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The phage gene wmk is a candidate for male killing by a bacterial endosymbiont.

Perlmutter JI, Bordenstein SR, Unckless RL, LePage DP, Metcalf JA, Hill T, Martinez J, Jiggins FM, Bordenstein SR.

PLoS Pathog. 2019 Sep 10;15(9):e1007936. doi: 10.1371/journal.ppat.1007936. eCollection 2019 Sep.


The benefit of immediate compared with deferred antiretroviral therapy on CD4+ cell count recovery in early HIV infection.

Sharma S, Schlusser KE, de la Torre P, Tambussi G, Draenert R, Pinto AN, Metcalf JA, Neaton JD, Laeyendecker O; INSIGHT START Study Group.

AIDS. 2019 Jul 1;33(8):1335-1344. doi: 10.1097/QAD.0000000000002219.


Postruminal infusion of calcium gluconate increases milk fat production and alters fecal volatile fatty acid profile in lactating dairy cows.

Doelman J, McKnight LL, Carson M, Nichols K, Waterman DF, Metcalf JA.

J Dairy Sci. 2019 Feb;102(2):1274-1280. doi: 10.3168/jds.2018-15148. Epub 2018 Dec 24.


Comparison of Self-report to Biomarkers of Recent HIV Infection: Findings from the START Trial.

Schlusser KE, Sharma S, de la Torre P, Tambussi G, Draenert R, Pinto AN, Metcalf JA, German D, Neaton JD, Laeyendecker O; INSIGHT START Study Group.

AIDS Behav. 2018 Jul;22(7):2277-2283. doi: 10.1007/s10461-018-2048-y.


Systemic Inflammation, Coagulation, and Clinical Risk in the START Trial.

Baker JV, Sharma S, Grund B, Rupert A, Metcalf JA, Schechter M, Munderi P, Aho I, Emery S, Babiker A, Phillips A, Lundgren JD, Neaton JD, Lane HC; INSIGHT START (Strategic Timing of AntiRetroviral Treatment) Study Group.

Open Forum Infect Dis. 2017 Nov 28;4(4):ofx262. doi: 10.1093/ofid/ofx262. eCollection 2017 Fall.


Abrupt weaning reduces postweaning growth and is associated with alterations in gastrointestinal markers of development in dairy calves fed an elevated plane of nutrition during the preweaning period.

Steele MA, Doelman JH, Leal LN, Soberon F, Carson M, Metcalf JA.

J Dairy Sci. 2017 Jul;100(7):5390-5399. doi: 10.3168/jds.2016-12310. Epub 2017 May 17.


Immune plasma for the treatment of severe influenza: an open-label, multicentre, phase 2 randomised study.

Beigel JH, Tebas P, Elie-Turenne MC, Bajwa E, Bell TE, Cairns CB, Shoham S, Deville JG, Feucht E, Feinberg J, Luke T, Raviprakash K, Danko J, O'Neil D, Metcalf JA, King K, Burgess TH, Aga E, Lane HC, Hughes MD, Davey RT; IRC002 Study Team.

Lancet Respir Med. 2017 Jun;5(6):500-511. doi: 10.1016/S2213-2600(17)30174-1. Epub 2017 May 15. Erratum in: Lancet Respir Med. 2017 Jul;5(7):e26.


Exogenous essential amino acids stimulate an adaptive unfolded protein response in the mammary glands of lactating cows.

Nichols K, Doelman J, Kim JJM, Carson M, Metcalf JA, Cant JP.

J Dairy Sci. 2017 Jul;100(7):5909-5921. doi: 10.3168/jds.2016-12387. Epub 2017 May 3.


Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility.

LePage DP, Metcalf JA, Bordenstein SR, On J, Perlmutter JI, Shropshire JD, Layton EM, Funkhouser-Jones LJ, Beckmann JF, Bordenstein SR.

Nature. 2017 Mar 9;543(7644):243-247. doi: 10.1038/nature21391. Epub 2017 Feb 27.


Interleukin-15 (IL-15) Strongly Correlates with Increasing HIV-1 Viremia and Markers of Inflammation.

Swaminathan S, Qiu J, Rupert AW, Hu Z, Higgins J, Dewar RL, Stevens R, Rehm CA, Metcalf JA, Sherman BT, Baseler MW, Lane HC, Imamichi T.

PLoS One. 2016 Nov 23;11(11):e0167091. doi: 10.1371/journal.pone.0167091. eCollection 2016.


The effects of storage temperature on PBMC gene expression.

Yang J, Diaz N, Adelsberger J, Zhou X, Stevens R, Rupert A, Metcalf JA, Baseler M, Barbon C, Imamichi T, Lempicki R, Cosentino LM.

BMC Immunol. 2016 Mar 15;17:6. doi: 10.1186/s12865-016-0144-1.


Glucose supplementation stimulates peripheral branched-chain amino acid catabolism in lactating dairy cows during essential amino acid infusions.

Nichols K, Kim JJM, Carson M, Metcalf JA, Cant JP, Doelman J.

J Dairy Sci. 2016 Feb;99(2):1145-1160. doi: 10.3168/jds.2015-9912. Epub 2015 Nov 28.


Branched-chain amino acid and lysine deficiencies exert different effects on mammary translational regulation.

Doelman J, Kim JJ, Carson M, Metcalf JA, Cant JP.

J Dairy Sci. 2015 Nov;98(11):7846-55. doi: 10.3168/jds.2015-9819. Epub 2015 Sep 3.


The influence of age and weaning on permeability of the gastrointestinal tract in Holstein bull calves.

Wood KM, Palmer SI, Steele MA, Metcalf JA, Penner GB.

J Dairy Sci. 2015 Oct;98(10):7226-37. doi: 10.3168/jds.2015-9393. Epub 2015 Aug 13.


Amblyomma americanum as a Bridging Vector for Human Infection with Francisella tularensis.

Mani RJ, Metcalf JA, Clinkenbeard KD.

PLoS One. 2015 Jun 29;10(6):e0130513. doi: 10.1371/journal.pone.0130513. eCollection 2015.


Essential amino acid infusions stimulate mammary expression of eukaryotic initiation factor 2Bε but milk protein yield is not increased during an imbalance.

Doelman J, Curtis RV, Carson M, Kim JJ, Metcalf JA, Cant JP.

J Dairy Sci. 2015 Jul;98(7):4499-508. doi: 10.3168/jds.2014-9051. Epub 2015 Apr 23.


Antibacterial gene transfer across the tree of life.

Metcalf JA, Funkhouser-Jones LJ, Brileya K, Reysenbach AL, Bordenstein SR.

Elife. 2014 Nov 25;3. doi: 10.7554/eLife.04266.


Technical note: Three-dimensional imaging of rumen tissue for morphometric analysis using micro-computed tomography.

Steele MA, Garcia F, Lowerison M, Gordon K, Metcalf JA, Hurtig M.

J Dairy Sci. 2014 Dec;97(12):7691-6. doi: 10.3168/jds.2014-8374. Epub 2014 Sep 26.


Facilitating Lewin's change model with collaborative evaluation in promoting evidence based practices of health professionals.

Manchester J, Gray-Miceli DL, Metcalf JA, Paolini CA, Napier AH, Coogle CL, Owens MG.

Eval Program Plann. 2014 Dec;47:82-90. doi: 10.1016/j.evalprogplan.2014.08.007. Epub 2014 Aug 23.


Recent genome reduction of Wolbachia in Drosophila recens targets phage WO and narrows candidates for reproductive parasitism.

Metcalf JA, Jo M, Bordenstein SR, Jaenike J, Bordenstein SR.

PeerJ. 2014 Aug 14;2:e529. doi: 10.7717/peerj.529. eCollection 2014.


Plasma interleukin-27 (IL-27) levels are not modulated in patients with chronic HIV-1 infection.

Swaminathan S, Hu Z, Rupert AW, Higgins JM, Dewar RL, Stevens R, Chen Q, Rehm CA, Metcalf JA, Baseler MW, Lane HC, Imamichi T.

PLoS One. 2014 Jun 4;9(6):e98989. doi: 10.1371/journal.pone.0098989. eCollection 2014.


HIV populations are large and accumulate high genetic diversity in a nonlinear fashion.

Maldarelli F, Kearney M, Palmer S, Stephens R, Mican J, Polis MA, Davey RT, Kovacs J, Shao W, Rock-Kress D, Metcalf JA, Rehm C, Greer SE, Lucey DL, Danley K, Alter H, Mellors JW, Coffin JM.

J Virol. 2013 Sep;87(18):10313-23. doi: 10.1128/JVI.01225-12. Epub 2013 May 15.


The association between serum biomarkers and disease outcome in influenza A(H1N1)pdm09 virus infection: results of two international observational cohort studies.

Davey RT Jr, Lynfield R, Dwyer DE, Losso MH, Cozzi-Lepri A, Wentworth D, Lane HC, Dewar R, Rupert A, Metcalf JA, Pett SL, Uyeki TM, Bruguera JM, Angus B, Cummins N, Lundgren J, Neaton JD; INSIGHT FLU 002 & 003 Study Groups.

PLoS One. 2013;8(2):e57121. doi: 10.1371/journal.pone.0057121. Epub 2013 Feb 27.


Comparative genomic analysis of East Asian and non-Asian Helicobacter pylori strains identifies rapidly evolving genes.

Duncan SS, Valk PL, McClain MS, Shaffer CL, Metcalf JA, Bordenstein SR, Cover TL.

PLoS One. 2013;8(1):e55120. doi: 10.1371/journal.pone.0055120. Epub 2013 Jan 31.


The complexity of virus systems: the case of endosymbionts.

Metcalf JA, Bordenstein SR.

Curr Opin Microbiol. 2012 Aug;15(4):546-52. doi: 10.1016/j.mib.2012.04.010. Epub 2012 May 19.


Pre-ART levels of inflammation and coagulation markers are strong predictors of death in a South African cohort with advanced HIV disease.

Ledwaba L, Tavel JA, Khabo P, Maja P, Qin J, Sangweni P, Liu X, Follmann D, Metcalf JA, Orsega S, Baseler B, Neaton JD, Lane HC; Project Phidisa Biomarkers Team.

PLoS One. 2012;7(3):e24243. doi: 10.1371/journal.pone.0024243. Epub 2012 Mar 20.


Neonatal gene therapy with a gamma retroviral vector in mucopolysaccharidosis VI cats.

Ponder KP, O'Malley TM, Wang P, O'Donnell PA, Traas AM, Knox VW, Aguirre GA, Ellinwood NM, Metcalf JA, Wang B, Parkinson-Lawrence EJ, Sleeper MM, Brooks DA, Hopwood JJ, Haskins ME.

Mol Ther. 2012 May;20(5):898-907. doi: 10.1038/mt.2012.9. Epub 2012 Mar 6.


HIV-1 infected monozygotic twins: a tale of two outcomes.

Tazi L, Imamichi H, Hirschfeld S, Metcalf JA, Orsega S, Pérez-Losada M, Posada D, Lane HC, Crandall KA.

BMC Evol Biol. 2011 Mar 8;11:62. doi: 10.1186/1471-2148-11-62.


Clinical evaluation of the potential utility of computational modeling as an HIV treatment selection tool by physicians with considerable HIV experience.

Larder BA, Revell A, Mican JM, Agan BK, Harris M, Torti C, Izzo I, Metcalf JA, Rivera-Goba M, Marconi VC, Wang D, Coe D, Gazzard B, Montaner J, Lane HC.

AIDS Patient Care STDS. 2011 Jan;25(1):29-36. doi: 10.1089/apc.2010.0254.


Tuberculosis risk factors and mortality for HIV-infected persons receiving antiretroviral therapy in South Africa.

Komati S, Shaw PA, Stubbs N, Mathibedi MJ, Malan L, Sangweni P, Metcalf JA, Masur H, Hassim S.

AIDS. 2010 Jul 31;24(12):1849-55. doi: 10.1097/QAD.0b013e32833a2507.


Evaluation of the Performance of the Sysmex XT-2000i Hematology Analyzer With Whole Bloods Stored at Room Temperature.

Hill VL, Simpson VZ, Higgins JM, Hu Z, Stevens RA, Metcalf JA, Baseler M.

Lab Med. 2009 Dec;40(12):709-718. No abstract available.


Interferon-alpha produces significant decreases in HIV load.

Tavel JA, Huang CY, Shen J, Metcalf JA, Dewar R, Shah A, Vasudevachari MB, Follmann DA, Herpin B, Davey RT, Polis MA, Kovacs J, Masur H, Lane HC.

J Interferon Cytokine Res. 2010 Jul;30(7):461-4. doi: 10.1089/jir.2009.0090.


Detection of a substantial rate of multidrug-resistant tuberculosis in an HIV-infected population in South Africa by active monitoring of sputum samples.

Hassim S, Shaw PA, Sangweni P, Malan L, Ntshani E, Mathibedi MJ, Stubbs N, Metcalf JA, Eckes R, Masur H, Komati S.

Clin Infect Dis. 2010 Apr 1;50(7):1053-9. doi: 10.1086/651119.


Short-course raltegravir intensification does not reduce persistent low-level viremia in patients with HIV-1 suppression during receipt of combination antiretroviral therapy.

McMahon D, Jones J, Wiegand A, Gange SJ, Kearney M, Palmer S, McNulty S, Metcalf JA, Acosta E, Rehm C, Coffin JM, Mellors JW, Maldarelli F.

Clin Infect Dis. 2010 Mar 15;50(6):912-9. doi: 10.1086/650749.


Upregulation of elastase activity in aorta in mucopolysaccharidosis I and VII dogs may be due to increased cytokine expression.

Metcalf JA, Linders B, Wu S, Bigg P, O'Donnell P, Sleeper MM, Whyte MP, Haskins M, Ponder KP.

Mol Genet Metab. 2010 Apr;99(4):396-407. doi: 10.1016/j.ymgme.2009.12.003. Epub 2009 Dec 11.


A self-inactivating gamma-retroviral vector reduces manifestations of mucopolysaccharidosis I in mice.

Metcalf JA, Ma X, Linders B, Wu S, Schambach A, Ohlemiller KK, Kovacs A, Bigg M, He L, Tollefsen DM, Ponder KP.

Mol Ther. 2010 Feb;18(2):334-42. doi: 10.1038/mt.2009.236. Epub 2009 Oct 20.


Defective human immunodeficiency virus-specific CD8+ T-cell polyfunctionality, proliferation, and cytotoxicity are not restored by antiretroviral therapy.

Migueles SA, Weeks KA, Nou E, Berkley AM, Rood JE, Osborne CM, Hallahan CW, Cogliano-Shutta NA, Metcalf JA, McLaughlin M, Kwan R, Mican JM, Davey RT Jr, Connors M.

J Virol. 2009 Nov;83(22):11876-89. doi: 10.1128/JVI.01153-09. Epub 2009 Sep 2.


Evaluation of the pathogenesis of decreasing CD4(+) T cell counts in human immunodeficiency virus type 1-infected patients receiving successfully suppressive antiretroviral therapy.

Nies-Kraske E, Schacker TW, Condoluci D, Orenstein J, Brenchley J, Fox C, Daucher M, Dewar R, Urban E, Hill B, Guenaga J, Hoover S, Maldarelli F, Hallahan CW, Horn J, Kottilil S, Chun TW, Folino M, Palmer S, Wiegand A, O'Shea MA, Metcalf JA, Douek DC, Coffin J, Haase A, Fauci AS, Dybul M.

J Infect Dis. 2009 Jun 1;199(11):1648-56. doi: 10.1086/598980.


Mechanism of shortened bones in mucopolysaccharidosis VII.

Metcalf JA, Zhang Y, Hilton MJ, Long F, Ponder KP.

Mol Genet Metab. 2009 Jul;97(3):202-11. doi: 10.1016/j.ymgme.2009.03.005. Epub 2009 Mar 25.


Comparisons of CD8+ T cells specific for human immunodeficiency virus, hepatitis C virus, and cytomegalovirus reveal differences in frequency, immunodominance, phenotype, and interleukin-2 responsiveness.

Jagannathan P, Osborne CM, Royce C, Manion MM, Tilton JC, Li L, Fischer S, Hallahan CW, Metcalf JA, McLaughlin M, Pipeling M, McDyer JF, Manley TJ, Meier JL, Altman JD, Hertel L, Davey RT Jr, Connors M, Migueles SA.

J Virol. 2009 Mar;83(6):2728-42. doi: 10.1128/JVI.02128-08. Epub 2009 Jan 7.


George Orwell's Animal Farm: a case study in leadership/management for undergraduate nursing students.

Metcalf JA.

Nurse Educ Pract. 2005 Jul;5(4):252-4. doi: 10.1016/j.nepr.2005.03.005.


The efficiency of conversion of metabolisable protein into milk true protein over a range of metabolisable protein intakes.

Metcalf JA, Mansbridge RJ, Blake JS, Oldham JD, Newbold JR.

Animal. 2008 Aug;2(8):1193-202. doi: 10.1017/S1751731108002140.


Idiopathic CD4+ lymphocytopenia: natural history and prognostic factors.

Zonios DI, Falloon J, Bennett JE, Shaw PA, Chaitt D, Baseler MW, Adelsberger JW, Metcalf JA, Polis MA, Kovacs SB, Kovacs JA, Davey RT, Lane HC, Masur H, Sereti I.

Blood. 2008 Jul 15;112(2):287-94. doi: 10.1182/blood-2007-12-127878. Epub 2008 May 2. Erratum in: Blood. 2014 Jul 17;124(3):463. Kovacs, Stephen J [corrected to Kovacs, Stephen B].


Effects of delays in peripheral blood processing, including cryopreservation, on detection of CD31 expression on naive CD4 T cells.

Higgins J, Metcalf JA, Stevens RA, Baseler M, Proschan M, Lane HC, Sereti I.

Clin Vaccine Immunol. 2008 Jul;15(7):1141-3. doi: 10.1128/CVI.00430-07. Epub 2008 Apr 30.


Human immunodeficiency virus viremia induces plasmacytoid dendritic cell activation in vivo and diminished alpha interferon production in vitro.

Tilton JC, Manion MM, Luskin MR, Johnson AJ, Patamawenu AA, Hallahan CW, Cogliano-Shutta NA, Mican JM, Davey RT Jr, Kottilil S, Lifson JD, Metcalf JA, Lempicki RA, Connors M.

J Virol. 2008 Apr;82(8):3997-4006. doi: 10.1128/JVI.01545-07. Epub 2008 Feb 6.


Virological outcome after structured interruption of antiretroviral therapy for human immunodeficiency virus infection is associated with the functional profile of virus-specific CD8+ T cells.

Daucher M, Price DA, Brenchley JM, Lamoreaux L, Metcalf JA, Rehm C, Nies-Kraske E, Urban E, Yoder C, Rock D, Gumkowski J, Betts MR, Dybul MR, Douek DC.

J Virol. 2008 Apr;82(8):4102-14. doi: 10.1128/JVI.02212-07. Epub 2008 Jan 30.


Evaluation of a single-platform technology for lymphocyte immunophenotyping.

Higgins J, Hill V, Lau K, Simpson V, Roayaei J, Klabansky R, Stevens RA, Metcalf JA, Baseler M.

Clin Vaccine Immunol. 2007 Oct;14(10):1342-8. Epub 2007 Aug 29.


CD4+ T cell responses to interleukin-2 administration in HIV-infected patients are directly related to the baseline level of immune activation.

Sereti I, Sklar P, Ramchandani MS, Read SW, Aggarwal V, Imamichi H, Natarajan V, Metcalf JA, Kovacs JA, Tavel J, Davey RT, Dersimonian R, Lane HC.

J Infect Dis. 2007 Sep 1;196(5):677-83. Epub 2007 Jul 16.


Detection of KIR3DS1 on the cell surface of peripheral blood NK cells facilitates identification of a novel null allele and assessment of KIR3DS1 expression during HIV-1 infection.

Pascal V, Yamada E, Martin MP, Alter G, Altfeld M, Metcalf JA, Baseler MW, Adelsberger JW, Carrington M, Anderson SK, McVicar DW.

J Immunol. 2007 Aug 1;179(3):1625-33.


Comparison of the abbott 7000 and bayer 340 systems for measurement of hepatitis C virus load.

Highbarger HC, Hu Z, Kottilil S, Metcalf JA, Polis MA, Vasudevachari MB, Lane HC, Dewar RL.

J Clin Microbiol. 2007 Sep;45(9):2808-12. Epub 2007 Jun 27.

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