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Items: 26

1.

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay088.

2.

Antibiotic Stewardship in the Neonatal Intensive Care Unit: Effects of an Automatic 48-Hour Antibiotic Stop Order on Antibiotic Use.

Astorga MC, Piscitello KJ, Menda N, Ebert AM, Ebert SC, Porte MA, Kling PJ.

J Pediatric Infect Dis Soc. 2018 May 28. doi: 10.1093/jpids/piy043. [Epub ahead of print]

PMID:
29846666
3.

Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato.

Li J, Chitwood J, Menda N, Mueller L, Hutton SF.

Theor Appl Genet. 2018 Jan;131(1):145-155. doi: 10.1007/s00122-017-2991-4. Epub 2017 Oct 6.

PMID:
28986627
4.

Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives.

Strickler SR, Bombarely A, Munkvold JD, York T, Menda N, Martin GB, Mueller LA.

PeerJ. 2015 Feb 26;3:e793. doi: 10.7717/peerj.793. eCollection 2015.

5.

An ontology approach to comparative phenomics in plants.

Oellrich A, Walls RL, Cannon EK, Cannon SB, Cooper L, Gardiner J, Gkoutos GV, Harper L, He M, Hoehndorf R, Jaiswal P, Kalberer SR, Lloyd JP, Meinke D, Menda N, Moore L, Nelson RT, Pujar A, Lawrence CJ, Huala E.

Plant Methods. 2015 Feb 25;11:10. doi: 10.1186/s13007-015-0053-y. eCollection 2015.

6.

solGS: a web-based tool for genomic selection.

Tecle IY, Edwards JD, Menda N, Egesi C, Rabbi IY, Kulakow P, Kawuki R, Jannink JL, Mueller LA.

BMC Bioinformatics. 2014 Dec 14;15:398. doi: 10.1186/s12859-014-0398-7.

7.

The Sol Genomics Network (SGN)--from genotype to phenotype to breeding.

Fernandez-Pozo N, Menda N, Edwards JD, Saha S, Tecle IY, Strickler SR, Bombarely A, Fisher-York T, Pujar A, Foerster H, Yan A, Mueller LA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1036-41. doi: 10.1093/nar/gku1195. Epub 2014 Nov 26.

8.

Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins.

Menda N, Strickler SR, Edwards JD, Bombarely A, Dunham DM, Martin GB, Mejia L, Hutton SF, Havey MJ, Maxwell DP, Mueller LA.

BMC Plant Biol. 2014 Oct 28;14:287. doi: 10.1186/s12870-014-0287-2.

9.

From manual curation to visualization of gene families and networks across Solanaceae plant species.

Pujar A, Menda N, Bombarely A, Edwards JD, Strickler SR, Mueller LA.

Database (Oxford). 2013 May 15;2013:bat028. doi: 10.1093/database/bat028. Print 2013.

10.

The plant ontology as a tool for comparative plant anatomy and genomic analyses.

Cooper L, Walls RL, Elser J, Gandolfo MA, Stevenson DW, Smith B, Preece J, Athreya B, Mungall CJ, Rensing S, Hiss M, Lang D, Reski R, Berardini TZ, Li D, Huala E, Schaeffer M, Menda N, Arnaud E, Shrestha R, Yamazaki Y, Jaiswal P.

Plant Cell Physiol. 2013 Feb;54(2):e1. doi: 10.1093/pcp/pcs163. Epub 2012 Dec 5.

11.

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.

Jung S, Menda N, Redmond S, Buels RM, Friesen M, Bendana Y, Sanderson LA, Lapp H, Lee T, MacCallum B, Bett KE, Cain S, Clements D, Mueller LA, Main D.

Database (Oxford). 2011 Nov 26;2011:bar051. doi: 10.1093/database/bar051. Print 2011.

12.

solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.

Tecle IY, Menda N, Buels RM, van der Knaap E, Mueller LA.

BMC Bioinformatics. 2010 Oct 21;11:525. doi: 10.1186/1471-2105-11-525.

13.

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.

Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1149-55. doi: 10.1093/nar/gkq866. Epub 2010 Oct 8.

14.

A community-based annotation framework for linking solanaceae genomes with phenomes.

Menda N, Buels RM, Tecle I, Mueller LA.

Plant Physiol. 2008 Aug;147(4):1788-99. doi: 10.1104/pp.108.119560. Epub 2008 Jun 6.

15.

The SGN comparative map viewer.

Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD.

Bioinformatics. 2008 Feb 1;24(3):422-3. doi: 10.1093/bioinformatics/btm597. Epub 2008 Jan 17.

PMID:
18202028
16.

Abscisic acid deficiency in the tomato mutant high-pigment 3 leading to increased plastid number and higher fruit lycopene content.

Galpaz N, Wang Q, Menda N, Zamir D, Hirschberg J.

Plant J. 2008 Mar;53(5):717-30. Epub 2007 Nov 6.

17.

Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato.

Ori N, Cohen AR, Etzioni A, Brand A, Yanai O, Shleizer S, Menda N, Amsellem Z, Efroni I, Pekker I, Alvarez JP, Blum E, Zamir D, Eshed Y.

Nat Genet. 2007 Jun;39(6):787-91. Epub 2007 May 7.

PMID:
17486095
18.

Overdominant quantitative trait loci for yield and fitness in tomato.

Semel Y, Nissenbaum J, Menda N, Zinder M, Krieger U, Issman N, Pleban T, Lippman Z, Gur A, Zamir D.

Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):12981-6. Epub 2006 Aug 22.

19.

The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.

Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD.

Plant Physiol. 2005 Jul;138(3):1310-7.

20.

Flower proteome: changes in protein spectrum during the advanced stages of rose petal development.

Dafny-Yelin M, Guterman I, Menda N, Ovadis M, Shalit M, Pichersky E, Zamir D, Lewinsohn E, Adam Z, Weiss D, Vainstein A.

Planta. 2005 Sep;222(1):37-46. Epub 2005 May 10.

21.

In silico screening of a saturated mutation library of tomato.

Menda N, Semel Y, Peled D, Eshed Y, Zamir D.

Plant J. 2004 Jun;38(5):861-72.

22.

Volatile ester formation in roses. Identification of an acetyl-coenzyme A. Geraniol/Citronellol acetyltransferase in developing rose petals.

Shalit M, Guterman I, Volpin H, Bar E, Tamari T, Menda N, Adam Z, Zamir D, Vainstein A, Weiss D, Pichersky E, Lewinsohn E.

Plant Physiol. 2003 Apr;131(4):1868-76.

23.

Rose scent: genomics approach to discovering novel floral fragrance-related genes.

Guterman I, Shalit M, Menda N, Piestun D, Dafny-Yelin M, Shalev G, Bar E, Davydov O, Ovadis M, Emanuel M, Wang J, Adam Z, Pichersky E, Lewinsohn E, Zamir D, Vainstein A, Weiss D.

Plant Cell. 2002 Oct;14(10):2325-38. Erratum in: Plant Cell. 2002 Nov;14(11):2975..

24.

O-methyltransferases involved in the biosynthesis of volatile phenolic derivatives in rose petals.

Lavid N, Wang J, Shalit M, Guterman I, Bar E, Beuerle T, Menda N, Shafir S, Zamir D, Adam Z, Vainstein A, Weiss D, Pichersky E, Lewinsohn E.

Plant Physiol. 2002 Aug;129(4):1899-907.

25.
26.

[Assistance by a nurse in the social adaptation of hearing impaired patients].

Menda N.

Kango. 1977 Jan;29(1):129-35. Japanese. No abstract available.

PMID:
584886

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