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Filtering procedures for untargeted LC-MS metabolomics data.

Schiffman C, Petrick L, Perttula K, Yano Y, Carlsson H, Whitehead T, Metayer C, Hayes J, Rappaport S, Dudoit S.

BMC Bioinformatics. 2019 Jun 14;20(1):334. doi: 10.1186/s12859-019-2871-9.


Predisposing germline mutations in high hyperdiploid acute lymphoblastic leukemia in children.

de Smith AJ, Lavoie G, Walsh KM, Aujla S, Evans E, Hansen HM, Smirnov I, Kang AY, Zenker M, Ceremsak JJ, Stieglitz E, Muskens IS, Roberts W, McKean-Cowdin R, Metayer C, Roux PP, Wiemels JL.

Genes Chromosomes Cancer. 2019 May 18. doi: 10.1002/gcc.22765. [Epub ahead of print]


Monitoring neurocognitive functioning in childhood cancer survivors: evaluation of CogState computerized assessment and the Behavior Rating Inventory of Executive Function (BRIEF).

Balsamo LM, Mitchell HR, Ross W, Metayer C, Hardy KK, Kadan-Lottick NS.

BMC Psychol. 2019 May 2;7(1):26. doi: 10.1186/s40359-019-0302-3.


Increased neonatal level of arginase 2 in cases of childhood acute lymphoblastic leukemia implicates immunosuppression in etiology.

Nielsen AB, Zhou M, de Smith AJ, Wang R, McCoy L, Hansen H, Morimoto L, Grønbæk K, Johansen C, Kogan SC, Metayer C, Bracci PM, Ma X, Wiemels JL.

Haematologica. 2019 Mar 28. pii: haematol.2019.216465. doi: 10.3324/haematol.2019.216465. [Epub ahead of print]


Metabolomics of neonatal blood spots reveal distinct phenotypes of pediatric acute lymphoblastic leukemia and potential effects of early-life nutrition.

Petrick LM, Schiffman C, Edmands WMB, Yano Y, Perttula K, Whitehead T, Metayer C, Wheelock CE, Arora M, Grigoryan H, Carlsson H, Dudoit S, Rappaport SM.

Cancer Lett. 2019 Jun 28;452:71-78. doi: 10.1016/j.canlet.2019.03.007. Epub 2019 Mar 20.


Untargeted adductomics of Cys34 modifications to human serum albumin in newborn dried blood spots.

Yano Y, Grigoryan H, Schiffman C, Edmands W, Petrick L, Hall K, Whitehead T, Metayer C, Dudoit S, Rappaport S.

Anal Bioanal Chem. 2019 Apr;411(11):2351-2362. doi: 10.1007/s00216-019-01675-8. Epub 2019 Feb 19.


Parental age and the risk of childhood acute myeloid leukemia: results from the Childhood Leukemia International Consortium.

Panagopoulou P, Skalkidou A, Marcotte E, Erdmann F, Ma X, Heck JE, Auvinen A, Mueller BA, Spector LG, Roman E, Metayer C, Magnani C, Pombo-de-Oliveira MS, Scheurer ME, Mora AM, Dockerty JD, Hansen J, Kang AY, Wang R, Doody DR, Kane E, Schüz J, Christodoulakis C, Ntzani E, Petridou ET; FRECCLE group; NARECHEM-ST group.

Cancer Epidemiol. 2019 Apr;59:158-165. doi: 10.1016/j.canep.2019.01.022. Epub 2019 Feb 15.


Genetic determinants of childhood and adult height associated with osteosarcoma risk.

Zhang C, Morimoto LM, de Smith AJ, Hansen HM, Gonzalez-Maya J, Endicott AA, Smirnov IV, Metayer C, Wei Q, Eward WC, Wiemels JL, Walsh KM.

Cancer. 2018 Sep 15;124(18):3742-3752. doi: 10.1002/cncr.31645. Epub 2018 Oct 12.


To ERV Is Human: A Phenotype-Wide Scan Linking Polymorphic Human Endogenous Retrovirus-K Insertions to Complex Phenotypes.

Wallace AD, Wendt GA, Barcellos LF, de Smith AJ, Walsh KM, Metayer C, Costello JF, Wiemels JL, Francis SS.

Front Genet. 2018 Aug 14;9:298. doi: 10.3389/fgene.2018.00298. eCollection 2018.


Allergies and Childhood Acute Lymphoblastic Leukemia: A Case-Control Study and Meta-analysis.

Wallace AD, Francis SS, Ma X, McKean-Cowdin R, Selvin S, Whitehead TP, Barcellos LF, Kang AY, Morimoto L, Moore TB, Wiemels JL, Metayer C.

Cancer Epidemiol Biomarkers Prev. 2018 Oct;27(10):1142-1150. doi: 10.1158/1055-9965.EPI-17-0584. Epub 2018 Aug 1.


Two HLA Class II Gene Variants Are Independently Associated with Pediatric Osteosarcoma Risk.

Zhang C, Wiemels JL, Hansen HM, Gonzalez-Maya J, Endicott AA, de Smith AJ, Smirnov IV, Witte JS, Morimoto LM, Metayer C, Walsh KM.

Cancer Epidemiol Biomarkers Prev. 2018 Oct;27(10):1151-1158. doi: 10.1158/1055-9965.EPI-18-0306. Epub 2018 Jul 23.


BMI1 enhancer polymorphism underlies chromosome 10p12.31 association with childhood acute lymphoblastic leukemia.

de Smith AJ, Walsh KM, Francis SS, Zhang C, Hansen HM, Smirnov I, Morimoto L, Whitehead TP, Kang A, Shao X, Barcellos LF, McKean-Cowdin R, Zhang L, Fu C, Wang R, Yu H, Hoh J, Dewan AT, Metayer C, Ma X, Wiemels JL.

Int J Cancer. 2018 Dec 1;143(11):2647-2658. doi: 10.1002/ijc.31622. Epub 2018 Oct 3.


Advanced parental age as risk factor for childhood acute lymphoblastic leukemia: results from studies of the Childhood Leukemia International Consortium.

Petridou ET, Georgakis MK, Erdmann F, Ma X, Heck JE, Auvinen A, Mueller BA, Spector LG, Roman E, Metayer C, Magnani C, Pombo-de-Oliveira MS, Ezzat S, Scheurer ME, Mora AM, Dockerty JD, Hansen J, Kang AY, Wang R, Doody DR, Kane E, Rashed WM, Dessypris N, Schüz J, Infante-Rivard C, Skalkidou A.

Eur J Epidemiol. 2018 Oct;33(10):965-976. doi: 10.1007/s10654-018-0402-z. Epub 2018 May 14.


An overview of disparities in childhood cancer: Report on the Inaugural Symposium on Childhood Cancer Health Disparities, Houston, Texas, 2016.

Scheurer ME, Lupo PJ, Schüz J, Spector LG, Wiemels JL, Aplenc R, Gramatges MM, Schiffman JD, Pombo-de-Oliveira MS, Yang JJ, Heck JE, Metayer C, Orjuela-Grimm MA, Bona K, Aristizabal P, Austin MT, Rabin KR, Russell HV, Poplack DG.

Pediatr Hematol Oncol. 2018 Mar;35(2):95-110. doi: 10.1080/08880018.2018.1464088. Epub 2018 May 8.


An untargeted metabolomics method for archived newborn dried blood spots in epidemiologic studies.

Petrick L, Edmands W, Schiffman C, Grigoryan H, Perttula K, Yano Y, Dudoit S, Whitehead T, Metayer C, Rappaport S.

Metabolomics. 2017 Mar;13(3). pii: 27. doi: 10.1007/s11306-016-1153-z. Epub 2017 Feb 3.


Living on a farm, contact with farm animals and pets, and childhood acute lymphoblastic leukemia: pooled and meta-analyses from the Childhood Leukemia International Consortium.

Orsi L, Magnani C, Petridou ET, Dockerty JD, Metayer C, Milne E, Bailey HD, Dessypris N, Kang AY, Wesseling C, Infante-Rivard C, Wünsch-Filho V, Mora AM, Spector LG, Clavel J.

Cancer Med. 2018 Jun;7(6):2665-2681. doi: 10.1002/cam4.1466. Epub 2018 Apr 16.


Maternal residential pesticide use and risk of childhood leukemia in Costa Rica.

Hyland C, Gunier RB, Metayer C, Bates MN, Wesseling C, Mora AM.

Int J Cancer. 2018 Sep 15;143(6):1295-1304. doi: 10.1002/ijc.31522. Epub 2018 Apr 26.


Maternal consumption of coffee and tea during pregnancy and risk of childhood ALL: a pooled analysis from the childhood Leukemia International Consortium.

Milne E, Greenop KR, Petridou E, Bailey HD, Orsi L, Kang AY, Baka M, Bonaventure A, Kourti M, Metayer C, Clavel J.

Cancer Causes Control. 2018 Jun;29(6):539-550. doi: 10.1007/s10552-018-1024-1. Epub 2018 Mar 29.


Neonatal Hormone Concentrations and Risk of Testicular Germ Cell Tumors (TGCT).

Morimoto LM, Zava D, McGlynn KA, Stanczyk FZ, Kang AY, Ma X, Wiemels JL, Metayer C.

Cancer Epidemiol Biomarkers Prev. 2018 Apr;27(4):488-495. doi: 10.1158/1055-9965.EPI-17-0879. Epub 2018 Feb 23.


GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.

Wiemels JL, Walsh KM, de Smith AJ, Metayer C, Gonseth S, Hansen HM, Francis SS, Ojha J, Smirnov I, Barcellos L, Xiao X, Morimoto L, McKean-Cowdin R, Wang R, Yu H, Hoh J, DeWan AT, Ma X.

Nat Commun. 2018 Jan 18;9(1):286. doi: 10.1038/s41467-017-02596-9.


A germ-line deletion of APOBEC3B does not contribute to subtype-specific childhood acute lymphoblastic leukemia etiology.

Wallace AD, Francis SS, Shao X, de Smith AJ, Walsh KM, Mckean-Cowdin R, Ma X, Dahl G, Barcellos LF, Wiemels JL, Metayer C.

Haematologica. 2018 Jan;103(1):e29-e31. doi: 10.3324/haematol.2017.179317. Epub 2017 Oct 12. No abstract available.


Parental Age and Risk of Pediatric Cancer in the Offspring: A Population-Based Record-Linkage Study in California.

Wang R, Metayer C, Morimoto L, Wiemels JL, Yang J, DeWan AT, Kang A, Ma X.

Am J Epidemiol. 2017 Oct 1;186(7):843-856. doi: 10.1093/aje/kwx160.


Tobacco Smoke and Ras Mutations Among Latino and Non-Latino Children with Acute Lymphoblastic Leukemia.

Kaur M, de Smith AJ, Selvin S, Zhang L, Cunningham M, Kang MW, Hansen HM, Cooper RM, McKean-Cowdin R, Wiemels JL, Metayer C.

Arch Med Res. 2016 Nov;47(8):677-683. doi: 10.1016/j.arcmed.2016.11.016.


Evidence for a causal relationship between low vitamin D, high BMI, and pediatric-onset MS.

Gianfrancesco MA, Stridh P, Rhead B, Shao X, Xu E, Graves JS, Chitnis T, Waldman A, Lotze T, Schreiner T, Belman A, Greenberg B, Weinstock-Guttman B, Aaen G, Tillema JM, Hart J, Caillier S, Ness J, Harris Y, Rubin J, Candee M, Krupp L, Gorman M, Benson L, Rodriguez M, Mar S, Kahn I, Rose J, Roalstad S, Casper TC, Shen L, Quach H, Quach D, Hillert J, Bäärnhielm M, Hedstrom A, Olsson T, Kockum I, Alfredsson L, Metayer C, Schaefer C, Barcellos LF, Waubant E; Network of Pediatric Multiple Sclerosis Centers.

Neurology. 2017 Apr 25;88(17):1623-1629. doi: 10.1212/WNL.0000000000003849. Epub 2017 Mar 29.


A task-based assessment of parental occupational exposure to pesticides and childhood acute lymphoblastic leukemia.

Gunier RB, Kang A, Hammond SK, Reinier K, Lea CS, Chang JS, Does M, Scelo G, Kirsch J, Crouse V, Cooper R, Quinlan P, Metayer C.

Environ Res. 2017 Jul;156:57-62. doi: 10.1016/j.envres.2017.03.001. Epub 2017 Mar 19.


Correlates of Prenatal and Early-Life Tobacco Smoke Exposure and Frequency of Common Gene Deletions in Childhood Acute Lymphoblastic Leukemia.

de Smith AJ, Kaur M, Gonseth S, Endicott A, Selvin S, Zhang L, Roy R, Shao X, Hansen HM, Kang AY, Walsh KM, Dahl GV, McKean-Cowdin R, Metayer C, Wiemels JL.

Cancer Res. 2017 Apr 1;77(7):1674-1683. doi: 10.1158/0008-5472.CAN-16-2571. Epub 2017 Feb 15.


Home remodeling and risk of childhood leukemia.

Whitehead TP, Adhatamsoontra P, Wang Y, Arcolin E, Sender L, Selvin S, Metayer C.

Ann Epidemiol. 2017 Feb;27(2):140-144.e4. doi: 10.1016/j.annepidem.2016.11.013. Epub 2016 Dec 9.


Cesarean Section and Risk of Childhood Acute Lymphoblastic Leukemia in a Population-Based, Record-Linkage Study in California.

Wang R, Wiemels JL, Metayer C, Morimoto L, Francis SS, Kadan-Lottick N, DeWan AT, Zhang Y, Ma X.

Am J Epidemiol. 2017 Jan 15;185(2):96-105. doi: 10.1093/aje/kww153. Epub 2016 Dec 16.


In utero cytomegalovirus infection and development of childhood acute lymphoblastic leukemia.

Francis SS, Wallace AD, Wendt GA, Li L, Liu F, Riley LW, Kogan S, Walsh KM, de Smith AJ, Dahl GV, Ma X, Delwart E, Metayer C, Wiemels JL.

Blood. 2017 Mar 23;129(12):1680-1684. doi: 10.1182/blood-2016-07-723148. Epub 2016 Dec 15.


Childhood Leukemia and Primary Prevention.

Whitehead TP, Metayer C, Wiemels JL, Singer AW, Miller MD.

Curr Probl Pediatr Adolesc Health Care. 2016 Oct;46(10):317-352. doi: 10.1016/j.cppeds.2016.08.004.


Childhood Leukemia: A Preventable Disease.

Metayer C, Dahl G, Wiemels J, Miller M.

Pediatrics. 2016 Nov;138(Suppl 1):S45-S55.


Perinatal factors associated with clinical presentation of osteosarcoma in children and adolescents.

Endicott AA, Morimoto LM, Kline CN, Wiemels JL, Metayer C, Walsh KM.

Pediatr Blood Cancer. 2017 Jun;64(6). doi: 10.1002/pbc.26349. Epub 2016 Nov 10.


Birth weight and risk of paediatric Hodgkin lymphoma: Findings from a population-based record linkage study in California.

Triebwasser C, Wang R, DeWan AT, Metayer C, Morimoto L, Wiemels JL, Kadan-Lottick N, Ma X.

Eur J Cancer. 2016 Dec;69:19-27. doi: 10.1016/j.ejca.2016.09.016. Epub 2016 Nov 1.


Trends in childhood leukemia incidence over two decades from 1992 to 2013.

Barrington-Trimis JL, Cockburn M, Metayer C, Gauderman WJ, Wiemels J, McKean-Cowdin R.

Int J Cancer. 2017 Mar 1;140(5):1000-1008. doi: 10.1002/ijc.30487. Epub 2016 Nov 30.


Maternal diet quality before pregnancy and risk of childhood leukaemia.

Singer AW, Carmichael SL, Selvin S, Fu C, Block G, Metayer C.

Br J Nutr. 2016 Oct;116(8):1469-1478. Epub 2016 Oct 11.


A task-based assessment of parental occupational exposure to organic solvents and other compounds and the risk of childhood leukemia in California.

Metayer C, Scelo G, Kang AY, Gunier RB, Reinier K, Lea S, Chang JS, Selvin S, Kirsch J, Crouse V, Does M, Quinlan P, Hammond SK.

Environ Res. 2016 Nov;151:174-183. doi: 10.1016/j.envres.2016.06.047. Epub 2016 Aug 3.


Clonal and microclonal mutational heterogeneity in high hyperdiploid acute lymphoblastic leukemia.

de Smith AJ, Ojha J, Francis SS, Sanders E, Endicott AA, Hansen HM, Smirnov I, Termuhlen AM, Walsh KM, Metayer C, Wiemels JL.

Oncotarget. 2016 Nov 8;7(45):72733-72745. doi: 10.18632/oncotarget.12238.


Parental Tobacco Smoking and Acute Myeloid Leukemia: The Childhood Leukemia International Consortium.

Metayer C, Petridou E, Aranguré JM, Roman E, Schüz J, Magnani C, Mora AM, Mueller BA, de Oliveira MS, Dockerty JD, McCauley K, Lightfoot T, Hatzipantelis E, Rudant J, Flores-Lujano J, Kaatsch P, Miligi L, Wesseling C, Doody DR, Moschovi M; MIGICCL Group, Orsi L, Mattioli S, Selvin S, Kang AY, Clavel J.

Am J Epidemiol. 2016 Aug 15;184(4):261-73. doi: 10.1093/aje/kww018. Epub 2016 Aug 3.


Genetic contribution to variation in DNA methylation at maternal smoking-sensitive loci in exposed neonates.

Gonseth S, de Smith AJ, Roy R, Zhou M, Lee ST, Shao X, Ohja J, Wrensch MR, Walsh KM, Metayer C, Wiemels JL.

Epigenetics. 2016 Sep;11(9):664-673. doi: 10.1080/15592294.2016.1209614. Epub 2016 Jul 12.


Childhood leukemia incidence in California: High and rising in the Hispanic population.

Giddings BM, Whitehead TP, Metayer C, Miller MD.

Cancer. 2016 Sep 15;122(18):2867-75. doi: 10.1002/cncr.30129. Epub 2016 Jun 28.


Temporal Trends of Insecticide Concentrations in Carpet Dust in California from 2001 to 2006.

Gunier RB, Nuckols JR, Whitehead TP, Colt JS, Deziel NC, Metayer C, Reynolds P, Ward MH.

Environ Sci Technol. 2016 Jul 19;50(14):7761-9. doi: 10.1021/acs.est.6b00252. Epub 2016 Jun 24.


Maternal prenatal intake of one-carbon metabolism nutrients and risk of childhood leukemia.

Singer AW, Selvin S, Block G, Golden C, Carmichael SL, Metayer C.

Cancer Causes Control. 2016 Jul;27(7):929-40. doi: 10.1007/s10552-016-0773-y. Epub 2016 Jun 13.


Common genetic variants associated with telomere length confer risk for neuroblastoma and other childhood cancers.

Walsh KM, Whitehead TP, de Smith AJ, Smirnov IV, Park M, Endicott AA, Francis SS, Codd V; ENGAGE Consortium Telomere Group, Samani NJ, Metayer C, Wiemels JL.

Carcinogenesis. 2016 Jun;37(6):576-582. doi: 10.1093/carcin/bgw037. Epub 2016 Apr 1.


Caesarean delivery and risk of childhood leukaemia: a pooled analysis from the Childhood Leukemia International Consortium (CLIC).

Marcotte EL, Thomopoulos TP, Infante-Rivard C, Clavel J, Petridou ET, Schüz J, Ezzat S, Dockerty JD, Metayer C, Magnani C, Scheurer ME, Mueller BA, Mora AM, Wesseling C, Skalkidou A, Rashed WM, Francis SS, Ajrouche R, Erdmann F, Orsi L, Spector LG.

Lancet Haematol. 2016 Apr;3(4):e176-85. doi: 10.1016/S2352-3026(16)00002-8. Epub 2016 Feb 27. Erratum in: Lancet Haematol. 2016 Apr;3(4):e162.


Pathway Analysis of Genome-wide Association Study in Childhood Leukemia among Hispanics.

Hsu LI, Briggs F, Shao X, Metayer C, Wiemels JL, Chokkalingam AP, Barcellos LF.

Cancer Epidemiol Biomarkers Prev. 2016 May;25(5):815-22. doi: 10.1158/1055-9965.EPI-15-0528. Epub 2016 Mar 3.


Birth weight, fetal growth, and risk of pediatric rhabdomyosarcoma: an updated record linkage study in California.

Morimoto LM, McCauley K, Ma X, Wiemels JL, Chokkalingam AP, Metayer C.

Ann Epidemiol. 2016 Feb;26(2):141-145. doi: 10.1016/j.annepidem.2015.11.007. Epub 2015 Dec 12.


Periconceptional folate consumption is associated with neonatal DNA methylation modifications in neural crest regulatory and cancer development genes.

Gonseth S, Roy R, Houseman EA, de Smith AJ, Zhou M, Lee ST, Nusslé S, Singer AW, Wrensch MR, Metayer C, Wiemels JL.

Epigenetics. 2015;10(12):1166-76. doi: 10.1080/15592294.2015.1117889.


Somatic Mutation Allelic Ratio Test Using ddPCR (SMART-ddPCR): An Accurate Method for Assessment of Preferential Allelic Imbalance in Tumor DNA.

de Smith AJ, Walsh KM, Hansen HM, Endicott AA, Wiencke JK, Metayer C, Wiemels JL.

PLoS One. 2015 Nov 17;10(11):e0143343. doi: 10.1371/journal.pone.0143343. eCollection 2015.


A Heritable Missense Polymorphism in CDKN2A Confers Strong Risk of Childhood Acute Lymphoblastic Leukemia and Is Preferentially Selected during Clonal Evolution.

Walsh KM, de Smith AJ, Hansen HM, Smirnov IV, Gonseth S, Endicott AA, Xiao J, Rice T, Fu CH, McCoy LS, Lachance DH, Eckel-Passow JE, Wiencke JK, Jenkins RB, Wrensch MR, Ma X, Metayer C, Wiemels JL.

Cancer Res. 2015 Nov 15;75(22):4884-94. doi: 10.1158/0008-5472.CAN-15-1105. Epub 2015 Nov 2.


A functional polymorphism in the CEBPE gene promoter influences acute lymphoblastic leukemia risk through interaction with the hematopoietic transcription factor Ikaros.

Wiemels JL, de Smith AJ, Xiao J, Lee ST, Muench MO, Fomin ME, Zhou M, Hansen HM, Termuhlen A, Metayer C, Walsh KM.

Leukemia. 2016 May;30(5):1194-7. doi: 10.1038/leu.2015.251. Epub 2015 Sep 16. No abstract available.

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