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Items: 16

1.

Coordinate regulation of ELF5 and EHF at the chr11p13 CF modifier region.

Swahn H, Sabith Ebron J, Lamar KM, Yin S, Kerschner JL, NandyMazumdar M, Coppola C, Mendenhall EM, Leir SH, Harris A.

J Cell Mol Med. 2019 Sep 26. doi: 10.1111/jcmm.14646. [Epub ahead of print]

2.

Characterization of Coding/Noncoding Variants for SHROOM3 in Patients with CKD.

Prokop JW, Yeo NC, Ottmann C, Chhetri SB, Florus KL, Ross EJ, Sosonkina N, Link BA, Freedman BI, Coppola CJ, McDermott-Roe C, Leysen S, Milroy LG, Meijer FA, Geurts AM, Rauscher FJ 3rd, Ramaker R, Flister MJ, Jacob HJ, Mendenhall EM, Lazar J.

J Am Soc Nephrol. 2018 May;29(5):1525-1535. doi: 10.1681/ASN.2017080856. Epub 2018 Feb 23.

3.

Identification and function of enhancers in the human genome.

Coppola CJ, C Ramaker R, Mendenhall EM.

Hum Mol Genet. 2016 Oct 1;25(R2):R190-R197. Epub 2016 Jul 8. Review.

PMID:
27402881
4.

Every transcription factor deserves its map: Scaling up epitope tagging of proteins to bypass antibody problems.

Partridge EC, Watkins TA, Mendenhall EM.

Bioessays. 2016 Aug;38(8):801-11. doi: 10.1002/bies.201600028. Epub 2016 Jun 17. Review.

PMID:
27311628
5.

CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins.

Savic D, Partridge EC, Newberry KM, Smith SB, Meadows SK, Roberts BS, Mackiewicz M, Mendenhall EM, Myers RM.

Genome Res. 2015 Oct;25(10):1581-9. doi: 10.1101/gr.193540.115. Epub 2015 Sep 9.

6.

Htt CAG repeat expansion confers pleiotropic gains of mutant huntingtin function in chromatin regulation.

Biagioli M, Ferrari F, Mendenhall EM, Zhang Y, Erdin S, Vijayvargia R, Vallabh SM, Solomos N, Manavalan P, Ragavendran A, Ozsolak F, Lee JM, Talkowski ME, Gusella JF, Macdonald ME, Park PJ, Seong IS.

Hum Mol Genet. 2015 May 1;24(9):2442-57. doi: 10.1093/hmg/ddv006. Epub 2015 Jan 8.

7.

Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis.

Attanasio C, Nord AS, Zhu Y, Blow MJ, Biddie SC, Mendenhall EM, Dixon J, Wright C, Hosseini R, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Afzal V, Ren B, Bernstein BE, Rubin EM, Visel A, Pennacchio LA.

Genome Res. 2014 Jun;24(6):920-9. doi: 10.1101/gr.168930.113. Epub 2014 Apr 21.

8.

Locus-specific editing of histone modifications at endogenous enhancers.

Mendenhall EM, Williamson KE, Reyon D, Zou JY, Ram O, Joung JK, Bernstein BE.

Nat Biotechnol. 2013 Dec;31(12):1133-6. doi: 10.1038/nbt.2701. Epub 2013 Sep 8.

9.

DNA-protein interactions in high definition.

Mendenhall EM, Bernstein BE.

Genome Biol. 2012 Jan 27;13(1):139. doi: 10.1186/gb-2012-13-1-139.

10.

GC-rich sequence elements recruit PRC2 in mammalian ES cells.

Mendenhall EM, Koche RP, Truong T, Zhou VW, Issac B, Chi AS, Ku M, Bernstein BE.

PLoS Genet. 2010 Dec 9;6(12):e1001244. doi: 10.1371/journal.pgen.1001244.

11.

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.

Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE.

PLoS Genet. 2008 Oct;4(10):e1000242. doi: 10.1371/journal.pgen.1000242. Epub 2008 Oct 31.

12.

Chromatin state maps: new technologies, new insights.

Mendenhall EM, Bernstein BE.

Curr Opin Genet Dev. 2008 Apr;18(2):109-15. doi: 10.1016/j.gde.2008.01.010. Epub 2008 Mar 12. Review.

13.

Genome-wide reverse genetics framework to identify novel functions of the vertebrate secretome.

Pickart MA, Klee EW, Nielsen AL, Sivasubbu S, Mendenhall EM, Bill BR, Chen E, Eckfeldt CE, Knowlton M, Robu ME, Larson JD, Deng Y, Schimmenti LA, Ellis LB, Verfaillie CM, Hammerschmidt M, Farber SA, Ekker SC.

PLoS One. 2006 Dec 20;1:e104.

14.

The molecular repertoire of the 'almighty' stem cell.

Eckfeldt CE, Mendenhall EM, Verfaillie CM.

Nat Rev Mol Cell Biol. 2005 Sep;6(9):726-37. Review.

PMID:
16103873
15.

Functional analysis of human hematopoietic stem cell gene expression using zebrafish.

Eckfeldt CE, Mendenhall EM, Flynn CM, Wang TF, Pickart MA, Grindle SM, Ekker SC, Verfaillie CM.

PLoS Biol. 2005 Aug;3(8):e254. Epub 2005 Jul 5.

16.

Characterization of expanded intermediate cell mass in zebrafish chordin morphant embryos.

Leung AY, Mendenhall EM, Kwan TT, Liang R, Eckfeldt C, Chen E, Hammerschmidt M, Grindley S, Ekker SC, Verfaillie CM.

Dev Biol. 2005 Jan 1;277(1):235-54.

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