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Cis-regulatory CYP6P9b P450 variants associated with loss of insecticide-treated bed net efficacy against Anopheles funestus.

Mugenzi LMJ, Menze BD, Tchouakui M, Wondji MJ, Irving H, Tchoupo M, Hearn J, Weedall GD, Riveron JM, Wondji CS.

Nat Commun. 2019 Oct 11;10(1):4652. doi: 10.1038/s41467-019-12686-5.


Towards quantitative imaging biomarkers of tumor dissemination: A multi-scale parametric modeling of multiple myeloma.

Piraud M, Wennmann M, Kintzelé L, Hillengass J, Keller U, Langs G, Weber MA, Menze BH.

Med Image Anal. 2019 Oct;57:214-225. doi: 10.1016/ Epub 2019 Jul 4.


Deep learning derived tumor infiltration maps for personalized target definition in Glioblastoma radiotherapy.

Peeken JC, Molina-Romero M, Diehl C, Menze BH, Straube C, Meyer B, Zimmer C, Wiestler B, Combs SE.

Radiother Oncol. 2019 Sep;138:166-172. doi: 10.1016/j.radonc.2019.06.031. Epub 2019 Jul 11.


Cardiovascular Magnetic Resonance-Based Three-Dimensional Structural Modeling and Heterogeneous Tissue Channel Detection in Ventricular Arrhythmia.

Jang J, Hwang HJ, Tschabrunn CM, Whitaker J, Menze B, Anter E, Nezafat R.

Sci Rep. 2019 Jun 27;9(1):9317. doi: 10.1038/s41598-019-45586-1.


Designing contrasts for rapid, simultaneous parameter quantification and flow visualization with quantitative transient-state imaging.

Gómez PA, Molina-Romero M, Buonincontri G, Menzel MI, Menze BH.

Sci Rep. 2019 Jun 11;9(1):8468. doi: 10.1038/s41598-019-44832-w.


Local Conduction Velocity in the Presence of Late Gadolinium Enhancement and Myocardial Wall Thinning.

Jang J, Whitaker J, Leshem E, Ngo LH, Neisius U, Nakamori S, Pashakhanloo F, Menze B, Manning WJ, Anter E, Nezafat R.

Circ Arrhythm Electrophysiol. 2019 May;12(5):e007175. doi: 10.1161/CIRCEP.119.007175.


A cytochrome P450 allele confers pyrethroid resistance on a major African malaria vector, reducing insecticide-treated bednet efficacy.

Weedall GD, Mugenzi LMJ, Menze BD, Tchouakui M, Ibrahim SS, Amvongo-Adjia N, Irving H, Wondji MJ, Tchoupo M, Djouaka R, Riveron JM, Wondji CS.

Sci Transl Med. 2019 Mar 20;11(484). pii: eaat7386. doi: 10.1126/scitranslmed.aat7386.


qPSMA: Semiautomatic Software for Whole-Body Tumor Burden Assessment in Prostate Cancer Using 68Ga-PSMA11 PET/CT.

Gafita A, Bieth M, Krönke M, Tetteh G, Navarro F, Wang H, Günther E, Menze B, Weber WA, Eiber M.

J Nucl Med. 2019 Sep;60(9):1277-1283. doi: 10.2967/jnumed.118.224055. Epub 2019 Mar 8.


Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference.

Lipkova J, Angelikopoulos P, Wu S, Alberts E, Wiestler B, Diehl C, Preibisch C, Pyka T, Combs SE, Hadjidoukas P, Van Leemput K, Koumoutsakos P, Lowengrub J, Menze B.

IEEE Trans Med Imaging. 2019 Aug;38(8):1875-1884. doi: 10.1109/TMI.2019.2902044. Epub 2019 Feb 27.


Author Correction: Why rankings of biomedical image analysis competitions should be interpreted with care.

Maier-Hein L, Eisenmann M, Reinke A, Onogur S, Stankovic M, Scholz P, Arbel T, Bogunovic H, Bradley AP, Carass A, Feldmann C, Frangi AF, Full PM, van Ginneken B, Hanbury A, Honauer K, Kozubek M, Landman BA, März K, Maier O, Maier-Hein K, Menze BH, Müller H, Neher PF, Niessen W, Rajpoot N, Sharp GC, Sirinukunwattana K, Speidel S, Stock C, Stoyanov D, Taha AA, van der Sommen F, Wang CW, Weber MA, Zheng G, Jannin P, Kopp-Schneider A.

Nat Commun. 2019 Jan 30;10(1):588. doi: 10.1038/s41467-019-08563-w.


Convolutional Neural Networks for Direct Inference of Pharmacokinetic Parameters: Application to Stroke Dynamic Contrast-Enhanced MRI.

Ulas C, Das D, Thrippleton MJ, Valdés Hernández MDC, Armitage PA, Makin SD, Wardlaw JM, Menze BH.

Front Neurol. 2019 Jan 8;9:1147. doi: 10.3389/fneur.2018.01147. eCollection 2018.


Measuring large lipid droplet sizes by probing restricted lipid diffusion effects with diffusion-weighted MRS at 3T.

Weidlich D, Honecker J, Gmach O, Wu M, Burgkart R, Ruschke S, Franz D, Menze BH, Skurk T, Hauner H, Kulozik U, Karampinos DC.

Magn Reson Med. 2019 Jun;81(6):3427-3439. doi: 10.1002/mrm.27651. Epub 2019 Jan 16.


Knowledge-Aided Convolutional Neural Network for Small Organ Segmentation.

Zhao Y, Li H, Wan S, Sekuboyina A, Hu X, Tetteh G, Piraud M, Menze B.

IEEE J Biomed Health Inform. 2019 Jul;23(4):1363-1373. doi: 10.1109/JBHI.2019.2891526. Epub 2019 Jan 9.


Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections.

Cai R, Pan C, Ghasemigharagoz A, Todorov MI, Förstera B, Zhao S, Bhatia HS, Parra-Damas A, Mrowka L, Theodorou D, Rempfler M, Xavier ALR, Kress BT, Benakis C, Steinke H, Liebscher S, Bechmann I, Liesz A, Menze B, Kerschensteiner M, Nedergaard M, Ertürk A.

Nat Neurosci. 2019 Feb;22(2):317-327. doi: 10.1038/s41593-018-0301-3. Epub 2018 Dec 31.


Why rankings of biomedical image analysis competitions should be interpreted with care.

Maier-Hein L, Eisenmann M, Reinke A, Onogur S, Stankovic M, Scholz P, Arbel T, Bogunovic H, Bradley AP, Carass A, Feldmann C, Frangi AF, Full PM, van Ginneken B, Hanbury A, Honauer K, Kozubek M, Landman BA, März K, Maier O, Maier-Hein K, Menze BH, Müller H, Neher PF, Niessen W, Rajpoot N, Sharp GC, Sirinukunwattana K, Speidel S, Stock C, Stoyanov D, Taha AA, van der Sommen F, Wang CW, Weber MA, Zheng G, Jannin P, Kopp-Schneider A.

Nat Commun. 2018 Dec 6;9(1):5217. doi: 10.1038/s41467-018-07619-7. Erratum in: Nat Commun. 2019 Jan 30;10(1):588.


Three-dimensional holographic visualization of high-resolution myocardial scar on HoloLens.

Jang J, Tschabrunn CM, Barkagan M, Anter E, Menze B, Nezafat R.

PLoS One. 2018 Oct 8;13(10):e0205188. doi: 10.1371/journal.pone.0205188. eCollection 2018.


Impact of Temporal Heterogeneity of Acute Hypoxia on the Radiation Response of Experimental Tumors.

Xu L, Vaupel P, Menze BH, Shi K.

Adv Exp Med Biol. 2018;1072:189-194. doi: 10.1007/978-3-319-91287-5_30.


Bionomics and insecticides resistance profiling of malaria vectors at a selected site for experimental hut trials in central Cameroon.

Menze BD, Wondji MJ, Tchapga W, Tchoupo M, Riveron JM, Wondji CS.

Malar J. 2018 Aug 30;17(1):317. doi: 10.1186/s12936-018-2467-2.


Fully convolutional network ensembles for white matter hyperintensities segmentation in MR images.

Li H, Jiang G, Zhang J, Wang R, Wang Z, Zheng WS, Menze B.

Neuroimage. 2018 Dec;183:650-665. doi: 10.1016/j.neuroimage.2018.07.005. Epub 2018 Aug 18.


Automated Cardiac MR Scar Quantification in Hypertrophic Cardiomyopathy Using Deep Convolutional Neural Networks.

Fahmy AS, Rausch J, Neisius U, Chan RH, Maron MS, Appelbaum E, Menze B, Nezafat R.

JACC Cardiovasc Imaging. 2018 Dec;11(12):1917-1918. doi: 10.1016/j.jcmg.2018.04.030. Epub 2018 Aug 15. No abstract available.


High-resolution echo-planar spectroscopic imaging at ultra-high field.

Coello E, Noeske R, Burns BL, Gordon JW, Jakary A, Menze B, Haase A, Larson PEZ, Li Y, Schulte RF.

NMR Biomed. 2018 Nov;31(11):e3950. doi: 10.1002/nbm.3950. Epub 2018 Jul 27.


S-Leaping: An Adaptive, Accelerated Stochastic Simulation Algorithm, Bridging [Formula: see text]-Leaping and R-Leaping.

Lipková J, Arampatzis G, Chatelain P, Menze B, Koumoutsakos P.

Bull Math Biol. 2019 Aug;81(8):3074-3096. doi: 10.1007/s11538-018-0464-9. Epub 2018 Jul 10.


Tracing cell lineages in videos of lens-free microscopy.

Rempfler M, Stierle V, Ditzel K, Kumar S, Paulitschke P, Andres B, Menze BH.

Med Image Anal. 2018 Aug;48:147-161. doi: 10.1016/ Epub 2018 Jun 5.


Volumetry based biomarker speed of growth: Quantifying the change of total tumor volume in whole-body magnetic resonance imaging over time improves risk stratification of smoldering multiple myeloma patients.

Wennmann M, Kintzelé L, Piraud M, Menze BH, Hielscher T, Hofmanninger J, Wagner B, Kauczor HU, Merz M, Hillengass J, Langs G, Weber MA.

Oncotarget. 2018 May 18;9(38):25254-25264. doi: 10.18632/oncotarget.25402. eCollection 2018 May 18.


Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach.

Han X, Kwitt R, Aylward S, Bakas S, Menze B, Asturias A, Vespa P, Van Horn J, Niethammer M.

Neuroimage. 2018 Aug 1;176:431-445. doi: 10.1016/j.neuroimage.2018.04.073. Epub 2018 May 4.


Wall shear stress estimation in the aorta: Impact of wall motion, spatiotemporal resolution, and phase noise.

Zimmermann J, Demedts D, Mirzaee H, Ewert P, Stern H, Meierhofer C, Menze B, Hennemuth A.

J Magn Reson Imaging. 2018 Apr 1. doi: 10.1002/jmri.26007. [Epub ahead of print]


A diffusion model-free framework with echo time dependence for free-water elimination and brain tissue microstructure characterization.

Molina-Romero M, Gómez PA, Sperl JI, Czisch M, Sämann PG, Jones DK, Menzel MI, Menze BH.

Magn Reson Med. 2018 Nov;80(5):2155-2172. doi: 10.1002/mrm.27181. Epub 2018 Mar 23.


Automated Whole-Body Bone Lesion Detection for Multiple Myeloma on 68Ga-Pentixafor PET/CT Imaging Using Deep Learning Methods.

Xu L, Tetteh G, Lipkova J, Zhao Y, Li H, Christ P, Piraud M, Buck A, Shi K, Menze BH.

Contrast Media Mol Imaging. 2018 Jan 8;2018:2391925. doi: 10.1155/2018/2391925. eCollection 2018.


Diffusion tensor image features predict IDH genotype in newly diagnosed WHO grade II/III gliomas.

Eichinger P, Alberts E, Delbridge C, Trebeschi S, Valentinitsch A, Bette S, Huber T, Gempt J, Meyer B, Schlegel J, Zimmer C, Kirschke JS, Menze BH, Wiestler B.

Sci Rep. 2017 Oct 17;7(1):13396. doi: 10.1038/s41598-017-13679-4.


Computational Simulation of Tumor Hypoxia Based on In Vivo Microvasculature Assessed in a Dorsal Skin Window Chamber.

Xu L, Vaupel P, Bai S, Menze B, Shi K.

Adv Exp Med Biol. 2017;977:109-117. doi: 10.1007/978-3-319-55231-6_15.


Segmentation of Skeleton and Organs in Whole-Body CT Images via Iterative Trilateration.

Bieth M, Peter L, Nekolla SG, Eiber M, Langs G, Schwaiger M, Menze B.

IEEE Trans Med Imaging. 2017 Nov;36(11):2276-2286. doi: 10.1109/TMI.2017.2720261. Epub 2017 Jun 27.


Exploring New Multimodal Quantitative Imaging Indices for the Assessment of Osseous Tumor Burden in Prostate Cancer Using 68Ga-PSMA PET/CT.

Bieth M, Krönke M, Tauber R, Dahlbender M, Retz M, Nekolla SG, Menze B, Maurer T, Eiber M, Schwaiger M.

J Nucl Med. 2017 Oct;58(10):1632-1637. doi: 10.2967/jnumed.116.189050. Epub 2017 May 25.


Automated processing of webcam images for phenological classification.

Bothmann L, Menzel A, Menze BH, Schunk C, Kauermann G.

PLoS One. 2017 Feb 24;12(2):e0171918. doi: 10.1371/journal.pone.0171918. eCollection 2017.


Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks.

Jimenez-Del-Toro O, Muller H, Krenn M, Gruenberg K, Taha AA, Winterstein M, Eggel I, Foncubierta-Rodriguez A, Goksel O, Jakab A, Kontokotsios G, Langs G, Menze BH, Salas Fernandez T, Schaer R, Walleyo A, Weber MA, Dicente Cid Y, Gass T, Heinrich M, Jia F, Kahl F, Kechichian R, Mai D, Spanier AB, Vincent G, Wang C, Wyeth D, Hanbury A.

IEEE Trans Med Imaging. 2016 Nov;35(11):2459-2475. Epub 2016 Jun 9.


Multiple Insecticide Resistance in the Malaria Vector Anopheles funestus from Northern Cameroon Is Mediated by Metabolic Resistance Alongside Potential Target Site Insensitivity Mutations.

Menze BD, Riveron JM, Ibrahim SS, Irving H, Antonio-Nkondjio C, Awono-Ambene PH, Wondji CS.

PLoS One. 2016 Oct 10;11(10):e0163261. doi: 10.1371/journal.pone.0163261. eCollection 2016.


Automatic segmentation of abdominal organs and adipose tissue compartments in water-fat MRI: Application to weight-loss in obesity.

Shen J, Baum T, Cordes C, Ott B, Skurk T, Kooijman H, Rummeny EJ, Hauner H, Menze BH, Karampinos DC.

Eur J Radiol. 2016 Sep;85(9):1613-21. doi: 10.1016/j.ejrad.2016.06.006. Epub 2016 Jun 8.


ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI.

Maier O, Menze BH, von der Gablentz J, Ḧani L, Heinrich MP, Liebrand M, Winzeck S, Basit A, Bentley P, Chen L, Christiaens D, Dutil F, Egger K, Feng C, Glocker B, Götz M, Haeck T, Halme HL, Havaei M, Iftekharuddin KM, Jodoin PM, Kamnitsas K, Kellner E, Korvenoja A, Larochelle H, Ledig C, Lee JH, Maes F, Mahmood Q, Maier-Hein KH, McKinley R, Muschelli J, Pal C, Pei L, Rangarajan JR, Reza SMS, Robben D, Rueckert D, Salli E, Suetens P, Wang CW, Wilms M, Kirschke JS, Kr Amer UM, Münte TF, Schramm P, Wiest R, Handels H, Reyes M.

Med Image Anal. 2017 Jan;35:250-269. doi: 10.1016/ Epub 2016 Jul 21.


A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation--With Application to Tumor and Stroke.

Menze BH, Van Leemput K, Lashkari D, Riklin-Raviv T, Geremia E, Alberts E, Gruber P, Wegener S, Weber MA, Szekely G, Ayache N, Golland P.

IEEE Trans Med Imaging. 2016 Apr;35(4):933-46. doi: 10.1109/TMI.2015.2502596. Epub 2015 Nov 20.


Rise of multiple insecticide resistance in Anopheles funestus in Malawi: a major concern for malaria vector control.

Riveron JM, Chiumia M, Menze BD, Barnes KG, Irving H, Ibrahim SS, Weedall GD, Mzilahowa T, Wondji CS.

Malar J. 2015 Sep 15;14:344. doi: 10.1186/s12936-015-0877-y.


Reconstructing cerebrovascular networks under local physiological constraints by integer programming.

Rempfler M, Schneider M, Ielacqua GD, Xiao X, Stock SR, Klohs J, Székely G, Andres B, Menze BH.

Med Image Anal. 2015 Oct;25(1):86-94. doi: 10.1016/ Epub 2015 Apr 23.


The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N, Corso JJ, Criminisi A, Das T, Delingette H, Demiralp Ç, Durst CR, Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P, Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E, Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J, Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM, Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B, Zikic D, Prastawa M, Reyes M, Van Leemput K.

IEEE Trans Med Imaging. 2015 Oct;34(10):1993-2024. doi: 10.1109/TMI.2014.2377694. Epub 2014 Dec 4. Review.


Extracting vascular networks under physiological constraints via integer programming.

Rempfler M, Schneider M, Ielacqua GD, Xiao X, Stock SR, Klohs J, Székely G, Andres B, Menze BH.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):505-12.


TGIF: topological gap in-fill for vascular networks--a generative physiological modeling approach.

Schneider M, Hirsch S, Weber B, Székely G, Menze BH.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):89-96.


Joint 3-D vessel segmentation and centerline extraction using oblique Hough forests with steerable filters.

Schneider M, Hirsch S, Weber B, Székely G, Menze BH.

Med Image Anal. 2015 Jan;19(1):220-49. doi: 10.1016/ Epub 2014 Oct 15.


Spatio-temporal video segmentation with shape growth or shrinkage constraint.

Tarabalka Y, Charpiat G, Brucker L, Menze BH.

IEEE Trans Image Process. 2014 Sep;23(9):3829-40. doi: 10.1109/TIP.2014.2336544. Epub 2014 Jul 8.


Sparse scale-space decomposition of volume changes in deformations fields.

Lorenzi M, Menze BH, Niethammer M, Ayache N, Pennec X; Alzheimers Disease Neuroimaging Initiative.

Med Image Comput Comput Assist Interv. 2013;16(Pt 2):328-35.


A single mutation in the GSTe2 gene allows tracking of metabolically based insecticide resistance in a major malaria vector.

Riveron JM, Yunta C, Ibrahim SS, Djouaka R, Irving H, Menze BD, Ismail HM, Hemingway J, Ranson H, Albert A, Wondji CS.

Genome Biol. 2014 Feb 25;15(2):R27. doi: 10.1186/gb-2014-15-2-r27.


Radiotherapy planning for glioblastoma based on a tumor growth model: implications for spatial dose redistribution.

Unkelbach J, Menze BH, Konukoglu E, Dittmann F, Ayache N, Shih HA.

Phys Med Biol. 2014 Feb 7;59(3):771-89. doi: 10.1088/0031-9155/59/3/771. Epub 2014 Jan 20.


Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation.

Unkelbach J, Menze BH, Konukoglu E, Dittmann F, Le M, Ayache N, Shih HA.

Phys Med Biol. 2014 Feb 7;59(3):747-70. doi: 10.1088/0031-9155/59/3/747. Epub 2014 Jan 20.


Whole-body anatomy localization via classification and regression forests.

Menze B, Langs G, Tu Z, Criminisi A.

Med Image Anal. 2013 Dec;17(8):1282. doi: 10.1016/ No abstract available.


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