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Items: 25

1.

RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation.

Taliaferro JM, Lambert NJ, Sudmant PH, Dominguez D, Merkin JJ, Alexis MS, Bazile C, Burge CB.

Mol Cell. 2016 Oct 20;64(2):294-306. doi: 10.1016/j.molcel.2016.08.035. Epub 2016 Oct 6.

2.

Paradoxical Roles of Elongation Factor-2 Kinase in Stem Cell Survival.

Liao Y, Chu HP, Hu Z, Merkin JJ, Chen J, Liu Z, Degenhardt K, White E, Ryazanov AG.

J Biol Chem. 2016 Sep 9;291(37):19545-57. doi: 10.1074/jbc.M116.724856. Epub 2016 Jul 27.

3.

High-throughput screening using patient-derived tumor xenografts to predict clinical trial drug response.

Gao H, Korn JM, Ferretti S, Monahan JE, Wang Y, Singh M, Zhang C, Schnell C, Yang G, Zhang Y, Balbin OA, Barbe S, Cai H, Casey F, Chatterjee S, Chiang DY, Chuai S, Cogan SM, Collins SD, Dammassa E, Ebel N, Embry M, Green J, Kauffmann A, Kowal C, Leary RJ, Lehar J, Liang Y, Loo A, Lorenzana E, Robert McDonald E 3rd, McLaughlin ME, Merkin J, Meyer R, Naylor TL, Patawaran M, Reddy A, Röelli C, Ruddy DA, Salangsang F, Santacroce F, Singh AP, Tang Y, Tinetto W, Tobler S, Velazquez R, Venkatesan K, Von Arx F, Wang HQ, Wang Z, Wiesmann M, Wyss D, Xu F, Bitter H, Atadja P, Lees E, Hofmann F, Li E, Keen N, Cozens R, Jensen MR, Pryer NK, Williams JA, Sellers WR.

Nat Med. 2015 Nov;21(11):1318-25. doi: 10.1038/nm.3954. Epub 2015 Oct 19.

PMID:
26479923
4.

Origins and impacts of new mammalian exons.

Merkin JJ, Chen P, Alexis MS, Hautaniemi SK, Burge CB.

Cell Rep. 2015 Mar 31;10(12):1992-2005. doi: 10.1016/j.celrep.2015.02.058. Epub 2015 Mar 19.

5.

Germline quality control: eEF2K stands guard to eliminate defective oocytes.

Chu HP, Liao Y, Novak JS, Hu Z, Merkin JJ, Shymkiv Y, Braeckman BP, Dorovkov MV, Nguyen A, Clifford PM, Nagele RG, Harrison DE, Ellis RE, Ryazanov AG.

Dev Cell. 2014 Mar 10;28(5):561-572. doi: 10.1016/j.devcel.2014.01.027. Epub 2014 Feb 27.

6.

Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

Merkin J, Russell C, Chen P, Burge CB.

Science. 2012 Dec 21;338(6114):1593-9. doi: 10.1126/science.1228186.

7.

Alternative splicing of RNA triplets is often regulated and accelerates proteome evolution.

Bradley RK, Merkin J, Lambert NJ, Burge CB.

PLoS Biol. 2012 Jan;10(1):e1001229. doi: 10.1371/journal.pbio.1001229. Epub 2012 Jan 3.

8.

The effects of a complexing agent on the transverse stability of cubic autocatalytic reaction fronts.

Merkin JH.

J Chem Phys. 2009 Jul 21;131(3):034506. doi: 10.1063/1.3176895.

PMID:
19624208
9.

Interaction between buoyancy and diffusion-driven instabilities of propagating autocatalytic reaction fronts. II. Nonlinear simulations.

D'Hernoncourt J, Merkin JH, De Wit A.

J Chem Phys. 2009 Mar 21;130(11):114503. doi: 10.1063/1.3077181.

PMID:
19317541
10.

Interaction between buoyancy and diffusion-driven instabilities of propagating autocatalytic reaction fronts. I. Linear stability analysis.

D'Hernoncourt J, Merkin JH, De Wit A.

J Chem Phys. 2009 Mar 21;130(11):114502. doi: 10.1063/1.3077180.

PMID:
19317540
11.

The effect of the order of the autocatalysis on the transverse stability of reaction fronts.

Merkin JH.

J Chem Phys. 2008 Jul 21;129(3):034507. doi: 10.1063/1.2953313.

PMID:
18647031
12.

Front fingering and complex dynamics driven by the interaction of buoyancy and diffusive instabilities.

D'Hernoncourt J, Merkin JH, De Wit A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):035301. Epub 2007 Sep 10.

PMID:
17930295
13.

Effects of a constant electric field on the diffusional instability of cubic autocatalytic reaction fronts.

D'Hernoncourt J, De Wit A, Merkin JH.

J Chem Phys. 2007 Mar 14;126(10):104504.

PMID:
17362072
14.

The emergence of wave emitting centres in an excitable medium.

Godula T, Sevcikova H, Merkin JH.

J Theor Biol. 2006 May 7;240(1):136-48. Epub 2005 Oct 19.

PMID:
16242729
15.

Dispersion curves in the diffusional instability of autocatalytic reaction fronts.

Merkin JH, Kiss IZ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug;72(2 Pt 2):026219. Epub 2005 Aug 24.

PMID:
16196696
16.

Effects of constant electric fields on the buoyant stability of reaction fronts.

Zadrazil A, Kiss IZ, D'Hernoncourt J, Sevcíková H, Merkin JH, De Wit A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Feb;71(2 Pt 2):026224. Epub 2005 Feb 8.

PMID:
15783404
17.

On the spread of morphogens.

Merkin JH, Sleeman BD.

J Math Biol. 2005 Jul;51(1):1-17. Epub 2004 Dec 20.

PMID:
15614544
18.

Homogenization induced by chaotic mixing and diffusion in an oscillatory chemical reaction.

Kiss IZ, Merkin JH, Neufeld Z.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Aug;70(2 Pt 2):026216. Epub 2004 Aug 30.

PMID:
15447574
19.

Isothermal flame balls: effect of autocatalyst decay.

Jakab E, Horváth D, Merkin JH, Scott SK, Simon PL, Tóth A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 2):036210. Epub 2003 Sep 19.

PMID:
14524871
20.
21.

Wave propagation in distributed media.

Yang J, Kalliadasis S, Merkin JH, Scott SK.

Chaos. 2001 Sep;11(3):479-486.

PMID:
12779485
22.

Isothermal flame balls.

Jakab E, Horváth D, Merkin JH, Scott SK, Simon PL, Tóth A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jul;66(1 Pt 2):016207. Epub 2002 Jul 15.

PMID:
12241461
23.

Autocatalysis in a shear flow.

Allen MA, Brindley J, Merkin JH, Pilling MJ.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Aug;54(2):2140-2142. No abstract available.

PMID:
9965300
24.

Wave-induced chemical chaos.

Merkin JH, Petrov V V, Scott SK, Showalter K.

Phys Rev Lett. 1996 Jan 15;76(3):546-549. No abstract available.

PMID:
10061484
25.

The effects of two new compensating filters on patient exposure in chiropractic full spine radiography.

Merkin JJ, Sportelli L.

J Manipulative Physiol Ther. 1982 Mar;5(1):25-9. No abstract available.

PMID:
7077189

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