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Items: 12

1.

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome.

De Tender C, Mesuere B, Van der Jeugt F, Haegeman A, Ruttink T, Vandecasteele B, Dawyndt P, Debode J, Kuramae EE.

Sci Rep. 2019 Jul 9;9(1):9890. doi: 10.1038/s41598-019-46106-x.

2.

A Method for Comprehensive Proteomic Analysis of Human Faecal Samples to Investigate Gut Dysbiosis in Patients with Cystic Fibrosis.

Debyser G, Aerts M, Van Hecke P, Mesuere B, Duytschaever G, Dawyndt P, De Boeck K, Vandamme P, Devreese B.

Adv Exp Med Biol. 2019;1073:137-160. doi: 10.1007/978-3-030-12298-0_6.

PMID:
31236842
3.

metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes.

Easterly CW, Sajulga R, Mehta S, Johnson J, Kumar P, Hubler S, Mesuere B, Rudney J, Griffin TJ, Jagtap PD.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S82-S91. doi: 10.1074/mcp.RA118.001240. Epub 2019 Jun 24.

4.

Unipept 4.0: Functional Analysis of Metaproteome Data.

Gurdeep Singh R, Tanca A, Palomba A, Van der Jeugt F, Verschaffelt P, Uzzau S, Martens L, Dawyndt P, Mesuere B.

J Proteome Res. 2019 Feb 1;18(2):606-615. doi: 10.1021/acs.jproteome.8b00716. Epub 2018 Dec 4.

PMID:
30465426
5.

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD.

Proteomes. 2018 Jan 31;6(1). pii: E7. doi: 10.3390/proteomes6010007.

6.

High-throughput metaproteomics data analysis with Unipept: A tutorial.

Mesuere B, Van der Jeugt F, Willems T, Naessens T, Devreese B, Martens L, Dawyndt P.

J Proteomics. 2018 Jan 16;171:11-22. doi: 10.1016/j.jprot.2017.05.022. Epub 2017 May 24.

PMID:
28552653
7.

The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics.

Mesuere B, Van der Jeugt F, Devreese B, Vandamme P, Dawyndt P.

Proteomics. 2016 Sep;16(17):2313-8. doi: 10.1002/pmic.201600023. Epub 2016 Aug 16.

PMID:
27380722
8.

Unipept web services for metaproteomics analysis.

Mesuere B, Willems T, Van der Jeugt F, Devreese B, Vandamme P, Dawyndt P.

Bioinformatics. 2016 Jun 1;32(11):1746-8. doi: 10.1093/bioinformatics/btw039. Epub 2016 Jan 27.

PMID:
26819472
9.

Faecal proteomics: A tool to investigate dysbiosis and inflammation in patients with cystic fibrosis.

Debyser G, Mesuere B, Clement L, Van de Weygaert J, Van Hecke P, Duytschaever G, Aerts M, Dawyndt P, De Boeck K, Vandamme P, Devreese B.

J Cyst Fibros. 2016 Mar;15(2):242-50. doi: 10.1016/j.jcf.2015.08.003. Epub 2015 Aug 30.

10.

The Unipept metaproteomics analysis pipeline.

Mesuere B, Debyser G, Aerts M, Devreese B, Vandamme P, Dawyndt P.

Proteomics. 2015 Apr;15(8):1437-42. doi: 10.1002/pmic.201400361. Epub 2015 Feb 11.

PMID:
25477242
11.

Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples.

Mesuere B, Devreese B, Debyser G, Aerts M, Vandamme P, Dawyndt P.

J Proteome Res. 2012 Dec 7;11(12):5773-80. doi: 10.1021/pr300576s. Epub 2012 Nov 26.

PMID:
23153116
12.

Application of MALDI-TOF mass spectrometry for the detection of enterotoxins produced by pathogenic strains of the Bacillus cereus group.

Tsilia V, Devreese B, de Baenst I, Mesuere B, Rajkovic A, Uyttendaele M, Van de Wiele T, Heyndrickx M.

Anal Bioanal Chem. 2012 Oct;404(6-7):1691-702. doi: 10.1007/s00216-012-6254-6. Epub 2012 Aug 9.

PMID:
22875537

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