;91(16). pii: e00561-17. doi: 10.1128/JVI.00561-17. Print 2017 Aug 15.


Exposing the diversity of multiple infection patterns.

Sofonea MT, Alizon S, Michalakis Y.

J Theor Biol. 2017 Apr 21;419:278-289. doi: 10.1016/j.jtbi.2017.02.011. Epub 2017 Feb 11.


The Strange Lifestyle of Multipartite Viruses.

Sicard A, Michalakis Y, Gutiérrez S, Blanc S.

PLoS Pathog. 2016 Nov 3;12(11):e1005819. doi: 10.1371/journal.ppat.1005819. eCollection 2016 Nov. Review.


Manipulation of hosts and vectors by plant viruses and impact of the environment.

Blanc S, Michalakis Y.

Curr Opin Insect Sci. 2016 Aug;16:36-43. doi: 10.1016/j.cois.2016.05.007. Epub 2016 May 13. Review.


Maladaptive Sex Ratio Adjustment in the Invasive Brine Shrimp Artemia franciscana.

Lievens EJ, Henriques GJ, Michalakis Y, Lenormand T.

Curr Biol. 2016 Jun 6;26(11):1463-7. doi: 10.1016/j.cub.2016.03.074. Epub 2016 May 12.


Comment on "Large Bottleneck Size in Cauliflower Mosaic Virus Populations during Host Plant Colonization" by Monsion et al. (2008).

Thébaud G, Michalakis Y.

PLoS Pathog. 2016 Apr 14;12(4):e1005512. doi: 10.1371/journal.ppat.1005512. eCollection 2016 Apr. No abstract available.


Circulative Nonpropagative Aphid Transmission of Nanoviruses: an Oversimplified View.

Sicard A, Zeddam JL, Yvon M, Michalakis Y, Gutiérrez S, Blanc S.

J Virol. 2015 Oct;89(19):9719-26. doi: 10.1128/JVI.00780-15. Epub 2015 Jul 15.


The Multiplicity of Cellular Infection Changes Depending on the Route of Cell Infection in a Plant Virus.

Gutiérrez S, Pirolles E, Yvon M, Baecker V, Michalakis Y, Blanc S.

J Virol. 2015 Sep;89(18):9665-75. doi: 10.1128/JVI.00537-15. Epub 2015 Jul 15.


From within-host interactions to epidemiological competition: a general model for multiple infections.

Sofonea MT, Alizon S, Michalakis Y.

Philos Trans R Soc Lond B Biol Sci. 2015 Aug 19;370(1675). pii: 20140303. doi: 10.1098/rstb.2014.0303.


Adaptive virulence evolution: the good old fitness-based approach.

Alizon S, Michalakis Y.

Trends Ecol Evol. 2015 May;30(5):248-54. doi: 10.1016/j.tree.2015.02.009. Epub 2015 Mar 30. Review.


The consequences of co-infections for parasite transmission in the mosquito Aedes aegypti.

Duncan AB, Agnew P, Noel V, Michalakis Y.

J Anim Ecol. 2015 Mar;84(2):498-508. doi: 10.1111/1365-2656.12302. Epub 2014 Nov 15.


Sex in an uncertain world: environmental stochasticity helps restore competitive balance between sexually and asexually reproducing populations.

Park AW, Vandekerkhove J, Michalakis Y.

J Evol Biol. 2014 Aug;27(8):1650-61. doi: 10.1111/jeb.12419. Epub 2014 May 19.


Stress dependent infection cost of the human malaria agent Plasmodium falciparum on its natural vector Anopheles coluzzii.

Sangare I, Dabire R, Yameogo B, Da DF, Michalakis Y, Cohuet A.

Infect Genet Evol. 2014 Jul;25:57-65. doi: 10.1016/j.meegid.2014.04.006. Epub 2014 Apr 16.


Damped long-term host-parasite Red Queen coevolutionary dynamics: a reflection of dilution effects?

Decaestecker E, De Gersem H, Michalakis Y, Raeymaekers JA.

Ecol Lett. 2013 Dec;16(12):1455-62. doi: 10.1111/ele.12186. Epub 2013 Oct 1.


Gene copy number is differentially regulated in a multipartite virus.

Sicard A, Yvon M, Timchenko T, Gronenborn B, Michalakis Y, Gutierrez S, Blanc S.

Nat Commun. 2013;4:2248. doi: 10.1038/ncomms3248.


Reduction of leaf area and symptom severity as proxies of disease-induced plant mortality: the example of the Cauliflower mosaic virus infecting two Brassicaceae hosts.

Doumayrou J, Leblaye S, Froissart R, Michalakis Y.

Virus Res. 2013 Sep;176(1-2):91-100. doi: 10.1016/j.virusres.2013.05.008. Epub 2013 Jun 3.


Cytological, molecular and life cycle characterization of Anostracospora rigaudi n. g., n. sp. and Enterocytospora artemiae n. g., n. sp., two new microsporidian parasites infecting gut tissues of the brine shrimp Artemia.

Rode NO, Landes J, Lievens EJ, Flaven E, Segard A, Jabbour-Zahab R, Michalakis Y, Agnew P, Vivarès CP, Lenormand T.

Parasitology. 2013 Aug;140(9):1168-85. doi: 10.1017/S0031182013000668. Epub 2013 Jun 4.


An experimental test of the transmission-virulence trade-off hypothesis in a plant virus.

Doumayrou J, Avellan A, Froissart R, Michalakis Y.

Evolution. 2013 Feb;67(2):477-86. doi: 10.1111/j.1558-5646.2012.01780.x. Epub 2012 Sep 17.


Multiple infections and the evolution of virulence.

Alizon S, de Roode JC, Michalakis Y.

Ecol Lett. 2013 Apr;16(4):556-67. doi: 10.1111/ele.12076. Epub 2013 Jan 24. Review.


Studying fitness cost of Plasmodium falciparum infection in malaria vectors: validation of an appropriate negative control.

Sangare I, Michalakis Y, Yameogo B, Dabire R, Morlais I, Cohuet A.

Malar J. 2013 Jan 2;12:2. doi: 10.1186/1475-2875-12-2.


Circulating virus load determines the size of bottlenecks in viral populations progressing within a host.

Gutiérrez S, Yvon M, Pirolles E, Garzo E, Fereres A, Michalakis Y, Blanc S.

PLoS Pathog. 2012;8(11):e1003009. doi: 10.1371/journal.ppat.1003009. Epub 2012 Nov 1.


Virus population bottlenecks during within-host progression and host-to-host transmission.

Gutiérrez S, Michalakis Y, Blanc S.

Curr Opin Virol. 2012 Oct;2(5):546-55. doi: 10.1016/j.coviro.2012.08.001. Epub 2012 Aug 22. Review.


Proteome of Aedes aegypti in response to infection and coinfection with microsporidian parasites.

Duncan AB, Agnew P, Noel V, Demettre E, Seveno M, Brizard JP, Michalakis Y.

Ecol Evol. 2012 Apr;2(4):681-94. doi: 10.1002/ece3.199.


The transmission-virulence trade-off and superinfection: comments to Smith.

Alizon S, Michalakis Y.

Evolution. 2011 Dec;65(12):3633-8; discussion 3639-41. doi: 10.1111/j.1558-5646.2011.01432.x. Epub 2011 Sep 9. No abstract available.


Inclusive fitness theory and eusociality.

Abbot P, Abe J, Alcock J, Alizon S, Alpedrinha JA, Andersson M, Andre JB, van Baalen M, Balloux F, Balshine S, Barton N, Beukeboom LW, Biernaskie JM, Bilde T, Borgia G, Breed M, Brown S, Bshary R, Buckling A, Burley NT, Burton-Chellew MN, Cant MA, Chapuisat M, Charnov EL, Clutton-Brock T, Cockburn A, Cole BJ, Colegrave N, Cosmides L, Couzin ID, Coyne JA, Creel S, Crespi B, Curry RL, Dall SR, Day T, Dickinson JL, Dugatkin LA, El Mouden C, Emlen ST, Evans J, Ferriere R, Field J, Foitzik S, Foster K, Foster WA, Fox CW, Gadau J, Gandon S, Gardner A, Gardner MG, Getty T, Goodisman MA, Grafen A, Grosberg R, Grozinger CM, Gouyon PH, Gwynne D, Harvey PH, Hatchwell BJ, Heinze J, Helantera H, Helms KR, Hill K, Jiricny N, Johnstone RA, Kacelnik A, Kiers ET, Kokko H, Komdeur J, Korb J, Kronauer D, Kümmerli R, Lehmann L, Linksvayer TA, Lion S, Lyon B, Marshall JA, McElreath R, Michalakis Y, Michod RE, Mock D, Monnin T, Montgomerie R, Moore AJ, Mueller UG, Noë R, Okasha S, Pamilo P, Parker GA, Pedersen JS, Pen I, Pfennig D, Queller DC, Rankin DJ, Reece SE, Reeve HK, Reuter M, Roberts G, Robson SK, Roze D, Rousset F, Rueppell O, Sachs JL, Santorelli L, Schmid-Hempel P, Schwarz MP, Scott-Phillips T, Shellmann-Sherman J, Sherman PW, Shuker DM, Smith J, Spagna JC, Strassmann B, Suarez AV, Sundström L, Taborsky M, Taylor P, Thompson G, Tooby J, Tsutsui ND, Tsuji K, Turillazzi S, Ubeda F, Vargo EL, Voelkl B, Wenseleers T, West SA, West-Eberhard MJ, Westneat DF, Wiernasz DC, Wild G, Wrangham R, Young AJ, Zeh DW, Zeh JA, Zink A.

Nature. 2011 Mar 24;471(7339):E1-4; author reply E9-10. doi: 10.1038/nature09831.


Dynamics of the multiplicity of cellular infection in a plant virus.

Gutiérrez S, Yvon M, Thébaud G, Monsion B, Michalakis Y, Blanc S.

PLoS Pathog. 2010 Sep 16;6(9):e1001113. doi: 10.1371/journal.ppat.1001113.


The virulence-transmission trade-off in vector-borne plant viruses: a review of (non-)existing studies.

Froissart R, Doumayrou J, Vuillaume F, Alizon S, Michalakis Y.

Philos Trans R Soc Lond B Biol Sci. 2010 Jun 27;365(1548):1907-18. doi: 10.1098/rstb.2010.0068. Review.


Parasites and deleterious mutations: interactions influencing the evolutionary maintenance of sex.

Park AW, Jokela J, Michalakis Y.

J Evol Biol. 2010 May;23(5):1013-23. doi: 10.1111/j.1420-9101.2010.01972.x. Epub 2010 Mar 19.


Malaria: Evolution in vector control.

Michalakis Y, Renaud F.

Nature. 2009 Nov 19;462(7271):298-300. doi: 10.1038/462298a. No abstract available.


Evaluation of elevated ploidy and asexual reproduction as alternative explanations for geographic parthenogenesis in Eucypris virens ostracods.

Adolfsson S, Michalakis Y, Paczesniak D, Bode SN, Butlin RK, Lamatsch DK, Martins MJ, Schmit O, Vandekerkhove J, Jokela J.

Evolution. 2010 Apr 1;64(4):986-97. doi: 10.1111/j.1558-5646.2009.00872.x. Epub 2009 Oct 23.


Rapid evolution of Wolbachia density in insecticide resistant Culex pipiens.

Echaubard P, Duron O, Agnew P, Sidobre C, Noël V, Weill M, Michalakis Y.

Heredity (Edinb). 2010 Jan;104(1):15-9. doi: 10.1038/hdy.2009.100.


Parental crowding influences life-history traits in Locusta migratoria females.

Chapuis MP, Crespin L, Estoup A, Augé-Sabatier A, Foucart A, Lecoq M, Michalakis Y.

Bull Entomol Res. 2010 Feb;100(1):9-17. doi: 10.1017/S0007485309006853. Epub 2009 May 5.


Outbreaks, gene flow and effective population size in the migratory locust, Locusta migratoria: a regional-scale comparative survey.

Chapuis MP, Loiseau A, Michalakis Y, Lecoq M, Franc A, Estoup A.

Mol Ecol. 2009 Mar;18(5):792-800. doi: 10.1111/j.1365-294X.2008.04072.x.


Helper component-transcomplementation in the vector transmission of plant viruse.

Froissart R, Michalakis Y, Blanc S.

Phytopathology. 2002 Jun;92(6):576-9. doi: 10.1094/PHYTO.2002.92.6.576.


Large bottleneck size in Cauliflower Mosaic Virus populations during host plant colonization.

Monsion B, Froissart R, Michalakis Y, Blanc S.

PLoS Pathog. 2008 Oct;4(10):e1000174. doi: 10.1371/journal.ppat.1000174. Epub 2008 Oct 10.


Effects of environmental heterogeneity on victim-exploiter coevolution.

Gavrilets S, Michalakis Y.

Evolution. 2008 Dec;62(12):3100-16. doi: 10.1111/j.1558-5646.2008.00513.x. Epub 2008 Sep 11.


Coevolution between parasite virulence and host life-history traits.

Gandon S, Agnew P, Michalakis Y.

Am Nat. 2002 Sep;160(3):374-88. doi: 10.1086/341525.


Do outbreaks affect genetic population structure? A worldwide survey in Locusta migratoria, a pest plagued by microsatellite null alleles.

Chapuis MP, Lecoq M, Michalakis Y, Loiseau A, Sword GA, Piry S, Estoup A.

Mol Ecol. 2008 Aug;17(16):3640-53. doi: 10.1111/j.1365-294X.2008.03869.x. Epub 2008 Jul 16.


Genetic variation for parental effects on the propensity to gregarise in Locusta migratoria.

Chapuis MP, Estoup A, Augé-Sabatier A, Foucart A, Lecoq M, Michalakis Y.

BMC Evol Biol. 2008 Feb 1;8:37. doi: 10.1186/1471-2148-8-37.


Genetic, ecological, behavioral and geographic differentiation of populations in a thistle weevil: implications for speciation and biocontrol.

Olivieri I, Singer MC, Magalhães S, Courtiol A, Dubois Y, Carbonell D, Justy F, Beldade P, Parmesan C, Michalakis Y.

Evol Appl. 2008 Feb;1(1):112-28. doi: 10.1111/j.1752-4571.2007.00010.x.


Virulence and resistance in a mosquito-microsporidium interaction.

Michalakis Y, Bédhomme S, Biron DG, Rivero A, Sidobre C, Agnew P.

Evol Appl. 2008 Feb;1(1):49-56. doi: 10.1111/j.1752-4571.2007.00004.x.


Resource depletion in Aedes aegypti mosquitoes infected by the microsporidia Vavraia culicis.

Rivero A, Agnew P, Bedhomme S, Sidobre C, Michalakis Y.

Parasitology. 2007 Sep;134(Pt 10):1355-62. Epub 2007 Jul 18.


Santa rosalia revisited: or why are there so many kinds of parasites in ;the garden of earthly delights'?

de Meeûs T, Michalakis Y, Renaud F.

Parasitol Today. 1998 Jan;14(1):10-3.


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