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Items: 1 to 50 of 118

1.

High-Dimensional Posterior Consistency in Bayesian Vector Autoregressive Models.

Ghosh S, Khare K, Michailidis G.

J Am Stat Assoc. 2019;114(526):735-748. doi: 10.1080/01621459.2018.1437043. Epub 2018 Aug 7.

PMID:
31474783
2.

Erratum to "Distinct Lipidomic Landscapes Associated with Clinical Stages of Urothelial Cancer of the Bladder" [Eur Urol Focus 2018;4:907-915].

Piyarathna DWB, Rajendiran TM, Putluri V, Vantaku V, Soni T, von Rundstedt FC, Donepudi SR, Jin F, Maity S, Ambati CR, Dong J, Gödde D, Roth S, Störkel S, Degener S, Michailidis G, Lerner SP, Pennathur S, Lotan Y, Coarfa C, Sreekumar A, Putluri N.

Eur Urol Focus. 2019 Aug 29. pii: S2405-4569(19)30267-6. doi: 10.1016/j.euf.2019.08.010. [Epub ahead of print] No abstract available.

PMID:
31474581
3.

A study protocol of vaginal laser therapy in gynecological cancer survivors.

Athanasiou S, Pitsouni E, Grigoriadis T, Michailidis G, Tsiveleka A, Rodolakis A, Loutradis D.

Climacteric. 2019 Sep 2:1-6. doi: 10.1080/13697137.2019.1646720. [Epub ahead of print]

PMID:
31474161
4.

Methionine-Homocysteine Pathway in African-American Prostate Cancer.

Gohlke JH, Lloyd SM, Basu S, Putluri V, Vareed SK, Rasaily U, Piyarathna DWB, Fuentes H, Rajendiran TM, Dorsey TH, Ambati CR, Sonavane R, Karanam B, Bhowmik SK, Kittles R, Ambs S, Mims MP, Ittmann M, Jones JA, Palapattu G, Putluri N, Michailidis G, Sreekumar A.

JNCI Cancer Spectr. 2019 Apr 25;3(2):pkz019. doi: 10.1093/jncics/pkz019. eCollection 2019 Jun.

5.

Impaired Amino Acid and TCA Metabolism and Cardiovascular Autonomic Neuropathy Progression in Type 1 Diabetes.

Mathew AV, Jaiswal M, Ang L, Michailidis G, Pennathur S, Pop-Busui R.

Diabetes. 2019 Jul 23. pii: db190145. doi: 10.2337/db19-0145. [Epub ahead of print]

PMID:
31337616
6.

ERR1 and PGC1α associated mitochondrial alterations correlate with pan-cancer disparity in African Americans.

Piyarathna DWB, Balasubramanian A, Arnold JM, Lloyd SM, Karanam B, Castro P, Ittmann MM, Putluri N, Navone N, Jones JA, Yu W, Sandulache VC, Sikora AG, Michailidis G, Sreekumar A.

J Clin Invest. 2019 Mar 28;129(6):2351-2356. doi: 10.1172/JCI127579.

7.

On the formation of Dodd-Frank Act derivatives regulations.

Mankad S, Michailidis G, Kirilenko A.

PLoS One. 2019 Mar 25;14(3):e0213730. doi: 10.1371/journal.pone.0213730. eCollection 2019.

8.

Untargeted Metabolomics Differentiates l-Carnitine Treated Septic Shock 1-Year Survivors and Nonsurvivors.

Evans CR, Karnovsky A, Puskarich MA, Michailidis G, Jones AE, Stringer KA.

J Proteome Res. 2019 May 3;18(5):2004-2011. doi: 10.1021/acs.jproteome.8b00774. Epub 2019 Apr 1.

PMID:
30895797
9.

Differential network enrichment analysis reveals novel lipid pathways in chronic kidney disease.

Ma J, Karnovsky A, Afshinnia F, Wigginton J, Rader DJ, Natarajan L, Sharma K, Porter AC, Rahman M, He J, Hamm L, Shafi T, Gipson D, Gadegbeku C, Feldman H, Michailidis G, Pennathur S.

Bioinformatics. 2019 Feb 14. pii: btz114. doi: 10.1093/bioinformatics/btz114. [Epub ahead of print]

PMID:
30887029
10.

Therapeutic Lifestyle Changes Improve HDL Function by Inhibiting Myeloperoxidase-Mediated Oxidation in Patients With Metabolic Syndrome.

Mathew AV, Li L, Byun J, Guo Y, Michailidis G, Jaiswal M, Chen YE, Pop-Busui R, Pennathur S.

Diabetes Care. 2018 Nov;41(11):2431-2437. doi: 10.2337/dc18-0049. Epub 2018 Sep 10.

PMID:
30201848
11.

Core community structure recovery and phase transition detection in temporally evolving networks.

Bao W, Michailidis G.

Sci Rep. 2018 Aug 28;8(1):12938. doi: 10.1038/s41598-018-29964-9.

12.

Elevated lipoxygenase and cytochrome P450 products predict progression of chronic kidney disease.

Afshinnia F, Zeng L, Byun J, Wernisch S, Deo R, Chen J, Hamm L, Miller ER, Rhee EP, Fischer MJ, Sharma K, Feldman HI, Michailidis G, Pennathur S; CRIC Study Investigators .

Nephrol Dial Transplant. 2018 Jul 25. doi: 10.1093/ndt/gfy232. [Epub ahead of print]

PMID:
30137494
13.

Quantifying heterogeneity of expression data based on principal components.

Yang Z, Michailidis G.

Bioinformatics. 2019 Feb 15;35(4):553-559. doi: 10.1093/bioinformatics/bty671.

PMID:
30060088
14.

Exponentially time decaying susceptible-informed (SIT) model for information diffusion process on networks.

Bao W, Michailidis G.

Chaos. 2018 Jun;28(6):063129. doi: 10.1063/1.5023925.

PMID:
29960402
15.

Variable selection in omics data: A practical evaluation of small sample sizes.

Kirpich A, Ainsworth EA, Wedow JM, Newman JRB, Michailidis G, McIntyre LM.

PLoS One. 2018 Jun 21;13(6):e0197910. doi: 10.1371/journal.pone.0197910. eCollection 2018.

16.

Lipidomics and Biomarker Discovery in Kidney Disease.

Afshinnia F, Rajendiran TM, Wernisch S, Soni T, Jadoon A, Karnovsky A, Michailidis G, Pennathur S.

Semin Nephrol. 2018 Mar;38(2):127-141. doi: 10.1016/j.semnephrol.2018.01.004. Review.

17.

Inhibitory activity of propolis against Listeria monocytogenes in milk stored under refrigeration.

Thamnopoulos II, Michailidis GF, Fletouris DJ, Badeka A, Kontominas MG, Angelidis AS.

Food Microbiol. 2018 Aug;73:168-176. doi: 10.1016/j.fm.2018.01.021. Epub 2018 Feb 3.

PMID:
29526202
18.

Shared and distinct lipid-lipid interactions in plasma and affected tissues in a diabetic mouse model.

Sas KM, Lin J, Rajendiran TM, Soni T, Nair V, Hinder LM, Jagadish HV, Gardner TW, Abcouwer SF, Brosius FC 3rd, Feldman EL, Kretzler M, Michailidis G, Pennathur S.

J Lipid Res. 2018 Feb;59(2):173-183. doi: 10.1194/jlr.M077222. Epub 2017 Dec 13.

19.

Influence of the neural microenvironment on prostate cancer.

Coarfa C, Florentin D, Putluri N, Ding Y, Au J, He D, Ragheb A, Frolov A, Michailidis G, Lee M, Kadmon D, Miles B, Smith C, Ittmann M, Rowley D, Sreekumar A, Creighton CJ, Ayala G.

Prostate. 2018 Feb;78(2):128-139. doi: 10.1002/pros.23454. Epub 2017 Nov 13.

20.

Impaired β-Oxidation and Altered Complex Lipid Fatty Acid Partitioning with Advancing CKD.

Afshinnia F, Rajendiran TM, Soni T, Byun J, Wernisch S, Sas KM, Hawkins J, Bellovich K, Gipson D, Michailidis G, Pennathur S; Michigan Kidney Translational Core CPROBE Investigator Group.

J Am Soc Nephrol. 2018 Jan;29(1):295-306. doi: 10.1681/ASN.2017030350. Epub 2017 Oct 11.

21.

Tobacco-Specific Carcinogens Induce Hypermethylation, DNA Adducts, and DNA Damage in Bladder Cancer.

Jin F, Thaiparambil J, Donepudi SR, Vantaku V, Piyarathna DWB, Maity S, Krishnapuram R, Putluri V, Gu F, Purwaha P, Bhowmik SK, Ambati CR, von Rundstedt FC, Roghmann F, Berg S, Noldus J, Rajapakshe K, Gödde D, Roth S, Störkel S, Degener S, Michailidis G, Kaipparettu BA, Karanam B, Terris MK, Kavuri SM, Lerner SP, Kheradmand F, Coarfa C, Sreekumar A, Lotan Y, El-Zein R, Putluri N.

Cancer Prev Res (Phila). 2017 Oct;10(10):588-597. doi: 10.1158/1940-6207.CAPR-17-0198. Epub 2017 Aug 29.

22.

Change point estimation in high dimensional Markov random-field models.

Roy S, Atchadé Y, Michailidis G.

J R Stat Soc Series B Stat Methodol. 2017 Sep;79(4):1187-1206. doi: 10.1111/rssb.12205. Epub 2016 Sep 26.

23.

Distinct Lipidomic Landscapes Associated with Clinical Stages of Urothelial Cancer of the Bladder.

Piyarathna DWB, Rajendiran TM, Putluri V, Vantaku V, Soni T, von Rundstedt FC, Donepudi SR, Jin F, Maity S, Ambati CR, Dong J, Gödde D, Roth S, Störkel S, Degener S, Michailidis G, Lerner SP, Pennathur S, Lotan Y, Coarfa C, Sreekumar A, Putluri N.

Eur Urol Focus. 2018 Dec;4(6):907-915. doi: 10.1016/j.euf.2017.04.005. Epub 2017 Apr 20. Erratum in: Eur Urol Focus. 2019 Aug 29;:.

24.

Lipidomic Signature of Progression of Chronic Kidney Disease in the Chronic Renal Insufficiency Cohort.

Afshinnia F, Rajendiran TM, Karnovsky A, Soni T, Wang X, Xie D, Yang W, Shafi T, Weir MR, He J, Brecklin CS, Rhee EP, Schelling JR, Ojo A, Feldman H, Michailidis G, Pennathur S.

Kidney Int Rep. 2016 Nov;1(4):256-268. doi: 10.1016/j.ekir.2016.08.007. Epub 2016 Aug 18. Erratum in: Kidney Int Rep. 2017 Sep 18;2(6):1265.

25.

Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data.

Basu S, Duren W, Evans CR, Burant CF, Michailidis G, Karnovsky A.

Bioinformatics. 2017 May 15;33(10):1545-1553. doi: 10.1093/bioinformatics/btx012.

26.

Cytokine activation during embryonic development and in hen ovary and vagina during reproductive age and Salmonella infection.

Anastasiadou M, Michailidis G.

Res Vet Sci. 2016 Dec;109:86-93. doi: 10.1016/j.rvsc.2016.09.016. Epub 2016 Sep 28.

PMID:
27892879
27.

Tissue-specific metabolic reprogramming drives nutrient flux in diabetic complications.

Sas KM, Kayampilly P, Byun J, Nair V, Hinder LM, Hur J, Zhang H, Lin C, Qi NR, Michailidis G, Groop PH, Nelson RG, Darshi M, Sharma K, Schelling JR, Sedor JR, Pop-Busui R, Weinberg JM, Soleimanpour SA, Abcouwer SF, Gardner TW, Burant CF, Feldman EL, Kretzler M, Brosius FC 3rd, Pennathur S.

JCI Insight. 2016 Sep 22;1(15):e86976. doi: 10.1172/jci.insight.86976.

28.

Network-based pathway enrichment analysis with incomplete network information.

Ma J, Shojaie A, Michailidis G.

Bioinformatics. 2016 Oct 15;32(20):3165-3174. Epub 2016 Jun 29.

29.

Transcriptional changes of cytokines in rooster testis and epididymis during sexual maturation stages and Salmonella infection.

Anastasiadou M, Michailidis G.

Anim Reprod Sci. 2016 Aug;171:41-8. doi: 10.1016/j.anireprosci.2016.05.012. Epub 2016 May 26.

PMID:
27289435
30.

Inhibition of the hexosamine biosynthetic pathway promotes castration-resistant prostate cancer.

Kaushik AK, Shojaie A, Panzitt K, Sonavane R, Venghatakrishnan H, Manikkam M, Zaslavsky A, Putluri V, Vasu VT, Zhang Y, Khan AS, Lloyd S, Szafran AT, Dasgupta S, Bader DA, Stossi F, Li H, Samanta S, Cao X, Tsouko E, Huang S, Frigo DE, Chan L, Edwards DP, Kaipparettu BA, Mitsiades N, Weigel NL, Mancini M, McGuire SE, Mehra R, Ittmann MM, Chinnaiyan AM, Putluri N, Palapattu GS, Michailidis G, Sreekumar A.

Nat Commun. 2016 May 19;7:11612. doi: 10.1038/ncomms11612.

31.

ESTIMATING HETEROGENEOUS GRAPHICAL MODELS FOR DISCRETE DATA WITH AN APPLICATION TO ROLL CALL VOTING.

Guo J, Cheng J, Levina E, Michailidis G, Zhu J.

Ann Appl Stat. 2015 Jun;9(2):821-848.

32.

Integrative Pathway Analysis of Metabolic Signature in Bladder Cancer: A Linkage to The Cancer Genome Atlas Project and Prediction of Survival.

von Rundstedt FC, Rajapakshe K, Ma J, Arnold JM, Gohlke J, Putluri V, Krishnapuram R, Piyarathna DB, Lotan Y, Gödde D, Roth S, Störkel S, Levitt JM, Michailidis G, Sreekumar A, Lerner SP, Coarfa C, Putluri N.

J Urol. 2016 Jun;195(6):1911-9. doi: 10.1016/j.juro.2016.01.039. Epub 2016 Jan 21.

33.

A non-negative matrix factorization method for detecting modules in heterogeneous omics multi-modal data.

Yang Z, Michailidis G.

Bioinformatics. 2016 Jan 1;32(1):1-8. doi: 10.1093/bioinformatics/btv544. Epub 2015 Sep 15.

34.

EMT-induced metabolite signature identifies poor clinical outcome.

Bhowmik SK, Ramirez-Peña E, Arnold JM, Putluri V, Sphyris N, Michailidis G, Putluri N, Ambs S, Sreekumar A, Mani SA.

Oncotarget. 2015 Dec 15;6(40):42651-60. doi: 10.18632/oncotarget.4765.

35.

Graphical Models for Ordinal Data.

Guo J, Levina E, Michailidis G, Zhu J.

J Comput Graph Stat. 2015 Mar 31;24(1):183-204.

36.

CAPER is vital for energy and redox homeostasis by integrating glucose-induced mitochondrial functions via ERR-α-Gabpa and stress-induced adaptive responses via NF-κB-cMYC.

Kang YK, Putluri N, Maity S, Tsimelzon A, Ilkayeva O, Mo Q, Lonard D, Michailidis G, Sreekumar A, Newgard CB, Wang M, Tsai SY, Tsai MJ, O'Malley BW.

PLoS Genet. 2015 Apr 1;11(4):e1005116. doi: 10.1371/journal.pgen.1005116. eCollection 2015 Apr. Erratum in: PLoS Genet. 2015 Jun;11(6):e1005316.

37.

Study of Toll-like receptor and B-defensins genes expression pattern in porcine reproductive organs.

Marantidis A, Laliotis GP, Michailidis G, Avdi M.

Anim Biotechnol. 2015;26(3):188-93. doi: 10.1080/10495398.2014.902849.

PMID:
25800128
38.

Metabolomics and diabetes: analytical and computational approaches.

Sas KM, Karnovsky A, Michailidis G, Pennathur S.

Diabetes. 2015 Mar;64(3):718-32. doi: 10.2337/db14-0509. Review.

39.

Critical limitations of consensus clustering in class discovery.

Șenbabaoğlu Y, Michailidis G, Li JZ.

Sci Rep. 2014 Aug 27;4:6207. doi: 10.1038/srep06207.

40.

Effects of maternal undernutrition during late gestation and/or lactation on colostrum synthesis and immunological parameters in the offspring.

Chadio S, Katsafadou A, Kotsampasi B, Michailidis G, Mountzouris KC, Kalogiannis D, Christodoulou V.

Reprod Fertil Dev. 2016 Mar;28(3):384-93. doi: 10.1071/RD14147.

PMID:
25082148
41.

Pathway-centric integrative analysis identifies RRM2 as a prognostic marker in breast cancer associated with poor survival and tamoxifen resistance.

Putluri N, Maity S, Kommagani R, Creighton CJ, Putluri V, Chen F, Nanda S, Bhowmik SK, Terunuma A, Dorsey T, Nardone A, Fu X, Shaw C, Sarkar TR, Schiff R, Lydon JP, O'Malley BW, Ambs S, Das GM, Michailidis G, Sreekumar A.

Neoplasia. 2014 May;16(5):390-402. doi: 10.1016/j.neo.2014.05.007. Erratum in: Neoplasia. 2014 Aug;16(8):678. Kommangani, Ramakrishna [corrected to Kommagani, Ramakrishna].

42.

Activation of innate immune system in response to lipopolysaccharide in chicken Sertoli cells.

Michailidis G, Anastasiadou M, Guibert E, Froment P.

Reproduction. 2014 Sep;148(3):259-70. doi: 10.1530/REP-14-0064. Epub 2014 Jun 11.

PMID:
24920664
43.

A multi-farm assessment of Greek black pig genetic diversity using microsatellite molecular markers.

Michailidou S, Kalivas A, Ganopoulos I, Stea E, Michailidis G, Tsaftaris A, Argiriou A.

Genet Mol Res. 2014 Apr 14;13(2):2752-65. doi: 10.4238/2014.April.14.4.

44.

Network reconstruction using nonparametric additive ODE models.

Henderson J, Michailidis G.

PLoS One. 2014 Apr 14;9(4):e94003. doi: 10.1371/journal.pone.0094003. eCollection 2014.

45.

Inferring regulatory networks by combining perturbation screens and steady state gene expression profiles.

Shojaie A, Jauhiainen A, Kallitsis M, Michailidis G.

PLoS One. 2014 Feb 28;9(2):e82393. doi: 10.1371/journal.pone.0082393. eCollection 2014.

46.

SRC-2 is an essential coactivator for orchestrating metabolism and circadian rhythm.

Stashi E, Lanz RB, Mao J, Michailidis G, Zhu B, Kettner NM, Putluri N, Reineke EL, Reineke LC, Dasgupta S, Dean A, Stevenson CR, Sivasubramanian N, Sreekumar A, Demayo F, York B, Fu L, O'Malley BW.

Cell Rep. 2014 Feb 27;6(4):633-45. doi: 10.1016/j.celrep.2014.01.027. Epub 2014 Feb 13.

47.

Effects of sexual maturation and Salmonella infection on the expression of avian β-defensin genes in the chicken testis.

Anastasiadou M, Theodoridis A, Michailidis G.

Vet Res Commun. 2014 Jun;38(2):107-13. doi: 10.1007/s11259-014-9591-4. Epub 2014 Jan 28.

PMID:
24469393
48.

Metabolomic profiling identifies biochemical pathways associated with castration-resistant prostate cancer.

Kaushik AK, Vareed SK, Basu S, Putluri V, Putluri N, Panzitt K, Brennan CA, Chinnaiyan AM, Vergara IA, Erho N, Weigel NL, Mitsiades N, Shojaie A, Palapattu G, Michailidis G, Sreekumar A.

J Proteome Res. 2014 Feb 7;13(2):1088-100. doi: 10.1021/pr401106h. Epub 2013 Dec 31.

49.

Structural and functional discovery in dynamic networks with non-negative matrix factorization.

Mankad S, Michailidis G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Oct;88(4):042812. Epub 2013 Oct 17.

PMID:
24229230
50.

Autoregressive models for gene regulatory network inference: sparsity, stability and causality issues.

Michailidis G, d'Alché-Buc F.

Math Biosci. 2013 Dec;246(2):326-34. doi: 10.1016/j.mbs.2013.10.003. Epub 2013 Oct 28. Review.

PMID:
24176667

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